Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 2.2e-230 802.0 417 100.0
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 4.3e-218 761.1 430 93.3
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 1.2e-215 753.1 430 92.3
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 1.4e-160 570.1 465 69.0
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 2.3e-150 536.2 421 71.5
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 4.6e-143 511.9 448 65.4
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 1.5e-125 453.8 478 56.7
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 1.8e-123 446.8 445 57.3
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 2.4e-123 446.4 485 54.6
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 2.4e-123 446.4 471 57.1
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 3.1e-123 446.0 475 56.2
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 5.8e-122 441.8 455 56.5
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 4.2e-120 435.6 398 60.6
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 4.2e-120 435.6 347 66.0
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 5.4e-120 435.3 389 59.6
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 4.6e-119 432.2 439 57.9
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 6.0e-119 431.8 455 55.8
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 1.0e-118 431.0 441 55.3
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 1.1e-117 427.6 350 65.7
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 2.5e-117 426.4 454 55.9
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 3.3e-117 426.0 424 57.5
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 3.3e-117 426.0 445 54.6
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 9.6e-117 424.5 447 56.2
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 1.3e-116 424.1 433 57.0
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 2.1e-116 423.3 462 54.1
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 3.1e-115 419.5 413 58.1
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 6.9e-115 418.3 399 58.4
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 9.0e-115 417.9 350 64.0
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 2.0e-114 416.8 428 56.3
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 2.0e-114 416.8 413 57.1
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 2.0e-114 416.8 454 53.3
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 5.8e-114 415.2 459 53.6
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 9.9e-114 414.5 430 56.3
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 3.8e-113 412.5 455 53.6
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 6.4e-113 411.8 414 57.0
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 6.4e-113 411.8 474 52.1
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 1.6e-111 407.1 327 63.6
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 1.6e-111 407.1 438 54.8
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 3.5e-111 406.0 477 51.2
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 6.0e-111 405.2 413 55.7
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 1.3e-110 404.1 442 52.3
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 1.3e-110 404.1 328 63.4
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 1.3e-110 404.1 456 53.5
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 3.9e-110 402.5 376 59.0
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 6.7e-110 401.7 428 54.4
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 8.7e-110 401.4 326 62.0
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 8.7e-110 401.4 421 54.4
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 1.1e-109 401.0 404 54.5
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 1.5e-109 400.6 413 54.2
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 4.3e-109 399.1 432 53.9
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 5.6e-109 398.7 404 54.2
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 1.3e-108 397.5 399 54.6
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 1.3e-108 397.5 416 55.3
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 3.7e-108 396.0 331 61.6
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 8.1e-108 394.8 413 54.7
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 1.4e-107 394.0 302 63.9
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 1.8e-107 393.7 413 54.5
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 5.3e-107 392.1 421 54.4
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 1.2e-106 391.0 460 49.8
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 2.6e-106 389.8 408 52.0
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 3.4e-106 389.4 417 53.0
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 7.6e-106 388.3 418 54.1
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 1.7e-105 387.1 412 52.4
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 8.4e-105 384.8 463 50.5
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 7.1e-104 381.7 440 50.9
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 2.7e-103 379.8 382 54.2
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 6.0e-103 378.6 391 56.3
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 6.0e-103 378.6 442 51.4
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 1.0e-102 377.9 355 57.7
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 2.3e-102 376.7 435 51.3
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 3.0e-102 376.3 445 49.7
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 5.1e-102 375.6 375 55.7
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 8.7e-102 374.8 475 50.3
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 1.5e-101 374.0 433 50.3
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 5.6e-101 372.1 367 54.5
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 6.2e-100 368.6 459 49.0
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 1.4e-99 367.5 458 48.3
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 3.1e-99 366.3 493 46.7
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 1.2e-98 364.4 395 54.4
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 3.8e-97 359.4 479 47.4
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 5.5e-96 355.5 395 53.2
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 1.3e-94 350.9 325 57.2
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.3e-94 350.9 403 50.4
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 3.0e-94 349.7 394 52.5
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 3.3e-93 346.3 440 49.3
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 7.4e-93 345.1 472 47.7
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 8.2e-92 341.7 352 53.4
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 1.4e-91 340.9 283 62.2
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 5.1e-86 322.4 419 47.3
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 1.5e-85 320.9 293 56.3
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 5.9e-82 308.9 375 46.4
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 2.9e-81 306.6 307 51.1
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 6.5e-81 305.4 256 61.3
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 2.8e-76 290.0 275 57.1
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 2.4e-75 287.0 331 51.1
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 7.9e-71 271.9 318 50.0
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 2.0e-66 257.3 304 49.0
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 3.8e-65 253.1 397 40.1
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 8.5e-65 251.9 309 47.6
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 1.1e-59 235.0 285 45.3
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 3.5e-58 229.9 383 40.2
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 7.7e-58 228.8 292 41.8
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 1.8e-54 217.6 402 35.6
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 5.9e-50 202.6 279 44.8
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 1.1e-48 198.4 172 59.9
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 1.5e-48 198.0 204 49.0
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 4.5e-42 176.4 220 48.6
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 5.9e-42 176.0 145 64.8
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 1.3e-41 174.9 168 56.0
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 4.7e-39 166.4 123 64.2
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 8.0e-39 165.6 232 41.4
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 1.8e-35 154.5 135 56.3
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 5.4e-35 152.9 238 36.1
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 2.0e-29 134.4 118 59.3
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 5.8e-29 132.9 130 57.7
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 9.8e-29 132.1 208 41.3
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 3.2e-27 127.1 122 54.1
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 2.0e-26 124.4 125 56.0
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 2.0e-26 124.4 125 56.0
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 3.5e-26 123.6 239 33.9
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 3.4e-21 107.1 90 60.0
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 5.4e-19 99.8 62 72.6
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 3.5e-18 97.1 64 70.3
PGSC0003DMG400000846 Solanum tuberosum HOM05D005646 ORTHO05D006828 1.8e-14 84.7 69 62.3
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 2.6e-13 80.9 52 71.2
MCO02G103 Micromonas commoda HOM05D005646 ORTHO05D006828 9.9e-13 79.0 97 41.2
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 3.5e-10 70.5 46 69.6
Glyma.12G039732 Glycine max HOM05D005646 ORTHO05D006828 4.6e-10 70.1 178 34.3
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 6.0e-10 69.7 50 64.0
CBR_g38389 Chara braunii HOM05D005646 ORTHO05D006828 2.3e-09 67.8 150 31.3
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 3.9e-09 67.0 120 36.7
COL.COLO4_26597 Corchorus olitorius HOM05D000001 ORTHO05D010004 2.8e-07 60.8 69 47.8
GSVIVG01038299001 Vitis vinifera HOM05D005646 ORTHO05D006828 9.0e-06 55.8 44 65.9


User provided reference genes

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