Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.8e-75 285.8 141 100.0
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 2.6e-21 105.9 138 47.8
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 3.1e-19 99.0 136 47.8
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 4.5e-18 95.1 149 40.9
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 7.7e-18 94.4 137 45.3
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 7.7e-18 94.4 143 44.8
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.9e-17 92.4 130 46.9
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 2.9e-17 92.4 130 46.9
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 1.1e-16 90.5 134 44.0
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 1.0e-14 84.0 85 52.9
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 1.4e-14 83.6 140 41.4
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 1.1e-13 80.5 122 43.4
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 1.1e-13 80.5 151 39.7
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.0e-13 79.7 123 40.7
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 2.6e-13 79.3 95 50.5
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 2.6e-13 79.3 89 52.8
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 2.6e-13 79.3 85 50.6
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 3.3e-13 79.0 115 44.3
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 4.4e-13 78.6 130 39.2
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 4.4e-13 78.6 130 39.2
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 5.7e-13 78.2 158 38.6
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 5.7e-13 78.2 134 41.0
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 7.4e-13 77.8 129 40.3
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 7.4e-13 77.8 129 40.3
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 7.4e-13 77.8 136 40.4
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 7.4e-13 77.8 107 44.9
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 1.3e-12 77.0 131 42.0
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 1.7e-12 76.6 90 47.8
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 1.7e-12 76.6 80 55.0
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.7e-12 76.6 80 55.0
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.7e-12 76.6 80 55.0
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.7e-12 76.6 80 55.0
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 1.7e-12 76.6 88 50.0
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.7e-12 75.5 150 37.3
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.7e-12 75.5 150 37.3
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 3.7e-12 75.5 119 45.4
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 4.8e-12 75.1 81 50.6
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 6.3e-12 74.7 96 52.1
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 6.3e-12 74.7 89 51.7
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 6.3e-12 74.7 86 48.8
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 8.2e-12 74.3 80 48.8
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 8.2e-12 74.3 80 48.8
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 8.2e-12 74.3 98 45.9
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.1e-11 73.9 128 38.3
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 1.1e-11 73.9 116 45.7
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.1e-11 73.9 131 42.0
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 1.1e-11 73.9 99 49.5
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 2.4e-11 72.8 102 44.1
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 2.4e-11 72.8 109 45.0
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 2.4e-11 72.8 89 52.8
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 3.1e-11 72.4 96 49.0
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 4.1e-11 72.0 126 37.3
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 4.1e-11 72.0 118 44.9
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 4.1e-11 72.0 143 38.5
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 4.1e-11 72.0 71 52.1
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 5.3e-11 71.6 88 51.1
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 5.3e-11 71.6 88 50.0
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 7.0e-11 71.2 86 45.3
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 7.0e-11 71.2 75 54.7
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 7.0e-11 71.2 89 50.6
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 7.0e-11 71.2 95 50.5
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 9.1e-11 70.9 92 46.7
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 9.1e-11 70.9 98 42.9
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 9.1e-11 70.9 91 49.5
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 1.6e-10 70.1 97 47.4
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 2.0e-10 69.7 109 41.3
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 2.0e-10 69.7 109 41.3
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 2.0e-10 69.7 125 38.4
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 2.6e-10 69.3 86 46.5
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 2.6e-10 69.3 95 45.3
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 3.5e-10 68.9 105 42.9
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 3.5e-10 68.9 105 42.9
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 3.5e-10 68.9 78 48.7
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 4.5e-10 68.6 88 48.9
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 4.5e-10 68.6 94 47.9
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 4.5e-10 68.6 100 45.0
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 4.5e-10 68.6 95 44.2
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 4.5e-10 68.6 88 46.6
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 4.5e-10 68.6 94 45.7
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 4.5e-10 68.6 99 44.4
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 5.9e-10 68.2 108 42.6
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 5.9e-10 68.2 88 48.9
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 7.7e-10 67.8 96 43.8
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 7.7e-10 67.8 103 46.6
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 1.0e-09 67.4 110 40.9
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 1.3e-09 67.0 108 41.7
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 1.3e-09 67.0 108 41.7
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 1.3e-09 67.0 88 46.6
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 1.3e-09 67.0 75 49.3
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 1.3e-09 67.0 103 40.8
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 1.3e-09 67.0 93 43.0
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 1.7e-09 66.6 96 41.7
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 1.7e-09 66.6 96 41.7
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 1.7e-09 66.6 96 41.7
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 1.7e-09 66.6 107 43.0
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 1.7e-09 66.6 80 47.5
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 2.2e-09 66.2 100 42.0
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 2.9e-09 65.9 107 42.1
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 3.8e-09 65.5 91 45.1
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 3.8e-09 65.5 97 43.3
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 6.5e-09 64.7 82 46.3
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 8.5e-09 64.3 99 45.5
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 1.1e-08 63.9 96 45.8
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 1.1e-08 63.9 83 47.0
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 1.5e-08 63.5 80 41.2
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 1.5e-08 63.5 103 44.7
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 1.5e-08 63.5 137 32.1
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 1.5e-08 63.5 112 37.5
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.5e-08 63.5 111 38.7
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 1.9e-08 63.2 79 46.8
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 2.5e-08 62.8 112 38.4
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 2.5e-08 62.8 99 42.4
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 3.2e-08 62.4 88 43.2
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 5.5e-08 61.6 146 33.6
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 7.2e-08 61.2 81 46.9
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 9.4e-08 60.8 99 41.4
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 9.4e-08 60.8 89 42.7
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 1.2e-07 60.5 95 45.3
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 1.2e-07 60.5 58 56.9
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.6e-07 60.1 50 62.0
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 1.6e-07 60.1 88 42.0
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 1.6e-07 60.1 66 51.5
Gohir.D03G082400 Gossypium hirsutum HOM05D005006 ORTHO05D005903 6.1e-07 58.2 95 43.2
Gorai.003G081300 Gossypium raimondii HOM05D005006 ORTHO05D005903 6.1e-07 58.2 95 43.2
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 1.4e-06 57.0 65 47.7
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 1.4e-06 57.0 44 59.1
Gohir.A02G102000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 3.0e-06 55.8 95 42.1
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 3.0e-06 55.8 75 44.0
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 4.0e-06 55.5 102 38.2
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 5.2e-06 55.1 94 38.3
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 6.7e-06 54.7 129 35.7
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 6.7e-06 54.7 94 38.3
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 8.8e-06 54.3 85 40.0


User provided reference genes

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