Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 4.1e-184 647.9 319 100.0
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 7.3e-149 530.8 275 94.2
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 1.6e-148 529.6 275 94.5
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 3.0e-118 429.1 276 78.3
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 1.5e-117 426.8 278 78.1
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 6.4e-105 384.8 274 74.1
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 7.1e-104 381.3 274 73.0
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.9e-93 346.7 204 82.4
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 9.3e-88 327.8 285 62.8
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 5.7e-85 318.5 282 61.0
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 9.7e-85 317.8 259 64.5
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 2.2e-84 316.6 294 57.8
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 3.7e-84 315.8 266 63.5
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 4.8e-84 315.5 268 61.2
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 1.8e-83 313.5 251 65.7
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 6.9e-83 311.6 271 60.1
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 2.0e-82 310.1 264 61.4
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 2.0e-82 310.1 278 62.2
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 1.9e-80 303.5 253 64.0
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 3.2e-80 302.8 264 61.7
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 3.2e-80 302.8 268 61.6
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 4.2e-80 302.4 272 59.6
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 7.2e-80 301.6 272 59.2
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 9.4e-80 301.2 284 58.5
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 9.4e-80 301.2 253 62.1
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 3.6e-79 299.3 272 59.6
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 7.9e-79 298.1 256 61.7
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 7.9e-79 298.1 281 59.1
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 1.0e-78 297.7 263 62.0
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 1.0e-78 297.7 262 60.7
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 1.0e-78 297.7 272 59.2
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 2.3e-78 296.6 262 59.9
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 2.3e-78 296.6 265 59.6
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 2.3e-78 296.6 283 58.3
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 3.0e-78 296.2 253 64.8
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 3.0e-78 296.2 274 60.6
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 3.0e-78 296.2 265 59.6
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 6.7e-78 295.0 272 60.7
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 6.7e-78 295.0 266 60.5
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 8.8e-78 294.7 254 62.2
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 2.0e-77 293.5 263 59.3
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 2.0e-77 293.5 289 57.4
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 2.5e-77 293.1 262 59.2
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 3.3e-77 292.7 263 59.7
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 4.3e-77 292.4 259 59.5
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 5.7e-77 292.0 218 67.0
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 9.7e-77 291.2 268 58.2
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 1.3e-76 290.8 263 59.7
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 1.3e-76 290.8 278 57.6
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 1.3e-76 290.8 284 56.0
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 2.8e-76 289.7 271 56.5
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 3.7e-76 289.3 261 59.8
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 3.7e-76 289.3 261 59.8
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 3.7e-76 289.3 267 58.4
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 6.3e-76 288.5 271 59.4
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 6.3e-76 288.5 277 56.3
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 8.2e-76 288.1 291 54.3
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 8.2e-76 288.1 258 60.5
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 1.1e-75 287.7 273 57.5
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 1.4e-75 287.3 288 52.4
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 1.4e-75 287.3 304 53.3
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 1.8e-75 287.0 264 56.4
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 4.1e-75 285.8 274 57.3
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 4.1e-75 285.8 268 59.7
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 9.1e-75 284.6 265 57.7
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 1.2e-74 284.3 273 57.5
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 3.4e-74 282.7 261 57.5
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 4.5e-74 282.3 261 59.0
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 7.7e-74 281.6 213 67.6
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 6.5e-73 278.5 201 67.2
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 6.5e-73 278.5 201 67.2
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 6.5e-73 278.5 215 67.4
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 8.5e-73 278.1 214 65.0
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 3.2e-72 276.2 273 58.2
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 7.2e-72 275.0 194 66.5
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 7.2e-72 275.0 293 52.6
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 9.4e-72 274.6 273 56.4
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 1.2e-71 274.2 211 66.8
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 1.2e-71 274.2 285 52.6
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 3.6e-71 272.7 278 56.8
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 4.7e-71 272.3 262 56.9
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 6.1e-71 271.9 272 54.0
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 6.1e-71 271.9 271 55.7
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 6.1e-71 271.9 197 68.5
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 6.1e-71 271.9 285 54.0
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 1.0e-70 271.2 291 52.9
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 1.4e-70 270.8 208 64.9
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 1.8e-70 270.4 209 65.6
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 1.8e-70 270.4 221 61.1
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 3.0e-70 269.6 275 54.9
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 6.7e-70 268.5 286 53.1
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 1.5e-69 267.3 275 53.8
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 1.5e-69 267.3 275 53.8
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 2.0e-69 266.9 311 49.8
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 2.6e-69 266.5 283 51.2
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 3.3e-69 266.2 217 63.6
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 3.3e-69 266.2 217 63.6
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 1.7e-68 263.8 279 53.4
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 4.8e-68 262.3 277 50.5
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 1.1e-67 261.2 212 62.7
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 1.8e-67 260.4 262 53.1
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 3.5e-66 256.1 279 52.3
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 8.5e-65 251.5 207 60.4
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 7.2e-64 248.4 207 59.9
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 3.0e-62 243.0 266 51.1
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 1.3e-60 237.7 207 59.4
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 1.8e-59 233.8 196 58.7
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 1.0e-57 228.0 207 60.9
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 3.8e-57 226.1 209 60.3
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 5.0e-57 225.7 196 57.1
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 1.1e-56 224.6 197 55.3
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 2.2e-52 210.3 193 54.4
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 4.1e-51 206.1 198 55.6
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 1.2e-50 204.5 206 52.4
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 2.9e-49 199.9 159 63.5
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 1.5e-40 171.0 204 46.1
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 1.9e-40 170.6 209 46.9
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 2.5e-40 170.2 212 48.6
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 8.0e-39 165.2 102 80.4
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 5.2e-38 162.5 217 42.4
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.2e-37 161.4 168 54.2
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 1.5e-37 161.0 222 45.5
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 2.0e-37 160.6 233 39.1
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 4.4e-37 159.5 126 62.7
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 1.8e-35 154.1 169 50.9
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 5.4e-27 125.9 112 58.0
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 3.4e-21 106.7 70 67.1
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 2.9e-20 103.6 131 44.3
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 7.1e-19 99.0 142 43.7
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 3.0e-17 93.6 62 64.5
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 3.9e-17 93.2 141 39.7
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 5.6e-16 89.4 78 57.7
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 1.1e-14 85.1 73 56.2
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.2e-13 81.6 96 44.8


User provided reference genes

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