Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A11G033350 Gossypium hirsutum HOM05D006637 ORTHO05D001736 4.5e-49 197.6 99 100.0
Gohir.D11G036700 Gossypium hirsutum HOM05D006637 ORTHO05D001736 1.3e-48 196.1 98 99.0
Gorai.007G039500 Gossypium raimondii HOM05D006637 ORTHO05D001736 5.0e-48 194.1 98 98.0
Thecc.03G102400 Theobroma cacao HOM05D006637 ORTHO05D001736 2.1e-14 82.4 88 53.4
Duzib205G1030 Durio zibethinus HOM05D006637 ORTHO05D001736 8.1e-14 80.5 82 58.5
MD06G1225400 Malus domestica HOM05D006637 ORTHO05D001736 4.0e-13 78.2 79 53.2
Ciclev10023416m.g Citrus clementina HOM05D006637 ORTHO05D001736 5.2e-13 77.8 83 54.2
COL.COLO4_06852 Corchorus olitorius HOM05D006637 ORTHO05D001736 6.8e-13 77.4 91 49.5
MD14G1212300 Malus domestica HOM05D006637 ORTHO05D001736 1.2e-12 76.6 99 45.5
Prupe.5G205600 Prunus persica HOM05D006637 ORTHO05D001736 1.2e-12 76.6 93 44.1
Sc10g0009690 Simmondsia chinensis HOM05D006637 ORTHO05D001736 2.6e-12 75.5 111 45.0
AUR62008536 Chenopodium quinoa HOM05D006637 ORTHO05D001736 7.5e-12 73.9 89 51.7
Duzib068G0311 Durio zibethinus HOM05D006637 ORTHO05D001736 7.5e-12 73.9 82 51.2
RcHm_v2.0_Chr7g0183151 Rosa chinensis HOM05D006637 ORTHO05D001736 7.5e-12 73.9 76 55.3
Atru.chr9.567 Acer truncatum HOM05D006637 ORTHO05D001736 1.3e-11 73.2 105 43.8
AUR62021555 Chenopodium quinoa HOM05D006637 ORTHO05D001736 1.3e-11 73.2 88 51.1
TWI81G0402 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 1.3e-11 73.2 89 48.3
Sc04g0004350 Simmondsia chinensis HOM05D006637 ORTHO05D001736 2.2e-11 72.4 82 47.6
Cfa019342 Carpinus fangiana HOM05D000824 ORTHO05D003555 2.9e-11 72.0 72 56.9
Haze_07733 Corylus avellana HOM05D006637 ORTHO05D001736 2.9e-11 72.0 72 56.9
CsaV3_1G002960 Cucumis sativus L. HOM05D006637 ORTHO05D001736 3.7e-11 71.6 67 55.2
FvH4_5g13780 Fragaria vesca HOM05D006637 ORTHO05D001736 3.7e-11 71.6 73 56.2
FAN08G0389 Fragaria x ananassa HOM05D006637 ORTHO05D001736 3.7e-11 71.6 73 56.2
FAN18G2922 Fragaria x ananassa HOM05D006637 ORTHO05D001736 3.7e-11 71.6 73 56.2
MELO3C017227.2 Cucumis melo HOM05D006637 ORTHO05D001736 1.1e-10 70.1 75 50.7
Gohir.D12G186000 Gossypium hirsutum HOM05D006637 ORTHO05D001736 1.1e-10 70.1 99 43.4
Gorai.008G199400 Gossypium raimondii HOM05D006637 ORTHO05D001736 1.1e-10 70.1 99 43.4
Sed0008450 Sechium edule HOM05D006637 ORTHO05D001736 1.4e-10 69.7 79 55.7
CiPaw.11G054000 Carya illinoinensis HOM05D006637 ORTHO05D001736 1.9e-10 69.3 77 55.8
FAN13G0480 Fragaria x ananassa HOM05D006637 ORTHO05D001736 1.9e-10 69.3 73 54.8
Sed0021860 Sechium edule HOM05D006637 ORTHO05D001736 2.4e-10 68.9 73 57.5
TWI15G0882 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 2.4e-10 68.9 90 44.4
ClCG06G015610 Citrullus lanatus HOM05D006637 ORTHO05D001736 4.1e-10 68.2 77 51.9
Gohir.A12G182900 Gossypium hirsutum HOM05D006637 ORTHO05D001736 4.1e-10 68.2 99 42.4
CSS0033309 Camellia sinensis var. sinensis HOM05D006637 ORTHO05D001736 5.4e-10 67.8 72 48.6
Cpa.g.sc10.158 Carica papaya HOM05D006637 ORTHO05D001736 9.2e-10 67.0 98 42.9
DCAR_025433 Daucus carota HOM05D003787 ORTHO05D001736 1.2e-09 66.6 72 52.8
Sabra12G0044700 Salix brachista HOM05D006637 ORTHO05D001736 1.6e-09 66.2 86 45.3
CSS0036361 Camellia sinensis var. sinensis HOM05D006637 ORTHO05D001736 2.7e-09 65.5 107 42.1
Potri.012G061700 Populus trichocarpa HOM05D006637 ORTHO05D001736 2.7e-09 65.5 94 44.7
Sc12g0007280 Simmondsia chinensis HOM05D006637 ORTHO05D001736 3.5e-09 65.1 85 45.9
Manes.06G084300 Manihot esculenta HOM05D006637 ORTHO05D001736 6.0e-09 64.3 89 47.2
Actinidia04823 Actinidia chinensis HOM05D006637 ORTHO05D001736 1.3e-08 63.2 53 56.6
Aqoxy3G03685 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 1.7e-08 62.8 73 49.3
CDE02G2765 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 6.6e-08 60.8 75 44.0
Manes.14G086000 Manihot esculenta HOM05D006637 ORTHO05D001736 6.6e-08 60.8 86 46.5
PSO017G1216 Papaver somniferum HOM05D006637 ORTHO05D001736 6.6e-08 60.8 56 51.8
PSO478G3423 Papaver somniferum HOM05D006637 ORTHO05D001736 6.6e-08 60.8 56 51.8
Rhsim12G0148600 Rhododendron simsii HOM05D006637 ORTHO05D001736 6.6e-08 60.8 104 41.3
Cc00_g04710 Coffea canephora HOM05D006637 ORTHO05D001736 1.1e-07 60.1 68 48.5
TWI60G0888 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 2.5e-07 58.9 97 41.2
Phvul.009G201900 Phaseolus vulgaris HOM05D006637 ORTHO05D001736 3.3e-07 58.5 72 45.8
vmacro16493 Vaccinium macrocarpon HOM05D006637 ORTHO05D001736 3.3e-07 58.5 47 53.2
Aqoxy3G00509 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 4.3e-07 58.2 66 45.5
CDE05G3272 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 4.3e-07 58.2 70 45.7
Glyma.06G204000 Glycine max HOM05D006637 ORTHO05D001736 4.3e-07 58.2 94 41.5
HPP92_003197 Vanilla planifolia HOM05D003787 ORTHO05D001736 4.3e-07 58.2 51 52.9
Glyma.04G162200 Glycine max HOM05D006637 ORTHO05D001736 5.6e-07 57.8 75 44.0
ATR0177G031 Amborella trichopoda HOM05D003787 ORTHO05D001736 7.3e-07 57.4 78 43.6
Lj4g0016086 Lotus japonicus HOM05D006637 ORTHO05D001736 7.3e-07 57.4 49 57.1
Os07g0298100 Oryza sativa ssp. japonica HOM05D003787 ORTHO05D001736 7.3e-07 57.4 58 48.3
Lj5C102T22 Lonicera japonica HOM05D006637 ORTHO05D001736 9.5e-07 57.0 102 39.2
Potri.015G057200 Populus trichocarpa HOM05D006637 ORTHO05D001736 1.2e-06 56.6 102 41.2
Sabra17G0083100 Salix brachista HOM05D003787 ORTHO05D001736 1.2e-06 56.6 82 41.5
THA.LOC104808038 Tarenaya hassleriana HOM05D006637 ORTHO05D001736 1.2e-06 56.6 112 39.3
CsaV3_5G033340 Cucumis sativus L. HOM05D003787 ORTHO05D001736 1.6e-06 56.2 63 49.2
Hund09916 Selenicereus undatus HOM05D006637 ORTHO05D001736 1.6e-06 56.2 84 44.0
Carub.0002s2101 Capsella rubella HOM05D006637 ORTHO05D001736 2.1e-06 55.8 62 50.0
Cpa.g.sc14.178 Carica papaya HOM05D003787 ORTHO05D001736 2.1e-06 55.8 66 45.5
Nitab4.5_0003841g0060 Nicotiana tabacum HOM05D003787 ORTHO05D001736 2.1e-06 55.8 96 40.6
Oeu044877.1 Olea europaea HOM05D006637 ORTHO05D001736 2.1e-06 55.8 81 44.4
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 2.8e-06 55.5 84 41.7
PGR083G0945 Punica granatum HOM05D006637 ORTHO05D001736 2.8e-06 55.5 101 39.6
SHI06685 Sapria himalayana HOM05D003787 ORTHO05D001736 2.8e-06 55.5 73 43.8
Sp5g29400 Schrenkiella parvula HOM05D006637 ORTHO05D001736 2.8e-06 55.5 62 48.4
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 3.6e-06 55.1 76 42.1
CDE04G2454 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 3.6e-06 55.1 55 41.8
HPP92_007004 Vanilla planifolia HOM05D003787 ORTHO05D001736 3.6e-06 55.1 51 52.9
PSO478G0913 Papaver somniferum HOM05D006637 ORTHO05D001736 4.7e-06 54.7 95 40.0
PGSC0003DMG400024635 Solanum tuberosum HOM05D006637 ORTHO05D001736 4.7e-06 54.7 72 45.8
TAR371G0370 Trochodendron aralioides HOM05D006637 ORTHO05D001736 4.7e-06 54.7 70 42.9
CARHR067480 Cardamine hirsuta HOM05D006637 ORTHO05D001736 6.2e-06 54.3 62 48.4
Thhalv10018880m.g Eutrema salsugineum HOM05D006637 ORTHO05D001736 6.2e-06 54.3 65 47.7
Nitab4.5_0007320g0010 Nicotiana tabacum HOM05D003787 ORTHO05D001736 6.2e-06 54.3 96 39.6
Thecc.02G330000 Theobroma cacao HOM05D003787 ORTHO05D001736 6.2e-06 54.3 59 49.2
GSVIVG01012223001 Vitis vinifera HOM05D003787 ORTHO05D001736 6.2e-06 54.3 78 41.0
BcaC08g46854 Brassica carinata HOM05D006637 ORTHO05D001736 8.1e-06 53.9 69 46.4
MD17G1059900 Malus domestica HOM05D003787 ORTHO05D001736 8.1e-06 53.9 86 41.9
Manes.02G055200 Manihot esculenta HOM05D003787 ORTHO05D001736 8.1e-06 53.9 84 41.7
Sopen02g033550 Solanum pennellii HOM05D003787 ORTHO05D001736 8.1e-06 53.9 101 36.6


User provided reference genes

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