Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A10G156900 Gossypium hirsutum HOM05D007225 ORTHO05D009062 1.4e-99 366.3 184 100.0
Gorai.011G119000 Gossypium raimondii HOM05D007225 ORTHO05D009062 1.7e-89 332.8 175 96.6
Gohir.D10G108600 Gossypium hirsutum HOM05D007225 ORTHO05D009062 1.9e-88 329.3 175 95.4
Thecc.01G134800 Theobroma cacao HOM05D007225 ORTHO05D009062 1.9e-80 302.8 175 85.1
COL.COLO4_35773 Corchorus olitorius HOM05D007225 ORTHO05D009062 2.0e-74 282.7 175 81.7
Duzib187G1928 Durio zibethinus HOM05D007225 ORTHO05D009062 6.8e-67 257.7 175 77.1
Ciclev10002244m.g Citrus clementina HOM05D007225 ORTHO05D009062 2.1e-52 209.5 172 62.8
Atru.chr4.938 Acer truncatum HOM05D007225 ORTHO05D009062 9.0e-51 204.1 171 62.6
Dinv24394 Davidia involucrata HOM05D007225 ORTHO05D009062 1.5e-50 203.4 170 60.6
CiPaw.04G081200 Carya illinoinensis HOM05D007225 ORTHO05D009062 1.3e-49 200.3 170 60.6
FAN12G1161 Fragaria x ananassa HOM05D007225 ORTHO05D009062 6.4e-49 198.0 169 58.0
Hma1.2p1_0539F.1_g174530 Hydrangea macrophylla HOM05D007225 ORTHO05D009062 1.1e-48 197.2 171 57.3
FAN07G2982 Fragaria x ananassa HOM05D007225 ORTHO05D009062 3.2e-48 195.7 169 58.0
Eucgr.I00189 Eucalyptus grandis HOM05D007225 ORTHO05D009062 4.2e-48 195.3 172 58.1
FvH4_4g13030 Fragaria vesca HOM05D007225 ORTHO05D009062 9.3e-48 194.1 169 58.0
Prupe.4G273000 Prunus persica HOM05D007225 ORTHO05D009062 1.2e-47 193.7 168 60.1
Potri.005G064800 Populus trichocarpa HOM05D007225 ORTHO05D009062 3.5e-47 192.2 171 57.3
Potri.005G064951 Populus trichocarpa HOM05D007225 ORTHO05D009062 3.5e-47 192.2 171 57.3
CANSAT01G2273 Cannabis sativa HOM05D007225 ORTHO05D009062 4.6e-47 191.8 173 60.7
Cpa.g.sc42.174 Carica papaya HOM05D007225 ORTHO05D009062 4.6e-47 191.8 174 58.0
Sabra05G0053800 Salix brachista HOM05D007225 ORTHO05D009062 3.0e-46 189.1 171 55.6
RcHm_v2.0_Chr4g0412751 Rosa chinensis HOM05D007225 ORTHO05D009062 3.3e-45 185.7 169 55.0
Sc07g0001760 Simmondsia chinensis HOM05D007225 ORTHO05D009062 1.3e-44 183.7 171 56.1
CSS0045766 Camellia sinensis var. sinensis HOM05D007225 ORTHO05D009062 1.6e-44 183.3 170 56.5
Lj4g0008022 Lotus japonicus HOM05D007225 ORTHO05D009062 3.7e-44 182.2 170 54.1
TPR.G37342 Trifolium pratense HOM05D007225 ORTHO05D009062 1.1e-43 180.6 170 54.7
QL10p043051 Quercus lobata HOM05D007225 ORTHO05D009062 1.8e-43 179.9 216 50.0
Psat7g045080 Pisum sativum HOM05D007225 ORTHO05D009062 3.1e-43 179.1 171 55.6
Ca_17629_v3 Cicer arietinum L. HOM05D007225 ORTHO05D009062 6.9e-43 177.9 170 54.7
MBI06_g27455_MAGBIO Magnolia biondii HOM05D007225 ORTHO05D009062 6.9e-43 177.9 180 51.7
Manes.12G157300 Manihot esculenta HOM05D007225 ORTHO05D009062 6.9e-43 177.9 171 55.6
TAR625G0602 Trochodendron aralioides HOM05D007225 ORTHO05D009062 9.0e-43 177.6 176 52.8
Lsat_1_v5_gn_5_68521 Lactuca sativa HOM05D007225 ORTHO05D009062 1.2e-42 177.2 171 54.4
PGR119G1418 Punica granatum HOM05D007225 ORTHO05D009062 3.4e-42 175.6 164 59.1
AUR62017902 Chenopodium quinoa HOM05D007225 ORTHO05D009062 7.6e-42 174.5 182 52.2
AUR62043562 Chenopodium quinoa HOM05D007225 ORTHO05D009062 7.6e-42 174.5 182 52.2
Medtr8g093850 Medicago truncatula HOM05D007225 ORTHO05D009062 7.6e-42 174.5 173 52.6
TAR381G0670 Trochodendron aralioides HOM05D007225 ORTHO05D009062 7.6e-42 174.5 178 50.6
AUR62003589 Chenopodium quinoa HOM05D007225 ORTHO05D009062 1.3e-41 173.7 182 52.7
Hund04436 Selenicereus undatus HOM05D007225 ORTHO05D009062 1.7e-41 173.3 177 52.5
GSVIVG01022343001 Vitis vinifera HOM05D007225 ORTHO05D009062 1.7e-41 173.3 154 59.1
MD17G1201700 Malus domestica HOM05D007225 ORTHO05D009062 2.9e-41 172.6 171 54.4
vmacro12787 Vaccinium macrocarpon HOM05D007225 ORTHO05D009062 2.9e-41 172.6 171 54.4
Cc07_g18810 Coffea canephora HOM05D007225 ORTHO05D009062 1.4e-40 170.2 172 52.3
Nitab4.5_0000386g0080 Nicotiana tabacum HOM05D007225 ORTHO05D009062 1.9e-40 169.9 172 48.8
Nn5g28498 Nelumbo nucifera HOM05D007225 ORTHO05D009062 2.5e-40 169.5 178 50.6
Sed0013127 Sechium edule HOM05D007225 ORTHO05D009062 1.6e-39 166.8 174 50.6
CsaV3_2G019450 Cucumis sativus L. HOM05D007225 ORTHO05D009062 3.5e-39 165.6 172 50.6
Lalb_Chr13g0296631 Lupinus albus HOM05D007225 ORTHO05D009062 6.0e-39 164.9 172 50.0
PGSC0003DMG400012541 Solanum tuberosum HOM05D007225 ORTHO05D009062 1.0e-38 164.1 172 47.1
EL10Ac1g01390 Beta vulgaris HOM05D007225 ORTHO05D009062 3.0e-38 162.5 221 45.2
Migut.H00686 Erythranthe guttata HOM05D007225 ORTHO05D009062 3.9e-38 162.2 171 48.5
Solyc01g105570.4 Solanum lycopersicum HOM05D007225 ORTHO05D009062 5.1e-38 161.8 172 46.5
Sopen01g048040 Solanum pennellii HOM05D007225 ORTHO05D009062 6.7e-38 161.4 172 46.5
Rhsim10G0132500 Rhododendron simsii HOM05D007225 ORTHO05D009062 8.7e-38 161.0 216 45.8
Aqoxy6G00280 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 5.7e-37 158.3 171 46.8
PSO528G0250 Papaver somniferum HOM05D007225 ORTHO05D009062 1.3e-36 157.1 182 45.6
AT5G64010 Arabidopsis thaliana HOM05D007225 ORTHO05D009062 2.8e-36 156.0 154 54.5
Oeu058297.1 Olea europaea HOM05D007225 ORTHO05D009062 2.8e-36 156.0 171 47.4
PSO170G5625 Papaver somniferum HOM05D007225 ORTHO05D009062 3.7e-36 155.6 182 45.1
Aqoxy5G02304 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 6.2e-36 154.8 183 47.0
AL8G41270 Arabidopsis lyrata HOM05D007225 ORTHO05D009062 1.8e-35 153.3 154 53.9
A06p30630 Brassica napus HOM05D007225 ORTHO05D009062 1.8e-35 153.3 154 55.2
ClCG02G000390 Citrullus lanatus HOM05D007225 ORTHO05D009062 1.8e-35 153.3 172 47.7
Sp2g27080 Schrenkiella parvula HOM05D007225 ORTHO05D009062 2.4e-35 152.9 154 55.2
BraA06t26013Z Brassica rapa HOM05D007225 ORTHO05D009062 6.9e-35 151.4 154 54.5
C03p62330 Brassica napus HOM05D007225 ORTHO05D009062 9.0e-35 151.0 154 53.2
Ah.02g121670 Amaranthus hybridus HOM05D007225 ORTHO05D009062 1.2e-34 150.6 177 46.9
BcaC01g02654 Brassica carinata HOM05D007225 ORTHO05D009062 2.0e-34 149.8 154 52.6
BolC3t18495H Brassica oleracea HOM05D007225 ORTHO05D009062 2.0e-34 149.8 154 52.6
Carub.0008s2479 Capsella rubella HOM05D007225 ORTHO05D009062 2.6e-34 149.4 154 53.2
Thhalv10004850m.g Eutrema salsugineum HOM05D007225 ORTHO05D009062 3.4e-34 149.1 156 51.9
THA.LOC104818429 Tarenaya hassleriana HOM05D007225 ORTHO05D009062 5.8e-34 148.3 152 52.6
MSTRG.23466 Avicennia marina HOM05D007225 ORTHO05D009062 7.6e-34 147.9 168 45.8
Peaxi162Scf00172g00611 Petunia axillaris HOM05D007225 ORTHO05D009062 7.6e-34 147.9 153 48.4
DCAR_010250 Daucus carota HOM05D007225 ORTHO05D009062 1.0e-33 147.5 171 45.0
Aa31LG1G17910 Aethionema arabicum HOM05D007225 ORTHO05D009062 1.7e-33 146.7 172 48.3
ATR0709G077 Amborella trichopoda HOM05D007225 ORTHO05D009062 3.8e-33 145.6 176 46.6
CARHR277930 Cardamine hirsuta HOM05D007225 ORTHO05D002208 1.9e-32 143.3 154 51.9
VMungo0251G1761 Vigna mungo HOM05D007225 ORTHO05D009062 2.1e-31 139.8 173 47.4
DCAR_014328 Daucus carota HOM05D007225 ORTHO05D009062 3.9e-30 135.6 172 41.3
ECA233G3017 Erigeron canadensis HOM05D007225 ORTHO05D000131 5.1e-30 135.2 136 50.0
HPP92_025180 Vanilla planifolia HOM05D007225 ORTHO05D009062 5.1e-30 135.2 178 41.6
Glyma.05G192800 Glycine max HOM05D007225 ORTHO05D009062 8.7e-30 134.4 172 43.6
Phvul.002G273400 Phaseolus vulgaris HOM05D007225 ORTHO05D009062 4.3e-29 132.1 175 46.9
Haze_25275 Corylus avellana HOM05D007225 ORTHO05D009062 5.7e-29 131.7 104 59.6
RcHm_v2.0_Chr4g0412711 Rosa chinensis HOM05D007225 ORTHO05D009062 1.0e-25 120.9 108 54.6
AagrBONN_evm.TU.Sc2ySwM_368.986 Anthoceros agrestis HOM05D007225 ORTHO05D009062 2.9e-25 119.4 185 34.6
Mapoly0095s0053 Marchantia polymorpha HOM05D007225 ORTHO05D009062 2.9e-25 119.4 178 36.5
Pp3c8_18500 Physcomitrium patens HOM05D007225 ORTHO05D009062 1.4e-24 117.1 173 39.9
arahy.Tifrunner.gnm1.ann1.ST1FFJ Arachis hypogaea HOM05D007225 ORTHO05D009062 1.6e-23 113.6 103 54.4
Nn1g06303 Nelumbo nucifera HOM05D007225 ORTHO05D009062 1.0e-22 110.9 118 46.6
HanXRQChr12g0380581 Helianthus annuus HOM05D007225 ORTHO05D009062 6.7e-22 108.2 108 52.8
SMO146G0397 Selaginella moellendorffii HOM05D007225 ORTHO05D009062 7.4e-21 104.8 178 37.6
Glyma.08G000900 Glycine max HOM05D007225 ORTHO05D009062 3.7e-20 102.4 134 48.5
Carub.0003s2889 Capsella rubella HOM05D007225 ORTHO05D009062 6.3e-20 101.7 89 59.6
SGA_v2.0_scaffold20G09018 Striga asiatica HOM05D007225 ORTHO05D009062 1.4e-19 100.5 100 50.0
unitig_699.g19729 Utricularia gibba HOM05D007225 ORTHO05D009062 1.8e-19 100.1 172 37.2
Os04g0693250 Oryza sativa ssp. japonica HOM05D007225 ORTHO05D009062 4.1e-19 99.0 176 35.8
AagrBONN_evm.TU.Sc2ySwM_117.1984 Anthoceros agrestis HOM05D007225 ORTHO05D009062 9.1e-19 97.8 178 32.0
SHI11479 Sapria himalayana HOM05D000043 ORTHO05D002577 9.1e-19 97.8 96 46.9
Nitab4.5_0008206g0020 Nicotiana tabacum HOM05D007225 ORTHO05D009062 7.0e-11 71.6 66 53.0
MELO3C023228.2 Cucumis melo HOM05D007225 ORTHO05D009062 3.5e-10 69.3 87 44.8
Nitab4.5_0010123g0010 Nicotiana tabacum HOM05D007225 ORTHO05D009062 3.5e-10 69.3 66 51.5
SEGI_25786 Sequoiadendron giganteum HOM05D021798 ORTHO05D009062 4.5e-10 68.9 154 27.3
CBR_g23098 Chara braunii HOM05D007225 ORTHO05D009062 2.5e-08 63.2 227 23.3
SMO143G0295 Selaginella moellendorffii HOM05D021798 ORTHO05D018028 9.4e-08 61.2 157 26.8
arahy.Tifrunner.gnm1.ann1.LBHD5T Arachis hypogaea HOM05D007225 ORTHO05D009062 1.4e-06 57.4 41 63.4
SMO197G0114 Selaginella moellendorffii HOM05D021798 ORTHO05D018028 1.4e-06 57.4 144 28.5
Os04g0693200 Oryza sativa ssp. japonica HOM05D007225 ORTHO05D009062 6.7e-06 55.1 98 32.7


User provided reference genes

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