Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 4.1e-179 631.3 332 100.0
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.8e-175 618.6 332 95.8
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.6e-165 585.5 332 92.8
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 4.7e-151 538.1 342 81.3
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 1.9e-144 516.2 361 76.2
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 4.3e-144 515.0 339 79.6
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.1e-131 473.8 345 71.0
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 1.4e-131 473.4 330 75.5
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.4e-131 473.4 345 71.0
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 5.4e-131 471.5 345 70.7
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 6.0e-130 468.0 330 72.4
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 1.3e-127 460.3 292 77.4
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 6.2e-127 458.0 292 76.4
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 6.9e-126 454.5 338 72.2
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 1.7e-124 449.9 290 75.2
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.7e-124 449.9 338 71.9
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 1.7e-124 449.9 290 75.9
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 4.9e-124 448.4 294 72.4
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 6.4e-124 448.0 338 71.0
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 1.9e-123 446.4 292 73.3
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 1.9e-123 446.4 292 73.3
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 1.9e-123 446.4 290 74.8
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 1.9e-123 446.4 290 73.8
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 2.4e-123 446.0 290 73.4
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 2.4e-123 446.0 337 66.2
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 1.2e-122 443.7 296 70.3
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 4.6e-122 441.8 296 72.3
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 2.3e-121 439.5 330 66.4
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 3.0e-121 439.1 295 72.2
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 3.0e-121 439.1 289 72.3
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 3.9e-121 438.7 292 70.5
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 3.9e-121 438.7 289 72.3
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.1e-120 437.2 290 72.4
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 1.5e-120 436.8 299 70.6
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 1.9e-120 436.4 341 68.3
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 1.9e-120 436.4 293 73.0
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 2.5e-120 436.0 290 71.7
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 3.3e-120 435.6 296 70.6
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 5.6e-120 434.9 292 70.2
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 9.6e-120 434.1 330 69.4
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 9.6e-120 434.1 290 71.7
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 1.3e-119 433.7 295 72.2
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 1.6e-119 433.3 291 72.2
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 2.8e-119 432.6 294 71.4
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 3.7e-119 432.2 294 70.4
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 4.8e-119 431.8 294 71.4
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 4.8e-119 431.8 294 71.4
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 4.8e-119 431.8 290 71.0
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 8.2e-119 431.0 295 71.5
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 8.2e-119 431.0 294 71.1
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 8.2e-119 431.0 294 70.7
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 1.4e-118 430.3 294 71.8
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.1e-118 429.1 290 71.7
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 3.1e-118 429.1 290 70.3
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 4.0e-118 428.7 297 70.7
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 5.3e-118 428.3 290 71.7
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 6.9e-118 427.9 297 68.7
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 9.0e-118 427.6 295 71.2
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 9.0e-118 427.6 290 72.1
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 1.2e-117 427.2 290 69.0
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 1.5e-117 426.8 290 70.0
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 2.0e-117 426.4 306 67.6
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 4.5e-117 425.2 293 70.0
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 4.5e-117 425.2 301 69.8
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 4.5e-117 425.2 297 71.0
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 4.5e-117 425.2 293 72.0
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 5.8e-117 424.9 302 67.9
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 1.3e-116 423.7 296 71.3
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 1.3e-116 423.7 294 68.4
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 2.2e-116 422.9 290 72.1
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 2.2e-116 422.9 308 68.2
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 2.9e-116 422.5 296 70.9
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 2.9e-116 422.5 293 70.0
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 6.5e-116 421.4 294 71.1
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 8.4e-116 421.0 293 70.0
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 1.9e-115 419.9 297 70.0
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 3.2e-115 419.1 297 69.7
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 3.2e-115 419.1 294 70.4
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 9.3e-115 417.5 288 71.5
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 1.2e-114 417.2 297 69.0
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.6e-114 416.8 290 67.9
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.6e-114 416.8 290 67.9
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 6.0e-114 414.8 299 69.2
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 1.8e-113 413.3 347 67.4
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 6.7e-113 411.4 297 68.4
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 1.1e-112 410.6 293 68.3
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 3.3e-112 409.1 292 68.5
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 3.7e-111 405.6 295 68.5
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 6.3e-111 404.8 331 61.6
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.1e-110 404.1 341 60.4
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.4e-110 403.7 294 65.6
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 4.1e-110 402.1 290 67.9
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 5.3e-110 401.7 333 64.0
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 6.9e-110 401.4 293 67.6
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 1.2e-109 400.6 293 66.2
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 5.9e-109 398.3 286 68.2
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 5.9e-109 398.3 292 65.4
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 5.0e-108 395.2 293 65.9
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 3.2e-107 392.5 290 67.2
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 3.6e-106 389.0 293 64.8
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 7.9e-106 387.9 298 63.1
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 2.8e-103 379.4 296 62.5
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 2.8e-103 379.4 331 58.6
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.8e-102 376.7 293 64.5
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 1.8e-102 376.7 333 59.2
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 6.9e-102 374.8 257 67.7
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 1.7e-100 370.2 268 68.3
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 5.5e-99 365.2 298 61.7
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 7.2e-99 364.8 290 64.5
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 1.2e-98 364.0 295 58.3
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 2.4e-94 349.7 294 57.5
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 1.7e-92 343.6 290 57.9
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 2.5e-91 339.7 297 60.6
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 4.1e-86 322.4 286 55.6
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 1.6e-85 320.5 272 59.9
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 2.6e-85 319.7 310 58.1
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 2.2e-84 316.6 303 51.8
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 9.7e-80 301.2 246 60.2
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 3.5e-77 292.7 221 66.5
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 2.7e-74 283.1 269 53.5
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 8.8e-73 278.1 196 68.9
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 4.4e-72 275.8 290 46.2
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 8.3e-71 271.6 288 46.5
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 8.6e-68 261.5 342 40.9
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 1.9e-67 260.4 293 45.1
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 1.6e-66 257.3 288 43.1
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 6.1e-66 255.4 197 64.5
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 2.6e-64 250.0 259 52.5
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.7e-63 247.3 159 73.0
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 1.2e-61 241.1 258 46.5
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 8.6e-52 208.4 181 57.5
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 1.1e-46 191.4 222 46.8
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 6.0e-45 185.7 280 37.9
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 5.4e-38 162.5 84 89.3
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.3e-31 141.4 130 53.8
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 7.1e-30 135.6 73 84.9
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 2.3e-28 130.6 99 62.6
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 8.7e-28 128.6 76 78.9
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 2.5e-27 127.1 114 57.0
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 2.4e-25 120.6 94 60.6
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 2.4e-25 120.6 94 60.6
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 4.0e-25 119.8 68 79.4
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 5.3e-25 119.4 88 63.6
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 1.6e-21 107.8 87 62.1
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 2.7e-21 107.1 78 65.4
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 2.5e-19 100.5 93 49.5
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 4.3e-19 99.8 173 37.0
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 7.3e-19 99.0 62 72.6
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 6.2e-18 95.9 58 79.3
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 8.1e-18 95.5 81 56.8
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 6.7e-12 75.9 64 53.1
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 4.3e-11 73.2 46 69.6
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.8e-09 67.8 68 52.9
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 5.3e-09 66.2 47 68.1
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 1.2e-08 65.1 54 51.9
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.4e-06 58.2 92 34.8


User provided reference genes

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