Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A09G172600 Gossypium hirsutum HOM05D005987 ORTHO05D007233 4.7e-120 434.5 213 100.0
Gohir.D09G168300 Gossypium hirsutum HOM05D005987 ORTHO05D007233 9.9e-110 400.2 264 77.7
Gorai.006G189900 Gossypium raimondii HOM05D005987 ORTHO05D007233 4.6e-107 391.3 297 70.0
Ciclev10021762m.g Citrus clementina HOM05D005987 ORTHO05D007233 1.2e-75 287.0 261 57.5
Dinv20627 Davidia involucrata HOM05D005987 ORTHO05D007233 2.7e-75 285.8 264 57.6
TAR629G2107 Trochodendron aralioides HOM05D005987 ORTHO05D007233 2.7e-75 285.8 264 58.3
GSVIVG01007695001 Vitis vinifera HOM05D005987 ORTHO05D007233 7.9e-75 284.3 254 57.1
Cfa019170 Carpinus fangiana HOM05D005987 ORTHO05D007233 1.9e-73 279.6 265 57.4
FvH4_5g05710 Fragaria vesca HOM05D005987 ORTHO05D007233 1.6e-72 276.6 263 57.0
MELO3C026282.2 Cucumis melo HOM05D005987 ORTHO05D007233 2.2e-72 276.2 234 58.5
FAN08G2261 Fragaria x ananassa HOM05D005987 ORTHO05D007233 1.1e-71 273.9 263 56.3
FAN13G1898 Fragaria x ananassa HOM05D005987 ORTHO05D007233 2.4e-71 272.7 262 56.1
Sed0001492 Sechium edule HOM05D005987 ORTHO05D007233 2.4e-71 272.7 257 55.6
Thecc.03G019200 Theobroma cacao HOM05D005987 ORTHO05D007233 4.1e-71 271.9 223 65.0
TWI39G0642 Tripterygium wilfordii HOM05D005987 ORTHO05D007233 4.1e-71 271.9 236 58.5
MD14G1176400 Malus domestica HOM05D005987 ORTHO05D007233 5.3e-71 271.6 259 55.6
MD06G1170600 Malus domestica HOM05D005987 ORTHO05D007233 9.0e-71 270.8 250 56.0
ClCG06G017140 Citrullus lanatus HOM05D005987 ORTHO05D007233 1.2e-70 270.4 234 56.8
CsaV3_1G001340 Cucumis sativus L. HOM05D005987 ORTHO05D007233 1.2e-70 270.4 234 57.3
Sc12g0005210 Simmondsia chinensis HOM05D005987 ORTHO05D007233 2.6e-70 269.2 250 56.4
TAR371G0908 Trochodendron aralioides HOM05D005987 ORTHO05D007233 2.6e-70 269.2 233 58.4
MBI16_g14601_MAGBIO Magnolia biondii HOM05D005987 ORTHO05D007233 3.4e-70 268.9 251 57.0
Ca_21942_v3 Cicer arietinum L. HOM05D005987 ORTHO05D007233 5.9e-70 268.1 224 59.8
Medtr4g105460 Medicago truncatula HOM05D005987 ORTHO05D007233 5.9e-70 268.1 224 58.9
TWI14G0473 Tripterygium wilfordii HOM05D005987 ORTHO05D007233 5.9e-70 268.1 236 58.5
Dinv38561 Davidia involucrata HOM05D005987 ORTHO05D007233 1.0e-69 267.3 264 54.5
arahy.Tifrunner.gnm1.ann1.9L10M3 Arachis hypogaea HOM05D005987 ORTHO05D007233 1.3e-69 266.9 270 52.6
Actinidia19114 Actinidia chinensis HOM05D005987 ORTHO05D007233 1.7e-69 266.5 268 53.4
RcHm_v2.0_Chr7g0193121 Rosa chinensis HOM05D005987 ORTHO05D007233 1.7e-69 266.5 262 55.0
Aqoxy3G02835 Aquilegia oxysepala HOM05D005987 ORTHO05D007233 2.9e-69 265.8 235 57.4
arahy.Tifrunner.gnm1.ann1.2X5BV9 Arachis hypogaea HOM05D005987 ORTHO05D007233 2.9e-69 265.8 225 59.1
FvH4_1g22320 Fragaria vesca HOM05D005987 ORTHO05D007233 2.9e-69 265.8 188 68.1
Potri.015G080100 Populus trichocarpa HOM05D005987 ORTHO05D007233 2.9e-69 265.8 267 53.9
BcaB04g19948 Brassica carinata HOM05D005987 ORTHO05D007233 1.1e-68 263.8 247 54.7
Lalb_Chr12g0201721 Lupinus albus HOM05D005987 ORTHO05D007233 1.1e-68 263.8 254 53.5
Aqoxy1G03751 Aquilegia oxysepala HOM05D005987 ORTHO05D007233 1.4e-68 263.5 235 57.0
arahy.Tifrunner.gnm1.ann1.T968NY Arachis hypogaea HOM05D005987 ORTHO05D007233 1.4e-68 263.5 270 51.5
FAN18G2319 Fragaria x ananassa HOM05D005987 ORTHO05D007233 1.4e-68 263.5 296 50.3
TPR.G37573 Trifolium pratense HOM05D005987 ORTHO05D007233 1.4e-68 263.5 245 55.5
BcaC04g23367 Brassica carinata HOM05D005987 ORTHO05D007233 1.9e-68 263.1 239 56.1
Thhalv10004783m.g Eutrema salsugineum HOM05D005987 ORTHO05D007233 1.9e-68 263.1 236 56.8
VMungo1215G1113 Vigna mungo HOM05D005987 ORTHO05D007233 4.2e-68 261.9 222 60.4
AT5G63060 Arabidopsis thaliana HOM05D005987 ORTHO05D007233 5.5e-68 261.5 247 54.3
THA.LOC104798969 Tarenaya hassleriana HOM05D005987 ORTHO05D007233 5.5e-68 261.5 239 57.3
Carub.0008s2377 Capsella rubella HOM05D005987 ORTHO05D007233 7.2e-68 261.2 247 54.3
CARHR276860 Cardamine hirsuta HOM05D005987 ORTHO05D007233 9.4e-68 260.8 236 55.9
Oeu024705.1 Olea europaea HOM05D005987 ORTHO05D007233 9.4e-68 260.8 234 55.1
Psat4g058800 Pisum sativum HOM05D005987 ORTHO05D007233 9.4e-68 260.8 222 58.6
Sp2g26190 Schrenkiella parvula HOM05D005987 ORTHO05D007233 9.4e-68 260.8 239 55.2
PGSC0003DMG400018166 Solanum tuberosum HOM05D005987 ORTHO05D007233 1.6e-67 260.0 249 53.8
Nitab4.5_0003229g0030 Nicotiana tabacum HOM05D005987 ORTHO05D007233 2.1e-67 259.6 259 52.5
CiPaw.12G028700 Carya illinoinensis HOM05D005987 ORTHO05D007233 2.7e-67 259.2 217 60.4
HanXRQChr03g0068941 Helianthus annuus HOM05D005987 ORTHO05D007233 2.7e-67 259.2 252 53.6
C09p09060 Brassica napus HOM05D005987 ORTHO05D007233 1.0e-66 257.3 230 57.8
BolC9t53819H Brassica oleracea HOM05D005987 ORTHO05D007233 1.0e-66 257.3 230 57.8
Eucgr.B00245 Eucalyptus grandis HOM05D005987 ORTHO05D007233 1.0e-66 257.3 250 56.0
Phvul.003G202500 Phaseolus vulgaris HOM05D002782 ORTHO05D007233 1.0e-66 257.3 219 60.3
A09p08010 Brassica napus HOM05D005987 ORTHO05D007233 1.4e-66 256.9 253 52.6
BraA09t36453Z Brassica rapa HOM05D005987 ORTHO05D007233 1.8e-66 256.5 230 57.4
Lj4g0021830 Lotus japonicus HOM05D005987 ORTHO05D007233 2.3e-66 256.1 234 56.8
Sed0002182 Sechium edule HOM05D005987 ORTHO05D007233 2.3e-66 256.1 233 54.9
Solyc03g112640.3 Solanum lycopersicum HOM05D005987 ORTHO05D007233 2.3e-66 256.1 254 52.0
Peaxi162Scf00089g01737 Petunia axillaris HOM05D005987 ORTHO05D007233 3.0e-66 255.8 258 54.3
PGR083G1581 Punica granatum HOM05D005987 ORTHO05D007233 3.0e-66 255.8 265 52.8
TPR.G37495 Trifolium pratense HOM05D005987 ORTHO05D007233 8.8e-66 254.2 223 57.8
Lsat_1_v5_gn_7_54241 Lactuca sativa HOM05D005987 ORTHO05D007233 1.5e-65 253.4 259 51.0
FAN04G3269 Fragaria x ananassa HOM05D005987 ORTHO05D007233 2.5e-65 252.7 231 56.3
Oeu016421.1 Olea europaea HOM05D005987 ORTHO05D007233 2.5e-65 252.7 258 52.7
THA.LOC104821480 Tarenaya hassleriana HOM05D005987 ORTHO05D007233 4.3e-65 251.9 247 53.4
CSS0034112 Camellia sinensis var. sinensis HOM05D005987 ORTHO05D007233 5.7e-65 251.5 265 51.7
Glyma.05G039500 Glycine max HOM05D005987 ORTHO05D007233 5.7e-65 251.5 219 58.0
Glyma.17G087400 Glycine max HOM05D005987 ORTHO05D007233 5.7e-65 251.5 222 57.2
Lj5A126G85 Lonicera japonica HOM05D005987 ORTHO05D007233 7.4e-65 251.1 216 59.3
Sopen03g031720 Solanum pennellii HOM05D005987 ORTHO05D007233 7.4e-65 251.1 254 51.6
Sabra15G0104300 Salix brachista HOM05D005987 ORTHO05D007233 9.7e-65 250.8 310 46.8
vmacro16628 Vaccinium macrocarpon HOM05D005987 ORTHO05D007233 9.7e-65 250.8 251 53.0
CAN.G1166.26 Capsicum annuum HOM05D005987 ORTHO05D007233 2.2e-64 249.6 251 52.2
Cc04_g12360 Coffea canephora HOM05D005987 ORTHO05D007233 2.2e-64 249.6 230 54.8
ECA240G0310 Erigeron canadensis HOM05D000306 ORTHO05D007657 2.2e-64 249.6 236 54.2
Nn4g22674 Nelumbo nucifera HOM05D005987 ORTHO05D007233 2.2e-64 249.6 235 55.7
Medtr4g105450 Medicago truncatula HOM05D005987 ORTHO05D007233 2.8e-64 249.2 238 54.6
PSO832G1443 Papaver somniferum HOM05D005987 ORTHO05D007233 4.8e-64 248.4 254 50.4
CDE06G0769 Ceratophyllum demersum HOM05D005987 ORTHO05D007233 6.3e-64 248.1 218 59.2
AUR62028761 Chenopodium quinoa HOM05D005987 ORTHO05D007233 6.3e-64 248.1 234 54.7
MSTRG.9684 Avicennia marina HOM05D005987 ORTHO05D007233 8.2e-64 247.7 234 53.0
Zm00001eb379250 Zea mays HOM05D005987 ORTHO05D007233 8.2e-64 247.7 254 51.2
Psat4g058760 Pisum sativum HOM05D005987 ORTHO05D007233 1.4e-63 246.9 238 55.0
SGA_v2.0_scaffold116G32224 Striga asiatica HOM05D005987 ORTHO05D007233 1.4e-63 246.9 261 50.2
SGA_v2.0_scaffold90G27882 Striga asiatica HOM05D005987 ORTHO05D007233 1.4e-63 246.9 235 52.8
Ah.11g051440 Amaranthus hybridus HOM05D005987 ORTHO05D007233 5.3e-63 245.0 239 53.1
EL10Ac5g10704 Beta vulgaris HOM05D005987 ORTHO05D007233 9.1e-63 244.2 256 52.0
SalBow5G4086 Salvia bowleyana HOM05D005987 ORTHO05D007233 1.2e-62 243.8 165 66.1
MSTRG.4360 Avicennia marina HOM05D005987 ORTHO05D007233 1.5e-62 243.4 256 50.0
Hund09453 Selenicereus undatus HOM05D005987 ORTHO05D007233 2.0e-62 243.0 287 50.2
Aa31LG11G610 Aethionema arabicum HOM05D005987 ORTHO05D007233 2.6e-62 242.7 238 52.5
Migut.D01982 Erythranthe guttata HOM05D005987 ORTHO05D007233 3.4e-62 242.3 257 46.7
Ah.02g110630 Amaranthus hybridus HOM05D005987 ORTHO05D007233 7.7e-62 241.1 239 53.1
Rhsim12G0166400 Rhododendron simsii HOM05D005987 ORTHO05D007233 1.3e-61 240.4 251 51.0
Os02g0321500 Oryza sativa ssp. japonica HOM05D005987 ORTHO05D007233 2.9e-61 239.2 222 54.5
Atru.chr9.2528 Acer truncatum HOM05D005987 ORTHO05D007233 5.0e-61 238.4 225 54.2
AL8G40080 Arabidopsis lyrata HOM05D005987 ORTHO05D007233 1.4e-60 236.9 220 55.9
SalBow5G4110 Salvia bowleyana HOM05D005987 ORTHO05D007233 3.2e-60 235.7 232 50.0
HPP92_000317 Vanilla planifolia HOM05D005987 ORTHO05D007233 4.2e-60 235.3 219 54.8
QL10p008901 Quercus lobata HOM05D005987 ORTHO05D007233 9.4e-60 234.2 240 51.7
Nitab4.5_0001207g0020 Nicotiana tabacum HOM05D001815 ORTHO05D007233 1.8e-58 229.9 233 52.4
DCAR_016038 Daucus carota HOM05D005987 ORTHO05D007233 5.7e-57 224.9 226 53.1
unitig_0.g1431 Utricularia gibba HOM05D005987 ORTHO05D007233 4.8e-56 221.9 233 47.6
Manes.14G063300 Manihot esculenta HOM05D005987 ORTHO05D007233 3.1e-55 219.2 262 48.5
SEGI_07831 Sequoiadendron giganteum HOM05D005987 ORTHO05D007233 3.5e-54 215.7 217 48.4
SEGI_41325 Sequoiadendron giganteum HOM05D005987 ORTHO05D007233 3.5e-54 215.7 217 48.4
AUR62008180 Chenopodium quinoa HOM05D005987 ORTHO05D007233 2.2e-53 213.0 214 52.3
PSO782G2758 Papaver somniferum HOM05D005987 ORTHO05D007233 3.3e-49 199.1 191 52.4
ATR1152G043 Amborella trichopoda HOM05D005987 ORTHO05D007233 2.2e-48 196.4 210 49.0
AagrBONN_evm.TU.Sc2ySwM_117.1082 Anthoceros agrestis HOM05D005987 ORTHO05D007233 1.8e-47 193.4 239 41.8
Atru.chr9.2531 Acer truncatum HOM05D005987 ORTHO05D007233 3.1e-47 192.6 137 66.4
SMO270G0062 Selaginella moellendorffii HOM05D005987 ORTHO05D007233 7.0e-47 191.4 220 43.2
Pp3c16_21460 Physcomitrium patens HOM05D005987 ORTHO05D007233 2.5e-44 183.0 224 40.2
Haze_07547 Corylus avellana HOM05D005987 ORTHO05D007233 1.8e-42 176.8 170 57.1
CBR_g39624 Chara braunii HOM05D005987 ORTHO05D007233 1.2e-41 174.1 212 41.0
Mapoly0098s0038 Marchantia polymorpha HOM05D005987 ORTHO05D007233 1.8e-39 166.8 215 41.4
COL.COLO4_30106 Corchorus olitorius HOM05D005987 ORTHO05D007233 1.2e-30 137.5 98 74.5
Prupe.5G170200 Prunus persica HOM05D005987 ORTHO05D007233 1.0e-26 124.4 213 39.4
Zm00001eb379230 Zea mays HOM05D005987 ORTHO05D007233 9.8e-25 117.9 66 80.3
HanXRQChr13g0389901 Helianthus annuus HOM05D005987 ORTHO05D007233 2.9e-24 116.3 65 81.5
Nitab4.5_0001207g0040 Nicotiana tabacum HOM05D005987 ORTHO05D007233 4.9e-24 115.5 65 76.9
Lj7C282T17 Lonicera japonica HOM05D005987 ORTHO05D007233 4.1e-23 112.5 79 60.8
PRCOL_00004470 Prasinoderma coloniale HOM05D005987 ORTHO05D007233 4.4e-17 92.4 212 30.2
MCO02G152 Micromonas commoda HOM05D005987 ORTHO05D007233 9.8e-17 91.3 185 29.2
Cre10.g448051 Chlamydomonas reinhardtii HOM05D005987 ORTHO05D007233 8.3e-16 88.2 167 29.9
SGA_v2.0_scaffold116G32226 Striga asiatica HOM05D005987 ORTHO05D007233 1.2e-14 84.3 281 28.1
COL.COLO4_30105 Corchorus olitorius HOM05D005987 ORTHO05D007233 3.0e-13 79.7 98 44.9
Potri.012G088350 Populus trichocarpa HOM05D005987 ORTHO05D007233 2.6e-09 66.6 96 40.6
SalBow3G1272 Salvia bowleyana HOM05D001180 ORTHO05D001055 3.7e-08 62.8 188 26.6
arahy.Tifrunner.gnm1.ann1.FTVA6C Arachis hypogaea HOM05D001180 ORTHO05D001055 2.4e-07 60.1 131 27.5
AUR62032481 Chenopodium quinoa HOM05D005987 ORTHO05D007233 2.4e-07 60.1 91 40.7
Medtr3g074050 Medicago truncatula HOM05D001180 ORTHO05D001055 2.1e-06 57.0 163 27.0
Lj1g0027366 Lotus japonicus HOM05D001180 ORTHO05D001055 3.5e-06 56.2 160 26.9


User provided reference genes

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