Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.9e-97 357.8 187 100.0
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.3e-94 349.7 187 97.9
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.0e-86 322.0 260 71.2
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 4.4e-53 211.8 207 60.4
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 2.7e-50 202.6 208 60.6
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 1.5e-48 196.8 207 59.4
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 9.4e-48 194.1 209 58.4
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 1.6e-47 193.4 210 57.6
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.0e-46 189.1 211 57.3
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 7.5e-45 184.5 211 56.4
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.3e-44 181.4 209 55.5
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 5.0e-41 171.8 209 54.1
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 1.9e-40 169.9 204 54.4
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 2.5e-40 169.5 206 53.9
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 9.5e-40 167.5 210 53.3
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 2.1e-39 166.4 209 53.6
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 2.1e-39 166.4 204 52.9
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 1.0e-38 164.1 204 53.4
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 4.0e-38 162.2 208 52.4
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.2e-37 160.6 182 53.8
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.5e-37 160.2 226 49.1
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 2.0e-37 159.8 207 52.7
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 2.0e-37 159.8 207 52.7
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 7.5e-37 157.9 182 54.4
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 1.3e-36 157.1 209 50.7
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.9e-36 156.0 182 53.3
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 6.4e-36 154.8 192 53.1
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 6.4e-36 154.8 225 48.0
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 1.7e-33 146.7 207 49.8
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 2.3e-33 146.4 192 53.1
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 1.2e-31 140.6 192 48.4
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 1.6e-31 140.2 209 49.8
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.8e-30 136.7 152 55.9
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 4.0e-30 135.6 196 50.5
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 8.9e-30 134.4 212 48.1
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 1.2e-29 134.0 208 47.1
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 1.5e-29 133.7 199 48.7
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 2.9e-28 129.4 192 47.9
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.4e-27 126.3 209 45.9
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 3.2e-27 125.9 189 49.2
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 5.4e-27 125.2 212 45.8
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 9.2e-27 124.4 194 46.9
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 2.0e-26 123.2 198 48.0
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 2.0e-26 123.2 224 45.1
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 2.7e-26 122.9 214 44.9
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.3e-25 119.8 215 45.6
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.3e-25 119.8 215 45.6
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 2.3e-25 119.8 209 44.5
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 3.0e-25 119.4 180 47.8
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 3.9e-25 119.0 200 46.0
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 3.9e-25 119.0 224 42.9
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 5.0e-25 118.6 191 50.3
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 8.6e-25 117.9 159 50.9
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 1.9e-24 116.7 198 48.5
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 3.3e-24 115.9 202 45.5
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 4.3e-24 115.5 160 53.8
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 7.3e-24 114.8 160 51.9
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 1.2e-23 114.0 176 48.9
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 1.6e-23 113.6 218 44.5
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.8e-23 112.8 202 44.1
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 8.1e-23 111.3 126 52.4
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.4e-22 110.5 206 41.7
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 3.1e-22 109.4 232 40.1
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 3.1e-22 109.4 140 50.7
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 8.9e-22 107.8 220 43.2
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 8.9e-22 107.8 168 47.6
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 1.5e-21 107.1 194 39.2
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 2.6e-21 106.3 164 47.6
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 2.6e-21 106.3 192 41.1
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 2.6e-21 106.3 219 42.9
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 3.4e-21 105.9 197 44.2
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 3.4e-21 105.9 226 40.7
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 4.4e-21 105.5 219 41.6
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 5.8e-21 105.1 211 41.2
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 7.5e-21 104.8 204 41.7
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 7.5e-21 104.8 169 46.7
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 7.5e-21 104.8 98 64.3
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 1.3e-20 104.0 239 39.7
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.7e-20 103.6 224 39.3
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 1.7e-20 103.6 231 38.5
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 1.7e-20 103.6 231 38.5
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 2.2e-20 103.2 217 40.1
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 2.2e-20 103.2 197 40.1
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 2.2e-20 103.2 231 38.5
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 4.9e-20 102.1 223 39.9
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 4.9e-20 102.1 215 40.9
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 8.3e-20 101.3 216 39.4
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 1.1e-19 100.9 184 43.5
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 1.1e-19 100.9 210 40.5
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 1.1e-19 100.9 234 37.6
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 1.9e-19 100.1 217 40.6
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 2.4e-19 99.8 220 40.0
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 2.4e-19 99.8 206 40.8
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 4.1e-19 99.0 201 41.8
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 4.1e-19 99.0 194 40.7
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 5.4e-19 98.6 204 37.7
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 7.1e-19 98.2 234 37.6
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 7.1e-19 98.2 217 41.0
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 1.2e-18 97.4 161 47.8
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 2.1e-18 96.7 216 39.4
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 2.7e-18 96.3 229 37.6
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 2.7e-18 96.3 239 38.1
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 3.5e-18 95.9 191 41.9
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 7.8e-18 94.7 205 41.5
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 1.0e-17 94.4 218 38.1
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 1.3e-17 94.0 194 40.7
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.3e-17 94.0 206 40.8
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 3.9e-17 92.4 226 38.1
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 3.9e-17 92.4 209 39.2
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 5.1e-17 92.0 166 46.4
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 6.6e-17 91.7 179 40.2
Gohir.A07G174000 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.9e-16 90.1 93 57.0
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 1.9e-16 90.1 150 44.0
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 4.3e-16 89.0 210 35.2
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 1.2e-15 87.4 160 45.6
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 1.6e-15 87.0 171 41.5
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 3.6e-15 85.9 202 38.6
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 1.1e-14 84.3 200 39.5
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 1.4e-14 84.0 207 36.7
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 3.1e-14 82.8 208 38.0
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 4.0e-14 82.4 178 43.8
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 5.8e-13 78.6 166 41.6
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 1.3e-12 77.4 164 40.2
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 3.2e-11 72.8 204 35.8
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 3.2e-11 72.8 189 35.4
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 3.2e-11 72.8 104 51.0
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 7.1e-11 71.6 98 51.0
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 9.2e-11 71.2 273 32.6
Gohir.D11G325975 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.1e-10 70.1 107 45.8
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 2.1e-10 70.1 170 38.2
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 2.7e-10 69.7 199 35.2
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 2.7e-10 69.7 157 35.7
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 7.8e-10 68.2 211 34.6
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 1.7e-09 67.0 145 35.9
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 2.3e-09 66.6 107 47.7
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 3.9e-09 65.9 201 33.8
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 6.6e-09 65.1 153 33.3
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 8.6e-09 64.7 106 50.0
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.5e-08 63.9 104 49.0
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 5.6e-08 62.0 118 41.5
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 9.6e-08 61.2 207 32.4
SalBow7G1622 Salvia bowleyana HOM05D004795 ORTHO05D005518 4.7e-07 58.9 106 50.0
SalBow7G4115 Salvia bowleyana HOM05D004795 ORTHO05D005518 4.7e-07 58.9 106 50.0
Actinidia15890 Actinidia chinensis HOM05D004795 ORTHO05D005518 4.0e-06 55.8 194 33.0
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 8.9e-06 54.7 195 29.2


User provided reference genes

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