Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A11G015250 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.0e-39 165.2 81 100.0
Gorai.007G015800 Gossypium raimondii HOM05D003086 ORTHO05D003347 4.2e-37 157.5 81 96.3
Gohir.D11G015350 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.6e-36 155.6 80 95.0
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 3.0e-22 108.2 83 71.1
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 5.0e-22 107.5 85 69.4
Gohir.D12G249000 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.5e-21 105.9 86 66.3
Gohir.A12G248300 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.3e-21 103.6 85 64.7
Gorai.008G267200 Gossypium raimondii HOM05D003086 ORTHO05D003347 7.3e-21 103.6 86 65.1
Gohir.A09G186001 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.1e-19 98.2 81 61.7
Gohir.D09G180500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.1e-19 98.2 81 61.7
Gorai.006G202500 Gossypium raimondii HOM05D003086 ORTHO05D003347 3.1e-19 98.2 81 61.7
Manes.01G039600 Manihot esculenta HOM05D003086 ORTHO05D003347 1.3e-14 82.8 81 59.3
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 5.0e-14 80.9 89 55.1
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 1.5e-13 79.3 89 53.9
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 1.9e-13 79.0 73 56.2
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 3.3e-13 78.2 89 53.9
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 9.5e-13 76.6 89 53.9
FAN10G1862 Fragaria x ananassa HOM05D037066 ORTHO05D003347 1.5e-10 69.3 92 46.7
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 1.5e-10 69.3 76 52.6
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 9.9e-10 66.6 58 60.3
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 9.9e-10 66.6 78 48.7
FAN03G2739 Fragaria x ananassa HOM05D002608 ORTHO05D013420 1.3e-09 66.2 92 45.7
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 1.7e-09 65.9 79 46.8
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 2.9e-09 65.1 63 50.8
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 3.7e-09 64.7 40 75.0
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 3.7e-09 64.7 64 50.0
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 4.9e-09 64.3 50 62.0
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 4.9e-09 64.3 73 46.6
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 6.4e-09 63.9 77 49.4
RcHm_v2.0_Chr1g0381731 Rosa chinensis HOM05D003086 ORTHO05D003347 6.4e-09 63.9 90 44.4
Lalb_Chr23g0271671 Lupinus albus HOM05D003086 ORTHO05D003347 8.3e-09 63.5 79 49.4
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 8.3e-09 63.5 84 47.6
Cc02_g01250 Coffea canephora HOM05D003086 ORTHO05D003347 1.4e-08 62.8 75 49.3
FAN10G1789 Fragaria x ananassa HOM05D037066 ORTHO05D003347 1.4e-08 62.8 92 44.6
SalBow3G3175 Salvia bowleyana HOM05D003086 ORTHO05D003347 3.2e-08 61.6 50 62.0
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 3.2e-08 61.6 45 66.7
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 3.2e-08 61.6 40 67.5
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 4.1e-08 61.2 84 46.4
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 5.4e-08 60.8 73 49.3
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 7.1e-08 60.5 75 46.7
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 9.2e-08 60.1 75 48.0
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 9.2e-08 60.1 75 48.0
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.2e-07 59.7 78 43.6
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 1.2e-07 59.7 74 45.9
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 1.2e-07 59.7 42 69.0
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 1.2e-07 59.7 76 46.1
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.6e-07 59.3 63 47.6
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 1.6e-07 59.3 46 58.7
Aqoxy7G00049 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 2.1e-07 58.9 40 62.5
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.1e-07 58.9 75 41.3
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 2.1e-07 58.9 68 48.5
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 2.1e-07 58.9 64 50.0
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 2.1e-07 58.9 61 54.1
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.1e-07 58.9 40 65.0
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 2.1e-07 58.9 41 68.3
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 2.7e-07 58.5 47 55.3
FAN01G2353 Fragaria x ananassa HOM05D037066 ORTHO05D003347 2.7e-07 58.5 92 42.4
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 2.7e-07 58.5 74 47.3
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 2.7e-07 58.5 75 48.0
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 2.7e-07 58.5 39 66.7
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 3.5e-07 58.2 73 46.6
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 3.5e-07 58.2 60 50.0
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 3.5e-07 58.2 40 65.0
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 3.5e-07 58.2 74 48.6
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 3.5e-07 58.2 40 65.0
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 4.6e-07 57.8 56 50.0
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 6.0e-07 57.4 47 55.3
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 6.0e-07 57.4 47 55.3
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 6.0e-07 57.4 47 55.3
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 6.0e-07 57.4 45 62.2
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 7.8e-07 57.0 47 53.2
CDE02G0840 Ceratophyllum demersum HOM05D003086 ORTHO05D003347 1.0e-06 56.6 43 60.5
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 1.0e-06 56.6 42 61.9
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.0e-06 56.6 78 42.3
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 1.0e-06 56.6 57 52.6
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 1.3e-06 56.2 47 53.2
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 1.3e-06 56.2 42 64.3
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 1.7e-06 55.8 48 58.3
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 1.7e-06 55.8 43 58.1
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 2.3e-06 55.5 63 44.4
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 2.3e-06 55.5 49 55.1
Sopen03g022700 Solanum pennellii HOM05D003086 ORTHO05D003347 2.3e-06 55.5 73 45.2
PGSC0003DMG400018543 Solanum tuberosum HOM05D003086 ORTHO05D003347 2.3e-06 55.5 73 45.2
CAN.G1415.17 Capsicum annuum HOM05D003086 ORTHO05D003347 3.0e-06 55.1 71 42.3
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 3.0e-06 55.1 47 53.2
Nitab4.5_0002780g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 3.0e-06 55.1 72 50.0
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 3.0e-06 55.1 47 55.3
TPR.G33614 Trifolium pratense HOM05D003086 ORTHO05D003347 3.0e-06 55.1 67 49.3
Ah.13g070480 Amaranthus hybridus HOM05D003086 ORTHO05D003347 3.9e-06 54.7 41 63.4
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 3.9e-06 54.7 47 55.3
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 3.9e-06 54.7 45 62.2
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 5.1e-06 54.3 64 43.8
unitig_85.g27205 Utricularia gibba HOM05D003086 ORTHO05D003347 6.6e-06 53.9 75 41.3
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 8.6e-06 53.5 42 61.9
Psat4g005000 Pisum sativum HOM05D003086 ORTHO05D003347 8.6e-06 53.5 43 60.5


User provided reference genes

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