Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A11G202300 Gossypium hirsutum HOM05D005870 ORTHO05D007216 2.0e-84 315.8 171 100.0
Gohir.D11G220900 Gossypium hirsutum HOM05D005870 ORTHO05D007216 1.6e-81 306.2 171 98.8
Gorai.007G237100 Gossypium raimondii HOM05D005870 ORTHO05D007216 1.6e-81 306.2 171 98.8
Thecc.01G100700 Theobroma cacao HOM05D005870 ORTHO05D007216 5.9e-73 277.7 171 88.3
COL.COLO4_27254 Corchorus olitorius HOM05D005870 ORTHO05D007216 3.9e-72 275.0 171 88.9
Duzib187G0334 Durio zibethinus HOM05D005870 ORTHO05D007216 2.3e-69 265.8 171 87.7
Duzib147G1590 Durio zibethinus HOM05D005870 ORTHO05D007216 9.2e-66 253.8 169 84.6
Dinv13195 Davidia involucrata HOM05D005870 ORTHO05D007216 3.5e-57 225.3 170 74.1
Atru.chr4.42 Acer truncatum HOM05D005870 ORTHO05D007216 6.0e-57 224.6 172 74.4
Ciclev10026623m.g Citrus clementina HOM05D005870 ORTHO05D007216 6.6e-56 221.1 169 75.1
TAR381G0757 Trochodendron aralioides HOM05D005870 ORTHO05D007216 6.6e-56 221.1 169 74.0
PGR004G1211 Punica granatum HOM05D005870 ORTHO05D007216 8.6e-56 220.7 168 74.4
CiPaw.04G100500 Carya illinoinensis HOM05D005870 ORTHO05D007216 1.1e-55 220.3 169 73.4
QL06p049269 Quercus lobata HOM05D005870 ORTHO05D007216 1.1e-55 220.3 176 74.4
Hma1.2p1_0308F.1_g120250 Hydrangea macrophylla HOM05D005870 ORTHO05D007216 4.3e-55 218.4 174 70.7
Prupe.6G188000 Prunus persica HOM05D005870 ORTHO05D007216 8.1e-54 214.2 172 71.5
Potri.007G093700 Populus trichocarpa HOM05D005870 ORTHO05D007216 2.6e-52 209.1 161 74.5
MD00G1199600 Malus domestica HOM05D005870 ORTHO05D007216 1.3e-51 206.8 172 70.3
Nn1g05359 Nelumbo nucifera HOM05D005870 ORTHO05D007216 1.7e-51 206.5 175 70.3
Manes.13G093516 Manihot esculenta HOM05D005870 ORTHO05D007216 3.7e-51 205.3 162 71.0
Sed0015800 Sechium edule HOM05D005870 ORTHO05D007216 4.9e-51 204.9 170 68.8
Cpa.g.sc615.2 Carica papaya HOM05D005870 ORTHO05D007216 1.1e-50 203.8 168 71.4
Nn5g30105 Nelumbo nucifera HOM05D005870 ORTHO05D007216 1.1e-50 203.8 173 67.1
Lsat_1_v5_gn_4_141420 Lactuca sativa HOM05D005870 ORTHO05D007216 5.4e-50 201.4 172 66.9
CANSAT01G0848 Cannabis sativa HOM05D005870 ORTHO05D007216 7.1e-50 201.1 170 68.8
CDE10G0106 Ceratophyllum demersum HOM05D005870 ORTHO05D007216 1.6e-49 199.9 169 66.3
Ca_17742_v3 Cicer arietinum L. HOM05D005870 ORTHO05D007216 3.5e-49 198.7 171 67.8
Nitab4.5_0004855g0010 Nicotiana tabacum HOM05D005870 ORTHO05D007216 1.0e-48 197.2 169 67.5
Nitab4.5_0006110g0010 Nicotiana tabacum HOM05D005870 ORTHO05D007216 1.7e-48 196.4 169 66.9
Nitab4.5_0000033g0220 Nicotiana tabacum HOM05D005870 ORTHO05D007216 3.0e-48 195.7 169 67.5
Actinidia20008 Actinidia chinensis HOM05D005870 ORTHO05D007216 8.6e-48 194.1 169 68.0
PGSC0003DMG400033691 Solanum tuberosum HOM05D005870 ORTHO05D007216 8.6e-48 194.1 169 65.1
AT5G65220 Arabidopsis thaliana HOM05D005870 ORTHO05D007216 1.5e-47 193.4 171 65.5
HanXRQChr15g0484171 Helianthus annuus HOM05D005870 ORTHO05D007216 1.5e-47 193.4 174 65.5
Sopen03g028660 Solanum pennellii HOM05D005870 ORTHO05D007216 1.5e-47 193.4 169 65.7
ClCG10G008830 Citrullus lanatus HOM05D005870 ORTHO05D007216 1.9e-47 193.0 170 67.1
CDE10G0428 Ceratophyllum demersum HOM05D005870 ORTHO05D007216 2.5e-47 192.6 169 64.5
MD01G1031300 Malus domestica HOM05D005870 ORTHO05D007216 2.5e-47 192.6 151 72.2
Peaxi162Scf00171g00927 Petunia axillaris HOM05D005870 ORTHO05D007216 2.5e-47 192.6 169 66.3
MBI02_g35763_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 3.3e-47 192.2 160 69.4
FAN23G0590 Fragaria x ananassa HOM05D005870 ORTHO05D007216 4.3e-47 191.8 169 65.7
Nitab4.5_0000430g0130 Nicotiana tabacum HOM05D005870 ORTHO05D007216 4.3e-47 191.8 169 65.1
Solyc03g097950.4 Solanum lycopersicum HOM05D005870 ORTHO05D007216 7.3e-47 191.0 169 65.1
MSTRG.3774 Avicennia marina HOM05D005870 ORTHO05D007216 9.6e-47 190.7 169 66.3
DCAR_014215 Daucus carota HOM05D005870 ORTHO05D007216 1.2e-46 190.3 169 65.1
Solyc06g072470.4 Solanum lycopersicum HOM05D005870 ORTHO05D007216 1.2e-46 190.3 171 66.1
Sopen06g028840 Solanum pennellii HOM05D005870 ORTHO05D007216 1.2e-46 190.3 171 66.1
PGSC0003DMG400026946 Solanum tuberosum HOM05D005870 ORTHO05D007216 1.6e-46 189.9 178 64.6
vmacro07307 Vaccinium macrocarpon HOM05D005870 ORTHO05D007216 1.6e-46 189.9 170 64.7
Migut.H02353 Erythranthe guttata HOM05D005870 ORTHO05D007216 2.1e-46 189.5 170 64.1
Oeu002170.1 Olea europaea HOM05D005870 ORTHO05D007216 2.8e-46 189.1 169 65.1
Rhsim10G0163500 Rhododendron simsii HOM05D005870 ORTHO05D007216 2.8e-46 189.1 173 64.2
Phvul.002G256700 Phaseolus vulgaris HOM05D005870 ORTHO05D007216 3.6e-46 188.7 171 65.5
TPR.G6297 Trifolium pratense HOM05D005870 ORTHO05D007216 3.6e-46 188.7 167 65.3
CAN.G65.97 Capsicum annuum HOM05D005870 ORTHO05D007216 1.1e-45 187.2 168 63.7
Glyma.05G178000 Glycine max HOM05D005870 ORTHO05D007216 1.8e-45 186.4 171 65.5
Medtr8g090185 Medicago truncatula HOM05D005870 ORTHO05D007216 2.4e-45 186.0 171 65.5
unitig_747.g21825 Utricularia gibba HOM05D000660 ORTHO05D000766 2.4e-45 186.0 155 68.4
AL8G42760 Arabidopsis lyrata HOM05D005870 ORTHO05D007216 3.1e-45 185.7 171 64.3
TWI74G0695 Tripterygium wilfordii HOM05D005870 ORTHO05D007216 3.1e-45 185.7 150 71.3
AUR62003803 Chenopodium quinoa HOM05D005870 ORTHO05D007216 4.0e-45 185.3 167 62.3
VMungo0251G1964 Vigna mungo HOM05D005870 ORTHO05D007216 5.2e-45 184.9 168 63.7
RcHm_v2.0_Chr2g0113161 Rosa chinensis HOM05D005870 ORTHO05D007216 6.8e-45 184.5 169 63.3
Carub.0008s2608 Capsella rubella HOM05D005870 ORTHO05D007216 1.2e-44 183.7 171 63.2
Glyma.08G135000 Glycine max HOM05D005870 ORTHO05D007216 1.2e-44 183.7 171 64.3
FvH4_1g20710 Fragaria vesca HOM05D005870 ORTHO05D007216 1.5e-44 183.3 169 63.3
FAN19G2750 Fragaria x ananassa HOM05D005870 ORTHO05D007216 1.5e-44 183.3 169 63.3
FAN26G0235 Fragaria x ananassa HOM05D005870 ORTHO05D007216 1.3e-43 180.3 169 62.7
Aqoxy6G00780 Aquilegia oxysepala HOM05D005870 ORTHO05D007216 2.9e-43 179.1 158 65.2
Cc07_g15090 Coffea canephora HOM05D005870 ORTHO05D007216 2.9e-43 179.1 172 61.0
Lalb_Chr12g0203881 Lupinus albus HOM05D005870 ORTHO05D007216 4.9e-43 178.3 169 63.9
FAN28G1626 Fragaria x ananassa HOM05D005870 ORTHO05D007216 1.1e-42 177.2 169 61.5
ECA232G4208 Erigeron canadensis HOM05D005870 ORTHO05D007216 1.4e-42 176.8 178 60.1
Aa31LG1G16740 Aethionema arabicum HOM05D005870 ORTHO05D007216 1.9e-42 176.4 171 63.2
arahy.Tifrunner.gnm1.ann1.Q6429D Arachis hypogaea HOM05D005870 ORTHO05D007216 2.4e-42 176.0 148 68.2
Sc03g0002050 Simmondsia chinensis HOM05D005870 ORTHO05D007216 3.2e-42 175.6 119 80.7
THA.LOC104801696 Tarenaya hassleriana HOM05D005870 ORTHO05D007216 4.2e-42 175.3 172 64.0
arahy.Tifrunner.gnm1.ann1.K43FII Arachis hypogaea HOM05D005870 ORTHO05D007216 5.4e-42 174.9 148 67.6
Eucgr.I00441 Eucalyptus grandis HOM05D005870 ORTHO05D007216 5.4e-42 174.9 153 69.9
Sp2g28320 Schrenkiella parvula HOM05D005870 ORTHO05D007216 9.3e-42 174.1 174 60.3
Lj4g0027302 Lotus japonicus HOM05D005870 ORTHO05D007216 1.6e-41 173.3 168 60.1
CARHR279150 Cardamine hirsuta HOM05D005870 ORTHO05D007216 2.1e-41 172.9 174 60.9
Lalb_Chr07g0185191 Lupinus albus HOM05D005870 ORTHO05D007216 2.1e-41 172.9 171 62.0
TWI53G1299 Tripterygium wilfordii HOM05D005870 ORTHO05D007216 2.1e-41 172.9 151 70.2
C03p60860 Brassica napus HOM05D005870 ORTHO05D007216 2.7e-41 172.6 172 62.2
MBI05_g37050_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 2.7e-41 172.6 112 82.1
Lj2A546G34 Lonicera japonica HOM05D005870 ORTHO05D007216 4.6e-41 171.8 150 66.7
CsaV3_4G008900 Cucumis sativus L. HOM05D005870 ORTHO05D007216 6.0e-41 171.4 171 62.0
BcaC01g02758 Brassica carinata HOM05D005870 ORTHO05D007216 1.0e-40 170.6 172 61.0
BolC3t18343H Brassica oleracea HOM05D005870 ORTHO05D007216 1.0e-40 170.6 172 61.0
Thhalv10005022m.g Eutrema salsugineum HOM05D005870 ORTHO05D007216 1.7e-40 169.9 174 60.3
SalBow3G2704 Salvia bowleyana HOM05D005870 ORTHO05D007216 1.7e-40 169.9 174 59.8
SGA_v2.0_scaffold54G19505 Striga asiatica HOM05D005870 ORTHO05D007216 3.0e-40 169.1 171 61.4
BcaB02g09886 Brassica carinata HOM05D005870 ORTHO05D007216 3.9e-40 168.7 175 60.6
EL10Ac6g15115 Beta vulgaris HOM05D005870 ORTHO05D007216 1.5e-39 166.8 168 57.1
A02p43790 Brassica napus HOM05D005870 ORTHO05D007216 2.5e-39 166.0 171 59.6
BraA02t09303Z Brassica rapa HOM05D005870 ORTHO05D007216 2.5e-39 166.0 171 59.6
Sabra07G0077600 Salix brachista HOM05D005870 ORTHO05D007216 5.6e-39 164.9 274 44.2
A06p32070 Brassica napus HOM05D005870 ORTHO05D007216 7.3e-39 164.5 174 59.8
BraA06t26136Z Brassica rapa HOM05D005870 ORTHO05D007216 7.3e-39 164.5 174 59.8
BcaB07g34228 Brassica carinata HOM05D005870 ORTHO05D007216 1.6e-38 163.3 172 59.9
AUR62001999 Chenopodium quinoa HOM05D005870 ORTHO05D007216 1.1e-37 160.6 164 55.5
PSO447G0167 Papaver somniferum HOM05D005870 ORTHO05D007216 9.0e-37 157.5 172 54.7
PSO210G6840 Papaver somniferum HOM05D005870 ORTHO05D007216 2.0e-36 156.4 172 54.1
Psat7g055240 Pisum sativum HOM05D005870 ORTHO05D007216 9.9e-36 154.1 150 60.0
Hund13620 Selenicereus undatus HOM05D005870 ORTHO05D007216 1.7e-35 153.3 160 56.9
Os02g0754300 Oryza sativa ssp. japonica HOM05D005870 ORTHO05D007216 3.8e-35 152.1 165 55.2
Cfa002651 Carpinus fangiana HOM05D005870 ORTHO05D007216 7.1e-34 147.9 116 72.4
MELO3C018954.2 Cucumis melo HOM05D005870 ORTHO05D007216 1.2e-33 147.1 171 55.6
Haze_24920 Corylus avellana HOM05D005870 ORTHO05D007216 3.5e-33 145.6 112 73.2
Zm00001eb249540 Zea mays HOM05D005870 ORTHO05D007216 1.5e-31 140.2 104 70.2
Zm00001eb255290 Zea mays HOM05D005870 ORTHO05D007216 1.5e-31 140.2 158 53.8
Zm00001eb194130 Zea mays HOM05D005870 ORTHO05D007216 5.6e-31 138.3 160 52.5
Zm00001eb335180 Zea mays HOM05D005870 ORTHO05D007216 1.3e-30 137.1 104 68.3
GSVIVG01004857001 Vitis vinifera HOM05D005870 ORTHO05D007216 1.4e-29 133.7 79 89.9
GSVIVG01013304001 Vitis vinifera HOM05D005870 ORTHO05D007216 1.4e-29 133.7 79 89.9
Hund16294 Selenicereus undatus HOM05D005870 ORTHO05D007216 4.0e-29 132.1 181 48.1
Mapoly0011s0026 Marchantia polymorpha HOM05D005870 ORTHO05D007216 3.5e-25 119.0 108 59.3
Pp3c9_19800 Physcomitrium patens HOM05D005870 ORTHO05D007216 6.0e-25 118.2 106 62.3
AagrBONN_evm.TU.Sc2ySwM_117.2528 Anthoceros agrestis HOM05D005870 ORTHO05D007216 5.1e-24 115.2 109 57.8
MSTRG.15716 Avicennia marina HOM05D005870 ORTHO05D007216 5.6e-23 111.7 121 55.4
SMO347G0042 Selaginella moellendorffii HOM05D005870 ORTHO05D007216 4.8e-22 108.6 109 54.1
SGA_v2.0_scaffold111G31512 Striga asiatica HOM05D005870 ORTHO05D007216 3.1e-21 105.9 106 58.5
Actinidia06560 Actinidia chinensis HOM05D005870 ORTHO05D007216 2.0e-20 103.2 113 60.2
HPP92_013107 Vanilla planifolia HOM05D005870 ORTHO05D007216 1.1e-18 97.4 100 53.0
ATR0782G037 Amborella trichopoda HOM05D005870 ORTHO05D007216 6.0e-17 91.7 100 55.0
Lj5C62T6 Lonicera japonica HOM05D005870 ORTHO05D007216 7.9e-17 91.3 76 65.8
CBR_g8034 Chara braunii HOM05D005870 ORTHO05D007216 1.1e-15 87.4 92 48.9
Haze_24918 Corylus avellana HOM05D009730 ORTHO05D000126 4.3e-15 85.5 61 78.7
HPP92_013094 Vanilla planifolia HOM05D005870 ORTHO05D007216 1.8e-13 80.1 58 69.0
MBI18_g38162_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 1.2e-12 77.4 80 58.8
BolC2t12461H Brassica oleracea HOM05D005870 ORTHO05D007216 1.3e-11 73.9 51 76.5
C02p63940 Brassica napus HOM05D000382 ORTHO05D000391 2.7e-09 66.2 61 63.9
MCO09G004 Micromonas commoda HOM05D005870 ORTHO05D007216 2.3e-08 63.2 73 43.8
Lj1P1094T14 Lonicera japonica HOM05D005870 ORTHO05D007216 4.8e-06 55.5 51 60.8


User provided reference genes

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