Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 9.5e-84 313.5 167 100.0
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.6e-81 305.4 168 98.2
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 9.2e-79 297.0 172 94.8
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 3.8e-72 275.0 173 87.9
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 2.4e-71 272.3 173 87.9
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 3.3e-68 261.9 166 87.3
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 4.2e-55 218.4 169 74.0
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.1e-51 206.1 154 78.6
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 3.1e-50 202.2 169 69.2
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.2e-49 200.3 171 70.2
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 1.5e-49 199.9 164 70.7
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.7e-48 196.4 168 69.6
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 2.2e-48 196.1 168 67.3
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 1.1e-47 193.7 172 67.4
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 3.2e-47 192.2 166 68.1
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 7.1e-47 191.0 170 66.5
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 1.2e-46 190.3 170 67.1
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 1.2e-46 190.3 165 69.1
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 1.6e-46 189.9 165 67.9
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 2.1e-46 189.5 164 67.7
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 2.7e-46 189.1 164 67.1
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 6.0e-46 188.0 164 67.7
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 7.9e-46 187.6 158 67.7
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 6.7e-45 184.5 164 66.5
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 6.7e-45 184.5 164 66.5
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.1e-44 183.7 168 66.1
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 1.1e-44 183.7 163 66.9
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 1.9e-44 183.0 165 67.9
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 3.3e-44 182.2 161 64.6
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 4.3e-44 181.8 162 66.0
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 5.7e-44 181.4 155 69.7
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 7.4e-44 181.0 148 70.9
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 7.4e-44 181.0 166 66.9
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 1.6e-43 179.9 170 65.3
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.4e-42 176.8 171 63.2
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 4.1e-42 175.3 169 63.3
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 5.3e-42 174.9 170 62.4
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 9.0e-42 174.1 170 64.1
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 2.0e-41 172.9 156 62.8
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 3.4e-41 172.2 152 66.4
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 7.6e-41 171.0 166 62.7
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 1.3e-40 170.2 163 62.0
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 1.7e-40 169.9 152 64.5
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 3.8e-40 168.7 159 61.0
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 3.8e-40 168.7 147 66.0
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 5.5e-39 164.9 168 61.3
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 1.2e-38 163.7 185 58.9
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 2.7e-38 162.5 154 62.3
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 6.1e-38 161.4 164 56.7
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 6.1e-38 161.4 164 56.7
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 7.9e-38 161.0 174 57.5
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 1.4e-37 160.2 164 61.6
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 1.8e-37 159.8 161 62.1
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 3.9e-37 158.7 170 61.2
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 6.7e-37 157.9 140 67.1
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 8.8e-37 157.5 166 60.2
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 1.1e-36 157.1 156 61.5
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 1.1e-36 157.1 170 57.6
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 1.9e-36 156.4 142 64.8
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 2.5e-36 156.0 174 56.9
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 3.3e-36 155.6 152 61.8
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 3.3e-36 155.6 167 58.7
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 7.4e-36 154.5 154 63.6
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 1.3e-35 153.7 161 55.9
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 1.3e-35 153.7 155 61.9
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 1.7e-35 153.3 152 60.5
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 1.7e-35 153.3 152 60.5
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 2.8e-35 152.5 161 57.8
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 3.7e-35 152.1 153 59.5
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 3.7e-35 152.1 162 57.4
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 1.4e-34 150.2 128 70.3
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 1.8e-34 149.8 149 63.1
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 1.8e-34 149.8 158 57.6
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 4.1e-34 148.7 142 62.0
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 4.1e-34 148.7 132 65.9
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 6.9e-34 147.9 149 62.4
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 6.9e-34 147.9 202 50.5
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.5e-33 146.7 100 77.0
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 2.0e-33 146.4 149 61.1
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 5.9e-33 144.8 165 56.4
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 1.0e-32 144.1 96 87.5
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 1.0e-32 144.1 144 61.8
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.0e-32 144.1 154 60.4
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.0e-32 144.1 154 60.4
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 1.3e-32 143.7 158 58.2
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.7e-32 143.3 154 60.4
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 1.7e-32 143.3 151 58.3
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 1.7e-32 143.3 176 55.1
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 2.9e-32 142.5 148 58.1
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 2.9e-32 142.5 162 56.2
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 3.8e-32 142.1 138 62.3
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 3.8e-32 142.1 138 62.3
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 3.8e-32 142.1 154 59.7
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 3.2e-31 139.0 190 50.5
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 4.2e-31 138.7 157 58.6
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 4.2e-31 138.7 133 61.7
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 7.2e-31 137.9 121 66.9
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 2.7e-30 136.0 158 53.2
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 7.9e-30 134.4 158 57.0
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 7.9e-30 134.4 154 55.8
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 1.4e-29 133.7 125 61.6
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 1.1e-28 130.6 173 51.4
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 9.7e-28 127.5 149 54.4
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 2.2e-27 126.3 167 50.9
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 2.8e-27 125.9 150 55.3
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 6.3e-27 124.8 145 53.8
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 8.2e-27 124.4 147 49.7
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 4.5e-25 118.6 123 58.5
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 5.0e-24 115.2 161 49.1
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 8.5e-24 114.4 152 45.4
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 1.4e-23 113.6 156 48.1
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 1.4e-23 113.6 165 47.3
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 1.6e-22 110.2 112 64.3
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 2.7e-22 109.4 149 45.6
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 2.7e-22 109.4 92 70.7
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.4e-21 107.1 124 55.6
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 8.8e-21 104.4 149 50.3
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 8.8e-21 104.4 72 76.4
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 8.8e-21 104.4 72 76.4
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 1.5e-20 103.6 113 58.4
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 1.5e-20 103.6 147 50.3
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.0e-20 103.2 73 72.6
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.6e-20 102.8 72 75.0
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 3.3e-20 102.4 169 46.2
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 4.4e-20 102.1 154 46.1
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 2.8e-19 99.4 112 56.2
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.8e-19 98.6 54 90.7
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 1.4e-18 97.1 112 55.4
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 2.4e-18 96.3 107 53.3
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 1.0e-16 90.9 147 46.3
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 1.3e-16 90.5 81 61.7
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 1.3e-16 90.5 161 42.2
Gohir.D09G247201 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.7e-16 90.1 68 77.9
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 3.8e-16 89.0 96 55.2
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 1.5e-15 87.0 89 53.9
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 4.2e-15 85.5 169 43.2
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 8.0e-14 81.3 104 47.1
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 1.8e-13 80.1 159 39.6
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 2.3e-13 79.7 84 61.9
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 2.2e-11 73.2 85 56.5
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 2.8e-11 72.8 86 60.5
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 1.6e-09 67.0 47 68.1
Cpa.g.sc13.128 Carica papaya HOM05D004927 ORTHO05D005798 3.8e-08 62.4 59 67.8
BraA02t09201Z Brassica rapa HOM05D004927 ORTHO05D005798 4.2e-07 58.9 91 49.5


User provided reference genes

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