Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 4.4e-58 227.6 107 100.0
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.1e-56 223.0 107 99.1
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.1e-56 223.0 107 99.1
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 1.2e-52 209.5 105 93.3
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 3.6e-52 208.0 107 90.7
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 1.1e-51 206.5 107 89.7
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.4e-51 206.1 107 88.8
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 4.0e-51 204.5 107 87.9
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 6.8e-51 203.8 107 87.9
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 8.9e-51 203.4 105 89.5
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 4.7e-44 181.0 106 76.4
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 8.1e-44 180.3 103 78.6
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 1.1e-43 179.9 107 76.6
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 1.8e-43 179.1 107 74.8
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 2.4e-43 178.7 107 74.8
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 2.4e-43 178.7 103 77.7
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 3.1e-43 178.3 106 76.4
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 4.0e-43 177.9 107 75.7
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 5.2e-43 177.6 105 77.1
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 6.8e-43 177.2 107 74.8
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 6.8e-43 177.2 107 73.8
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 6.8e-43 177.2 107 74.8
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 1.5e-42 176.0 107 72.9
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 2.0e-42 175.6 105 74.3
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 2.0e-42 175.6 105 74.3
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 2.0e-42 175.6 105 74.3
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 2.0e-42 175.6 105 74.3
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 2.0e-42 175.6 105 74.3
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 2.0e-42 175.6 105 74.3
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 2.0e-42 175.6 105 74.3
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 2.0e-42 175.6 105 74.3
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 2.0e-42 175.6 105 74.3
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 2.0e-42 175.6 107 73.8
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 2.0e-42 175.6 107 73.8
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 2.6e-42 175.3 105 74.3
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 2.6e-42 175.3 105 74.3
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 2.6e-42 175.3 101 77.2
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 2.6e-42 175.3 105 74.3
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 3.4e-42 174.9 107 72.0
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 3.4e-42 174.9 107 72.9
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 4.4e-42 174.5 105 73.3
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 4.4e-42 174.5 107 73.8
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 5.8e-42 174.1 104 74.0
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 5.8e-42 174.1 105 73.3
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 5.8e-42 174.1 105 73.3
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 5.8e-42 174.1 105 73.3
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 5.8e-42 174.1 104 75.0
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 5.8e-42 174.1 107 73.8
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 7.6e-42 173.7 105 74.3
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 7.6e-42 173.7 105 73.3
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 7.6e-42 173.7 105 73.3
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 9.9e-42 173.3 101 76.2
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 1.3e-41 172.9 107 72.0
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 1.3e-41 172.9 101 76.2
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 1.3e-41 172.9 105 72.4
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 1.3e-41 172.9 105 72.4
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 1.3e-41 172.9 107 73.8
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 2.2e-41 172.2 107 72.9
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 2.2e-41 172.2 107 74.8
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 2.9e-41 171.8 107 72.9
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 3.8e-41 171.4 107 72.0
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 3.8e-41 171.4 101 75.2
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 3.8e-41 171.4 105 69.5
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 4.9e-41 171.0 107 72.9
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 4.9e-41 171.0 105 73.3
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 4.9e-41 171.0 107 72.9
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 6.4e-41 170.6 107 71.0
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 6.4e-41 170.6 107 70.1
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 6.4e-41 170.6 107 72.9
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 8.4e-41 170.2 106 72.6
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 8.4e-41 170.2 107 71.0
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 1.4e-40 169.5 107 71.0
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 1.4e-40 169.5 101 74.3
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 1.9e-40 169.1 107 71.0
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.9e-40 169.1 105 73.3
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 1.9e-40 169.1 107 71.0
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 1.9e-40 169.1 107 71.0
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 2.4e-40 168.7 105 71.4
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 3.2e-40 168.3 102 73.5
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 3.2e-40 168.3 102 73.5
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 3.2e-40 168.3 103 73.8
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 3.2e-40 168.3 106 71.7
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 4.1e-40 167.9 107 71.0
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 4.1e-40 167.9 107 71.0
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 4.1e-40 167.9 107 71.0
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 5.4e-40 167.5 103 73.8
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 5.4e-40 167.5 107 70.1
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 5.4e-40 167.5 104 70.2
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 7.1e-40 167.2 107 70.1
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 7.1e-40 167.2 104 70.2
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 9.2e-40 166.8 105 72.4
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 9.2e-40 166.8 107 70.1
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 9.2e-40 166.8 107 70.1
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 9.2e-40 166.8 105 70.5
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 1.2e-39 166.4 103 72.8
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.6e-39 166.0 107 69.2
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 1.6e-39 166.0 105 71.4
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.1e-39 165.6 107 70.1
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 2.1e-39 165.6 107 69.2
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 2.1e-39 165.6 105 70.5
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 2.1e-39 165.6 104 70.2
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 2.1e-39 165.6 104 70.2
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 3.5e-39 164.9 105 69.5
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 3.5e-39 164.9 106 68.9
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 6.0e-39 164.1 107 67.3
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 1.0e-38 163.3 104 69.2
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 1.3e-38 162.9 105 69.5
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 1.3e-38 162.9 101 69.3
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 1.7e-38 162.5 107 67.3
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 1.7e-38 162.5 105 69.5
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 1.7e-38 162.5 101 69.3
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 2.3e-38 162.2 104 69.2
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 2.3e-38 162.2 106 68.9
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 3.0e-38 161.8 107 68.2
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 5.1e-38 161.0 105 67.6
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 5.1e-38 161.0 104 67.3
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 5.1e-38 161.0 104 67.3
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 6.6e-38 160.6 104 68.3
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 8.6e-38 160.2 101 69.3
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 8.6e-38 160.2 107 68.2
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 1.5e-37 159.5 101 67.3
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 1.9e-37 159.1 103 67.0
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 3.3e-37 158.3 98 71.4
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 3.3e-37 158.3 107 66.4
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 7.3e-37 157.1 105 66.7
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 7.3e-37 157.1 107 67.3
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 1.6e-36 156.0 105 65.7
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 1.6e-36 156.0 109 65.1
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 2.1e-36 155.6 104 66.3
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 4.7e-36 154.5 107 63.6
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 8.1e-36 153.7 98 67.3
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 1.1e-35 153.3 107 62.6
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 1.8e-35 152.5 105 63.8
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 2.4e-35 152.1 101 68.3
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 5.2e-35 151.0 105 65.7
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 1.2e-34 149.8 108 63.9
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 1.5e-34 149.4 105 62.9
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 1.5e-34 149.4 104 65.4
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 1.5e-34 149.4 104 65.4
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 2.0e-34 149.1 97 69.1
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 4.4e-34 147.9 103 62.1
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 4.4e-34 147.9 105 61.9
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 2.2e-33 145.6 88 71.6
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 1.9e-32 142.5 89 69.7
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 1.9e-32 142.5 97 61.9
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 3.5e-31 138.3 169 44.4
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 1.9e-29 132.5 87 67.8
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.8e-27 125.9 99 56.6
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.4e-27 125.6 99 55.6
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 4.0e-27 124.8 94 58.5
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 5.8e-26 120.9 80 67.5
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 1.7e-25 119.4 95 52.6
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 6.4e-25 117.5 76 64.5
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 1.1e-24 116.7 100 51.0
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 5.4e-24 114.4 82 61.0
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 1.2e-23 113.2 72 63.9
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 1.6e-23 112.8 103 51.5
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 2.3e-22 109.0 69 71.0
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 5.6e-21 104.4 95 44.2
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 4.8e-20 101.3 63 73.0
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 6.2e-20 100.9 67 68.7
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 6.2e-20 100.9 63 73.0
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 2.6e-18 95.5 92 44.6
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 1.3e-17 93.2 59 71.2
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 3.8e-17 91.7 69 62.3
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 8.4e-17 90.5 59 71.2
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 4.2e-16 88.2 92 43.5
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 9.3e-16 87.0 69 56.5
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 2.7e-15 85.5 55 70.9
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 6.0e-15 84.3 63 61.9
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.3e-14 83.2 50 72.0
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 3.0e-14 82.0 55 69.1
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 6.7e-14 80.9 48 75.0
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 2.1e-12 75.9 45 71.1
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 4.8e-12 74.7 41 75.6
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.8e-11 72.8 44 68.2
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 5.3e-11 71.2 54 57.4


User provided reference genes

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