Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.3e-173 612.8 294 100.0
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 3.9e-165 584.7 319 90.0
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 5.6e-164 580.9 317 89.9
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 2.0e-137 492.7 292 81.8
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 3.1e-130 468.8 315 72.4
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 5.3e-130 468.0 326 69.9
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.6e-129 466.5 316 72.2
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 2.9e-128 462.2 315 70.5
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 8.5e-128 460.7 317 69.4
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.1e-127 460.3 316 69.6
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 1.1e-127 460.3 315 70.5
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 1.5e-127 459.9 324 70.1
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 2.5e-127 459.1 316 69.3
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 5.5e-127 458.0 316 68.4
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 2.1e-126 456.1 322 69.3
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 2.1e-126 456.1 316 68.7
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 2.7e-126 455.7 316 69.0
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 1.8e-125 453.0 318 70.8
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 6.7e-125 451.1 315 68.6
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 7.5e-124 447.6 315 68.3
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 2.8e-123 445.7 315 65.7
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 1.1e-122 443.7 315 67.3
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 9.1e-122 440.7 315 66.3
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 2.0e-121 439.5 316 67.4
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 2.7e-121 439.1 316 65.2
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 2.7e-121 439.1 316 66.1
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 4.5e-121 438.3 316 65.2
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 7.7e-121 437.6 315 64.8
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 7.7e-121 437.6 316 68.0
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 2.9e-120 435.6 315 65.1
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 5.0e-120 434.9 315 65.1
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 1.5e-119 433.3 316 66.1
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 7.2e-119 431.0 315 67.6
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 9.4e-119 430.6 316 64.6
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 1.2e-118 430.3 316 66.5
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 1.6e-118 429.9 321 65.1
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 2.7e-118 429.1 316 64.9
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 2.7e-118 429.1 307 68.4
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 3.6e-118 428.7 316 63.9
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 3.6e-118 428.7 315 63.2
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 2.3e-117 426.0 316 64.6
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 3.0e-117 425.6 301 68.1
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 5.2e-117 424.9 316 64.9
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 2.0e-116 422.9 316 62.3
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 2.0e-116 422.9 315 62.9
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 3.4e-116 422.2 316 61.4
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 4.4e-116 421.8 315 63.5
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 5.7e-116 421.4 316 64.2
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 1.7e-115 419.9 316 63.3
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 3.7e-115 418.7 302 67.2
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 4.8e-115 418.3 369 57.7
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.1e-114 417.2 319 63.3
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 2.4e-114 416.0 318 63.2
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 3.1e-114 415.6 293 65.2
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 5.4e-114 414.8 316 63.3
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 7.0e-114 414.5 319 63.0
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 1.2e-113 413.7 316 63.0
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 1.2e-113 413.7 316 61.4
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 2.0e-113 412.9 315 61.6
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 3.5e-113 412.1 315 63.2
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 4.5e-113 411.8 316 61.7
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 5.9e-113 411.4 319 62.7
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 5.9e-113 411.4 321 63.2
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 1.3e-112 410.2 318 63.2
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 2.9e-112 409.1 315 61.0
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 8.5e-112 407.5 315 61.3
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 1.5e-111 406.8 316 61.4
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 1.9e-111 406.4 318 62.6
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 1.9e-111 406.4 316 61.4
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 1.9e-111 406.4 318 60.1
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 4.2e-111 405.2 316 60.4
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 4.2e-111 405.2 317 62.1
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.2e-111 405.2 316 61.1
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 7.2e-111 404.4 317 59.9
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 9.4e-111 404.1 316 61.7
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 9.4e-111 404.1 316 61.1
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 1.2e-110 403.7 315 60.3
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 2.1e-110 402.9 316 61.1
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 2.7e-110 402.5 314 61.5
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 2.7e-110 402.5 321 61.7
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 2.7e-110 402.5 320 60.3
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 2.7e-110 402.5 338 58.3
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 3.6e-110 402.1 316 61.1
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 8.0e-110 401.0 313 61.3
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 1.0e-109 400.6 316 59.8
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 2.3e-109 399.4 331 57.4
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 4.0e-109 398.7 367 54.5
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 4.0e-109 398.7 273 72.9
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 5.2e-109 398.3 318 60.1
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 1.5e-108 396.7 316 60.1
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 2.6e-108 396.0 316 59.5
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 3.4e-108 395.6 318 60.4
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 4.4e-108 395.2 317 59.0
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 2.2e-107 392.9 316 59.2
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 8.3e-107 391.0 317 58.4
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 4.1e-106 388.7 316 59.5
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 4.1e-106 388.7 316 59.2
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 4.1e-106 388.7 315 59.0
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 5.4e-106 388.3 316 59.2
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 9.2e-106 387.5 316 60.1
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 9.2e-106 387.5 316 59.5
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 9.2e-106 387.5 316 59.2
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 1.2e-105 387.1 316 57.6
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 1.6e-105 386.7 316 58.9
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 1.6e-105 386.7 316 58.9
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 2.0e-105 386.3 316 59.8
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 2.7e-105 386.0 316 59.8
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 4.5e-105 385.2 316 59.8
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 7.7e-105 384.4 315 58.1
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 7.7e-105 384.4 315 58.1
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 2.3e-104 382.9 315 58.1
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 2.9e-104 382.5 316 59.8
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 3.8e-104 382.1 294 63.3
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 3.8e-104 382.1 319 58.9
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 6.6e-104 381.3 316 60.1
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 7.3e-103 377.9 316 58.2
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.8e-101 373.2 316 57.0
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 2.6e-100 369.4 324 56.5
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 1.1e-98 364.0 315 57.5
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.8e-98 363.2 296 59.1
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 2.4e-98 362.8 266 64.7
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 1.6e-97 360.1 389 48.1
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 2.0e-97 359.8 335 54.6
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.7e-97 359.4 288 60.4
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 6.6e-96 354.8 297 57.2
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.5e-95 352.8 404 46.3
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 5.6e-95 351.7 297 56.9
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 3.1e-93 345.9 317 53.9
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 4.0e-93 345.5 319 53.9
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 3.4e-92 342.4 317 52.4
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 6.4e-91 338.2 334 51.2
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.4e-90 337.0 297 55.6
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 1.6e-89 333.6 298 56.7
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 4.7e-86 322.0 321 50.5
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 1.4e-85 320.5 236 66.5
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 6.8e-85 318.2 275 57.1
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 2.3e-80 303.1 182 76.9
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 4.3e-79 298.9 321 50.5
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 1.7e-75 287.0 204 66.7
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 6.4e-75 285.0 199 66.8
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 1.4e-74 283.9 361 40.4
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.0e-72 276.2 282 53.9
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 3.6e-70 269.2 185 68.1
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 5.8e-60 235.3 220 51.8
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 6.4e-59 231.9 187 60.4
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 6.4e-59 231.9 165 65.5
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 1.0e-56 224.6 144 71.5
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 9.6e-55 218.0 151 66.9
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 2.4e-45 186.8 144 59.7
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 2.5e-42 176.8 132 63.6
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 8.5e-35 151.8 140 52.1
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 1.4e-34 151.0 111 61.3
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 5.5e-34 149.1 94 73.4
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 7.2e-34 148.7 93 71.0
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 2.3e-32 143.7 68 95.6
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 3.7e-30 136.3 178 44.9
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 1.9e-26 124.0 143 46.9
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 1.6e-25 120.9 104 57.7
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 1.6e-25 120.9 90 61.1
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 4.6e-25 119.4 75 69.3
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 1.8e-24 117.5 68 76.5
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 4.8e-22 109.4 75 65.3
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 5.0e-19 99.4 58 75.9
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 8.5e-19 98.6 86 62.8
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 3.7e-14 83.2 72 55.6
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 1.1e-10 71.6 45 68.9
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 2.3e-08 63.9 56 55.4
Medtr8g066150 Medicago truncatula HOM05D004085 ORTHO05D263454 6.7e-08 62.4 56 55.4
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 1.2e-07 61.6 55 49.1


User provided reference genes

Program Settings