Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A11G134300 Gossypium hirsutum HOM05D006210 ORTHO05D007510 8.7e-207 723.4 363 100.0
Gohir.D11G140400 Gossypium hirsutum HOM05D006210 ORTHO05D007510 2.1e-200 702.2 363 97.5
Duzib138G0227 Durio zibethinus HOM05D006210 ORTHO05D007510 4.1e-180 634.8 363 88.4
Thecc.01G247800 Theobroma cacao HOM05D006210 ORTHO05D007510 3.0e-175 618.6 362 85.9
COL.COLO4_37372 Corchorus olitorius HOM05D006210 ORTHO05D007510 1.5e-158 563.1 365 80.0
GSVIVG01028451001 Vitis vinifera HOM05D006210 ORTHO05D007510 8.0e-152 540.8 365 74.0
CiPaw.03G272200 Carya illinoinensis HOM05D006210 ORTHO05D007510 1.8e-151 539.7 362 74.3
Ciclev10020743m.g Citrus clementina HOM05D006210 ORTHO05D007510 3.4e-150 535.4 363 74.1
Potri.002G255300 Populus trichocarpa HOM05D006210 ORTHO05D007510 3.7e-149 531.9 361 75.1
QL09p042418 Quercus lobata HOM05D006210 ORTHO05D007510 1.8e-148 529.6 379 71.5
Prupe.1G573100 Prunus persica HOM05D006210 ORTHO05D007510 7.7e-147 524.2 363 72.5
Atru.chr5.2084_Atru.chr5.2085 Acer truncatum HOM05D006210 ORTHO05D007510 1.5e-145 520.0 365 72.6
CANSAT01G0995 Cannabis sativa HOM05D006210 ORTHO05D007510 5.5e-145 518.1 364 70.6
Actinidia30115 Actinidia chinensis HOM05D006210 ORTHO05D007510 2.8e-144 515.8 361 69.5
FvH4_2g20260 Fragaria vesca HOM05D006210 ORTHO05D007510 1.4e-143 513.5 363 71.6
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 2.0e-142 509.6 365 70.7
TWI18G1043 Tripterygium wilfordii HOM05D006210 ORTHO05D007510 9.8e-142 507.3 361 70.1
Manes.13G038600 Manihot esculenta HOM05D006210 ORTHO05D007510 2.8e-141 505.8 361 69.8
Sed0025577 Sechium edule HOM05D006210 ORTHO05D007510 3.7e-141 505.4 365 69.6
MELO3C012833.2 Cucumis melo HOM05D006210 ORTHO05D007510 6.3e-141 504.6 365 69.0
MSTRG.22887 Avicennia marina HOM05D006210 ORTHO05D007510 1.1e-140 503.8 361 70.6
Eucgr.A01369 Eucalyptus grandis HOM05D006210 ORTHO05D007510 1.4e-140 503.4 363 70.0
Phvul.007G154100 Phaseolus vulgaris HOM05D006210 ORTHO05D007510 1.4e-140 503.4 362 70.7
Hma1.2p1_2051F.1_g312580 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 3.1e-140 502.3 359 71.0
TPR.G28794 Trifolium pratense HOM05D006210 ORTHO05D007510 1.6e-139 500.0 369 70.5
Rhsim13G0040700 Rhododendron simsii HOM05D006210 ORTHO05D007510 5.9e-139 498.0 370 65.9
Glyma.13G127800 Glycine max HOM05D006210 ORTHO05D007510 1.3e-138 496.9 362 69.9
PGR031G0293 Punica granatum HOM05D006210 ORTHO05D007510 1.3e-138 496.9 361 68.4
Sp1g02950 Schrenkiella parvula HOM05D006210 ORTHO05D007510 3.8e-138 495.4 364 66.5
Thhalv10008004m.g Eutrema salsugineum HOM05D006210 ORTHO05D007510 1.1e-137 493.8 363 67.5
SalBow5G1930 Salvia bowleyana HOM05D006210 ORTHO05D007510 1.1e-137 493.8 373 65.4
MBI10_g26060_MAGBIO Magnolia biondii HOM05D006210 ORTHO05D007510 1.9e-137 493.0 363 67.5
AT1G04130 Arabidopsis thaliana HOM05D006210 ORTHO05D007510 9.5e-137 490.7 361 66.8
THA.LOC104801120 Tarenaya hassleriana HOM05D006210 ORTHO05D007510 1.2e-136 490.3 358 67.6
TAR362G1053 Trochodendron aralioides HOM05D006210 ORTHO05D007510 1.2e-136 490.3 363 66.7
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 1.6e-136 490.0 335 74.3
Psat6g064440 Pisum sativum HOM05D006210 ORTHO05D007510 2.8e-136 489.2 363 69.4
AL1G13730 Arabidopsis lyrata HOM05D006210 ORTHO05D007510 4.7e-136 488.4 361 66.2
Carub.0001s0328 Capsella rubella HOM05D006210 ORTHO05D007510 6.1e-136 488.0 363 66.9
Ca_09640_v3 Cicer arietinum L. HOM05D006210 ORTHO05D007510 1.0e-135 487.3 363 70.5
ECA247G1810 Erigeron canadensis HOM05D006210 ORTHO05D007510 1.0e-135 487.3 365 67.4
Dinv43053 Davidia involucrata HOM05D006210 ORTHO05D007510 1.8e-135 486.5 340 73.5
CARHR003480 Cardamine hirsuta HOM05D006210 ORTHO05D007510 5.2e-135 485.0 363 65.6
Sopen09g025510 Solanum pennellii HOM05D006210 ORTHO05D007510 1.5e-134 483.4 368 66.6
Hund18317 Selenicereus undatus HOM05D006210 ORTHO05D007510 2.0e-134 483.0 361 67.0
ClCG00G001600 Citrullus lanatus HOM05D006210 ORTHO05D007510 3.4e-134 482.3 340 72.1
Lj1C76G7 Lonicera japonica HOM05D006210 ORTHO05D007510 3.4e-134 482.3 373 65.7
BraA09t42139Z Brassica rapa HOM05D006210 ORTHO05D007510 9.8e-134 480.7 385 63.6
FAN27G1100 Fragaria x ananassa HOM05D006210 ORTHO05D007510 9.8e-134 480.7 363 67.8
PGSC0003DMG400007719 Solanum tuberosum HOM05D006210 ORTHO05D007510 1.3e-133 480.3 369 66.7
Glyma.10G040900 Glycine max HOM05D006210 ORTHO05D007510 1.7e-133 479.9 362 66.6
Nn1g03023 Nelumbo nucifera HOM05D006210 ORTHO05D007510 2.2e-133 479.6 363 64.2
BcaC07g42211 Brassica carinata HOM05D006210 ORTHO05D007510 3.7e-133 478.8 366 66.1
HanXRQChr10g0280241 Helianthus annuus HOM05D006210 ORTHO05D007510 6.4e-133 478.0 366 67.2
Lj5g0001397 Lotus japonicus HOM05D006210 ORTHO05D007510 1.4e-132 476.9 362 67.4
CSS0033273 Camellia sinensis var. sinensis HOM05D006210 ORTHO05D007510 5.4e-132 474.9 370 65.1
Oeu058104.1 Olea europaea HOM05D006210 ORTHO05D007510 5.4e-132 474.9 363 66.1
Aa31LG1G20710 Aethionema arabicum HOM05D006210 ORTHO05D007510 7.0e-132 474.6 364 64.8
BolC8t52775H Brassica oleracea HOM05D006210 ORTHO05D007510 2.0e-131 473.0 390 62.3
Migut.O00355 Erythranthe guttata HOM05D006210 ORTHO05D007510 2.0e-131 473.0 361 65.4
Lalb_Chr21g0314151 Lupinus albus HOM05D006210 ORTHO05D007510 2.7e-131 472.6 377 64.7
Aqoxy5G00102 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 2.3e-130 469.5 363 64.7
A09p68040 Brassica napus HOM05D006210 ORTHO05D007510 4.3e-129 465.3 364 64.8
PSO210G7683 Papaver somniferum HOM05D006210 ORTHO05D007510 4.3e-129 465.3 365 65.5
PSO170G6901 Papaver somniferum HOM05D006210 ORTHO05D007510 2.8e-128 462.6 365 65.2
C08p52480 Brassica napus HOM05D006210 ORTHO05D007510 3.6e-128 462.2 364 64.0
VMungo0720G2771 Vigna mungo HOM05D006210 ORTHO05D007510 1.1e-127 460.7 361 67.6
Nitab4.5_0000385g0060 Nicotiana tabacum HOM05D006210 ORTHO05D007510 1.3e-125 453.8 363 63.9
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 1.1e-124 450.7 387 64.1
arahy.Tifrunner.gnm1.ann1.J3R5E0 Arachis hypogaea HOM05D006210 ORTHO05D007510 7.0e-124 448.0 343 68.2
Cpa.g.sc87.54 Carica papaya HOM05D006210 ORTHO05D007510 9.2e-124 447.6 423 58.2
unitig_22.g6263 Utricularia gibba HOM05D006210 ORTHO05D007510 1.1e-121 440.7 374 61.0
Ah.15g091520 Amaranthus hybridus HOM05D006210 ORTHO05D007510 8.1e-120 434.5 361 61.5
BcaC07g42208 Brassica carinata HOM05D006210 ORTHO05D007510 1.8e-119 433.3 377 59.7
Haze_24722 Corylus avellana HOM05D006210 ORTHO05D007510 5.2e-119 431.8 353 65.4
arahy.Tifrunner.gnm1.ann1.6WB007 Arachis hypogaea HOM05D006210 ORTHO05D007510 1.2e-118 430.6 362 63.0
ClCG07G001460 Citrullus lanatus HOM05D006210 ORTHO05D007510 4.4e-118 428.7 401 59.4
Gorai.007G150600 Gossypium raimondii HOM05D006210 ORTHO05D007510 2.2e-117 426.4 340 70.0
AUR62025420 Chenopodium quinoa HOM05D006210 ORTHO05D007510 2.7e-115 419.5 361 60.1
SEGI_04783 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 2.7e-115 419.5 364 58.8
SGA_v2.0_scaffold382G50403 Striga asiatica HOM05D006210 ORTHO05D007510 3.9e-114 415.6 328 62.5
arahy.Tifrunner.gnm1.ann1.GM89QY Arachis hypogaea HOM05D006210 ORTHO05D007510 2.6e-110 402.9 338 63.9
Peaxi162Scf00043g00235 Petunia axillaris HOM05D006210 ORTHO05D007510 2.9e-109 399.4 328 61.9
Cc01_g17680 Coffea canephora HOM05D006210 ORTHO05D007510 1.4e-108 397.1 363 57.6
Zm00001eb057360 Zea mays HOM05D006210 ORTHO05D007510 9.2e-108 394.4 373 53.9
ATR0723G059 Amborella trichopoda HOM05D006210 ORTHO05D007510 3.8e-101 372.5 361 55.4
AUR62008821 Chenopodium quinoa HOM05D006210 ORTHO05D007510 3.9e-98 362.5 363 55.4
MD10G1174300 Malus domestica HOM05D006210 ORTHO05D007510 1.8e-95 353.6 238 75.2
FAN24G1818 Fragaria x ananassa HOM05D006210 ORTHO05D007510 3.8e-93 345.9 238 73.5
arahy.Tifrunner.gnm1.ann1.5C4SPF Arachis hypogaea HOM05D006210 ORTHO05D007510 8.4e-93 344.7 238 73.5
RcHm_v2.0_Chr6g0286041 Rosa chinensis HOM05D006210 ORTHO05D007510 8.4e-93 344.7 238 72.7
Mapoly0012s0146 Marchantia polymorpha HOM05D006210 ORTHO05D007510 2.1e-91 340.1 365 49.0
CAN.G119.7 Capsicum annuum HOM05D006210 ORTHO05D007510 4.6e-91 339.0 245 71.4
DCAR_000557 Daucus carota HOM05D006210 ORTHO05D007510 2.8e-88 329.7 238 71.4
Hma1.2p1_2051F.1_g312575 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 5.3e-87 325.5 238 70.6
Solyc09g064380.3 Solanum lycopersicum HOM05D006210 ORTHO05D007510 5.3e-87 325.5 238 70.2
Pp3c19_11990 Physcomitrium patens HOM05D006210 ORTHO05D007510 1.9e-84 317.0 362 47.0
Prupe.8G213100 Prunus persica HOM05D006210 ORTHO05D007510 7.1e-84 315.1 361 53.2
AagrBONN_evm.TU.Sc2ySwM_228.4049__4050 Anthoceros agrestis HOM05D006210 ORTHO05D007510 5.6e-81 305.4 301 51.5
HPP92_025825 Vanilla planifolia HOM05D006210 ORTHO05D007510 7.4e-81 305.1 361 47.6
Lsat_1_v5_gn_9_11700 Lactuca sativa HOM05D006210 ORTHO05D007510 2.4e-79 300.1 292 57.5
Nitab4.5_0000392g0100 Nicotiana tabacum HOM05D006210 ORTHO05D007510 7.1e-76 288.5 307 52.4
EL10Ac7g17713 Beta vulgaris HOM05D006210 ORTHO05D007510 1.6e-72 277.3 238 59.2
CBR_g36953 Chara braunii HOM05D006210 ORTHO05D007510 1.2e-59 234.6 302 42.7
Sc05g0002800 Simmondsia chinensis HOM05D006210 ORTHO05D007510 2.1e-59 233.8 362 41.7
Os03g0750100 Oryza sativa ssp. japonica HOM05D006210 ORTHO05D007510 7.4e-57 225.3 264 48.1
MD10G1174200 Malus domestica HOM05D006210 ORTHO05D007510 1.0e-45 188.3 128 71.9
PRCOL_00004543 Prasinoderma coloniale HOM05D006210 ORTHO05D007510 3.6e-43 179.9 368 34.0
CAN.G119.6 Capsicum annuum HOM05D006210 ORTHO05D007510 3.1e-39 166.8 126 62.7
DCAR_000556 Daucus carota HOM05D006210 ORTHO05D007510 4.1e-39 166.4 127 61.4
RcHm_v2.0_Chr6g0286031 Rosa chinensis HOM05D006210 ORTHO05D007510 7.0e-39 165.6 128 65.6
Cre08.g375650 Chlamydomonas reinhardtii HOM05D006210 ORTHO05D007510 5.9e-38 162.5 328 33.2
MCO01G218 Micromonas commoda HOM05D006210 ORTHO05D007510 1.9e-36 157.5 374 32.1
HanXRQChr01g0013201 Helianthus annuus HOM05D006210 ORTHO05D007510 9.4e-36 155.2 127 63.0
Hma1.2p1_0559F.1_g178660 Hydrangea macrophylla HOM05D000705 ORTHO05D007510 4.0e-34 149.8 102 72.5
MD05G1186500 Malus domestica HOM05D006210 ORTHO05D007510 8.6e-29 132.1 90 72.2
vmacro02716 Vaccinium macrocarpon HOM05D006210 ORTHO05D007510 2.1e-27 127.5 98 62.2
MD05G1186300 Malus domestica HOM05D006210 ORTHO05D007510 7.5e-25 119.0 89 66.3
Actinidia37561 Actinidia chinensis HOM05D006210 ORTHO05D007510 8.3e-24 115.5 106 52.8
TAR349G0001 Trochodendron aralioides HOM05D006210 ORTHO05D007510 1.4e-23 114.8 189 41.8
Sc05g0002820 Simmondsia chinensis HOM05D006210 ORTHO05D007510 3.1e-23 113.6 102 56.9
Cfa024968 Carpinus fangiana HOM05D006210 ORTHO05D007510 1.4e-15 88.2 224 32.1
SEGI_25119 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 5.6e-12 76.3 51 60.8
Zm00001eb416010 Zea mays HOM05D017284 ORTHO05D007510 1.4e-10 71.6 65 52.3
MCO05G608 Micromonas commoda HOM05D002345 ORTHO05D002391 5.8e-09 66.2 220 28.6
TWI14G0889 Tripterygium wilfordii HOM05D001916 ORTHO05D003272 5.8e-09 66.2 116 36.2
AUR62031443 Chenopodium quinoa HOM05D001916 ORTHO05D003272 1.3e-08 65.1 121 33.1
Oeu009294.1 Olea europaea HOM05D001916 ORTHO05D003272 2.2e-08 64.3 148 33.1
QL09p012344 Quercus lobata HOM05D001916 ORTHO05D003272 2.9e-08 63.9 102 36.3
SMO234G0002 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 2.9e-08 63.9 113 34.5
Cc02_g02210 Coffea canephora HOM05D001916 ORTHO05D003272 6.4e-08 62.8 141 27.7
HanXRQChr13g0392421 Helianthus annuus HOM05D001916 ORTHO05D003272 8.3e-08 62.4 141 33.3
AUR62021095 Chenopodium quinoa HOM05D001916 ORTHO05D003272 1.1e-07 62.0 102 33.3
Eucgr.A02714 Eucalyptus grandis HOM05D001916 ORTHO05D003272 1.1e-07 62.0 108 34.3
MSTRG.8696 Avicennia marina HOM05D001916 ORTHO05D003272 1.4e-07 61.6 131 35.1
BcaB05g23846 Brassica carinata HOM05D001916 ORTHO05D003272 1.4e-07 61.6 126 32.5
CiPaw.12G018800 Carya illinoinensis HOM05D001916 ORTHO05D003272 1.4e-07 61.6 102 37.3
MD01G1210400 Malus domestica HOM05D001916 ORTHO05D003272 1.4e-07 61.6 131 32.1
CiPaw.06G004400 Carya illinoinensis HOM05D001916 ORTHO05D003272 2.4e-07 60.8 102 37.3
PGR004G2173 Punica granatum HOM05D006451 ORTHO05D007680 2.4e-07 60.8 166 32.5
THA.LOC104813028 Tarenaya hassleriana HOM05D001916 ORTHO05D003272 2.4e-07 60.8 126 34.9
CAN.G204.27 Capsicum annuum HOM05D001916 ORTHO05D003272 3.2e-07 60.5 102 34.3
Lsat_1_v5_gn_2_131520 Lactuca sativa HOM05D001916 ORTHO05D003272 3.2e-07 60.5 116 35.3
unitig_0.g2466 Utricularia gibba HOM05D001916 ORTHO05D003272 3.2e-07 60.5 140 32.1
Medtr2g078020 Medicago truncatula HOM05D000868 ORTHO05D000711 4.1e-07 60.1 119 34.5
FAN06G1813 Fragaria x ananassa HOM05D001916 ORTHO05D003272 7.0e-07 59.3 145 31.7
Peaxi162Scf00618g00626 Petunia axillaris HOM05D001916 ORTHO05D003272 7.0e-07 59.3 128 31.2
Zm00001eb159420 Zea mays HOM05D001916 ORTHO05D003272 9.2e-07 58.9 146 32.2
Migut.F00275 Erythranthe guttata HOM05D001916 ORTHO05D003272 1.2e-06 58.5 123 32.5
RcHm_v2.0_Chr1g0378891 Rosa chinensis HOM05D001916 ORTHO05D003272 1.2e-06 58.5 145 30.3
EL10Ac4g09088 Beta vulgaris HOM05D001789 ORTHO05D001755 1.6e-06 58.2 123 35.8
Cc01_g18750 Coffea canephora HOM05D001789 ORTHO05D001755 1.6e-06 58.2 113 35.4
arahy.Tifrunner.gnm1.ann1.MC01IH Arachis hypogaea HOM05D001916 ORTHO05D003272 2.7e-06 57.4 115 33.0
FvH4_7g30490 Fragaria vesca HOM05D001916 ORTHO05D003272 2.7e-06 57.4 145 31.0
FAN10G0131 Fragaria x ananassa HOM05D001916 ORTHO05D003272 2.7e-06 57.4 145 31.0
MBI06_g33537_MAGBIO Magnolia biondii HOM05D001916 ORTHO05D003272 2.7e-06 57.4 112 29.5
SalBow4G2106 Salvia bowleyana HOM05D001916 ORTHO05D003272 2.7e-06 57.4 135 33.3
CSS0028210 Camellia sinensis var. sinensis HOM05D001916 ORTHO05D003272 3.5e-06 57.0 84 38.1
FAN06G4606 Fragaria x ananassa HOM05D001916 ORTHO05D003272 3.5e-06 57.0 145 31.0
FAN10G0799 Fragaria x ananassa HOM05D001916 ORTHO05D003272 3.5e-06 57.0 145 31.0
Lsat_1_v5_gn_8_6441 Lactuca sativa HOM05D001916 ORTHO05D003272 3.5e-06 57.0 116 32.8
PGSC0003DMG400028904 Solanum tuberosum HOM05D001916 ORTHO05D003272 3.5e-06 57.0 132 32.6
Os01g0624500 Oryza sativa ssp. japonica HOM05D001916 ORTHO05D003272 4.6e-06 56.6 130 31.5
EL10Ac3g05391 Beta vulgaris HOM05D001916 ORTHO05D003272 6.0e-06 56.2 143 30.1
ECA238G4709 Erigeron canadensis HOM05D001916 ORTHO05D003272 6.0e-06 56.2 116 31.9
Lalb_Chr01g0016621 Lupinus albus HOM05D000868 ORTHO05D000711 6.0e-06 56.2 127 35.4
GSVIVG01018026001 Vitis vinifera HOM05D006451 ORTHO05D007680 6.0e-06 56.2 212 26.9
Glyma.16G176200 Glycine max HOM05D001916 ORTHO05D003272 7.8e-06 55.8 119 31.1
LjContig00312_ERROPOS870357g0000946 Lotus japonicus HOM05D001916 ORTHO05D003272 7.8e-06 55.8 126 32.5
Peaxi162Scf00282g00618 Petunia axillaris HOM05D001789 ORTHO05D001755 7.8e-06 55.8 198 29.8
SGA_v2.0_scaffold55G19713 Striga asiatica HOM05D001916 ORTHO05D003272 7.8e-06 55.8 125 32.8


User provided reference genes

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