Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A09G103600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.2e-32 142.5 67 100.0
Gohir.1Z050480 Gossypium hirsutum HOM05D007549 ORTHO05D009532 4.4e-32 140.6 67 98.5
Gohir.D02G088100 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.2e-31 138.3 67 97.0
Gohir.D12G108000 Gossypium hirsutum HOM05D007549 ORTHO05D009532 3.8e-31 137.5 67 97.0
Gohir.A10G214800 Gossypium hirsutum HOM05D007549 ORTHO05D009532 3.2e-30 134.4 67 94.0
CARHR282150 Cardamine hirsuta HOM05D007549 ORTHO05D009532 1.6e-29 132.1 67 91.0
RcHm_v2.0_CPg0502021 Rosa chinensis HOM05D007549 ORTHO05D009532 1.6e-29 132.1 67 92.5
A06p23130 Brassica napus HOM05D007549 ORTHO05D009532 2.1e-29 131.7 67 91.0
BNapus_Darmor_BZH_scaffold_253p00240 Brassica napus HOM05D007549 ORTHO05D009532 2.1e-29 131.7 67 91.0
BNapus_Darmor_BZH_scaffold_287p00180 Brassica napus HOM05D007549 ORTHO05D009532 2.1e-29 131.7 67 91.0
C02p43570 Brassica napus HOM05D007549 ORTHO05D009532 2.1e-29 131.7 67 91.0
C06p22970 Brassica napus HOM05D007549 ORTHO05D009532 2.1e-29 131.7 67 91.0
C06p23020 Brassica napus HOM05D007549 ORTHO05D009532 2.1e-29 131.7 67 91.0
BolC8t52432H Brassica oleracea HOM05D007549 ORTHO05D009532 2.1e-29 131.7 67 91.0
BolSC29t60475H Brassica oleracea HOM05D007549 ORTHO05D009532 2.1e-29 131.7 67 91.0
BolSC29t60596H Brassica oleracea HOM05D007549 ORTHO05D009532 2.1e-29 131.7 67 91.0
BolSC35t60656H Brassica oleracea HOM05D007549 ORTHO05D009532 2.1e-29 131.7 67 91.0
BolSC35t60741H Brassica oleracea HOM05D007549 ORTHO05D009532 2.1e-29 131.7 67 91.0
BolSC47t61088H Brassica oleracea HOM05D007549 ORTHO05D009532 2.1e-29 131.7 67 91.0
BraA06t25416Z Brassica rapa HOM05D007549 ORTHO05D009532 2.1e-29 131.7 67 91.0
BraSC25t45857Z Brassica rapa HOM05D007549 ORTHO05D009532 2.1e-29 131.7 67 91.0
Gohir.A06G124600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 2.7e-29 131.3 67 92.5
Nn021s41532 Nelumbo nucifera HOM05D007549 ORTHO05D009532 2.7e-29 131.3 67 89.6
Sed0011532 Sechium edule HOM05D007549 ORTHO05D009532 3.5e-29 131.0 67 91.0
Sed0017373 Sechium edule HOM05D007549 ORTHO05D009532 3.5e-29 131.0 67 91.0
Sed0021629 Sechium edule HOM05D007549 ORTHO05D009532 3.5e-29 131.0 67 91.0
Sed0025178 Sechium edule HOM05D007549 ORTHO05D009532 3.5e-29 131.0 67 91.0
ATCG00640 Arabidopsis thaliana HOM05D007549 ORTHO05D009532 4.6e-29 130.6 67 89.6
Ciclev10033989m.g Citrus clementina HOM05D007549 ORTHO05D009532 6.0e-29 130.2 67 88.1
HanXRQChr00c0314g0573541 Helianthus annuus HOM05D007549 ORTHO05D009532 7.8e-29 129.8 67 86.6
HanXRQChr01g0020311 Helianthus annuus HOM05D007549 ORTHO05D009532 7.8e-29 129.8 67 86.6
HanXRQChr02g0041601 Helianthus annuus HOM05D007549 ORTHO05D009532 7.8e-29 129.8 67 86.6
HanXRQChr02g0044861 Helianthus annuus HOM05D007549 ORTHO05D009532 7.8e-29 129.8 67 86.6
HanXRQChr10g0284281 Helianthus annuus HOM05D007549 ORTHO05D009532 7.8e-29 129.8 67 86.6
HanXRQChr10g0289301 Helianthus annuus HOM05D007549 ORTHO05D009532 7.8e-29 129.8 67 86.6
HanXRQChr10g0318161 Helianthus annuus HOM05D007549 ORTHO05D009532 7.8e-29 129.8 67 86.6
HanXRQChr11g0326871 Helianthus annuus HOM05D007549 ORTHO05D009532 7.8e-29 129.8 67 86.6
HanXRQChr11g0345191 Helianthus annuus HOM05D007549 ORTHO05D009532 7.8e-29 129.8 67 86.6
HanXRQCPg0580081 Helianthus annuus HOM05D007549 ORTHO05D009532 7.8e-29 129.8 67 86.6
AL2G21610 Arabidopsis lyrata HOM05D007549 ORTHO05D009532 1.0e-28 129.4 67 89.6
BolSC49t61174H Brassica oleracea HOM05D007549 ORTHO05D009532 1.0e-28 129.4 67 89.6
MELO3C001514.2 Cucumis melo HOM05D007549 ORTHO05D009532 1.0e-28 129.4 67 89.6
PGR111G0018 Punica granatum HOM05D007549 ORTHO05D009532 1.0e-28 129.4 69 89.9
BolC9t53163H Brassica oleracea HOM05D007549 ORTHO05D009532 1.3e-28 129.0 67 88.1
DCAR_032505 Daucus carota HOM05D007549 ORTHO05D009532 1.3e-28 129.0 67 85.1
CsaV3_7G024610 Cucumis sativus L. HOM05D007549 ORTHO05D009532 2.3e-28 128.3 67 88.1
HanXRQChr04g0095131 Helianthus annuus HOM05D007549 ORTHO05D009532 2.3e-28 128.3 67 85.1
BolC2t08912H Brassica oleracea HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 89.6
BolC6t36197H Brassica oleracea HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 88.1
Solyc09g064410.1 Solanum lycopersicum HOM05D007549 ORTHO05D009532 3.0e-28 127.9 67 88.1
EL10As12g24029 Beta vulgaris HOM05D007549 ORTHO05D009532 5.1e-28 127.1 67 86.6
EL10As15g24130 Beta vulgaris HOM05D007549 ORTHO05D009532 5.1e-28 127.1 67 86.6
CAN.G1148.11 Capsicum annuum HOM05D007549 ORTHO05D009532 5.1e-28 127.1 67 88.1
CAN.G1314.5 Capsicum annuum HOM05D007549 ORTHO05D009532 5.1e-28 127.1 67 88.1
CAN.G2018.15 Capsicum annuum HOM05D007549 ORTHO05D009532 5.1e-28 127.1 67 88.1
CAN.G2018.7 Capsicum annuum HOM05D007549 ORTHO05D009532 5.1e-28 127.1 67 88.1
CAN.G438.85 Capsicum annuum HOM05D007549 ORTHO05D009532 5.1e-28 127.1 67 88.1
BraSC138t45567Z Brassica rapa HOM05D007549 ORTHO05D009532 6.6e-28 126.7 65 89.2
PSO548G0033 Papaver somniferum HOM05D007549 ORTHO05D009532 1.5e-27 125.6 67 85.1
CAN.G3365.3 Capsicum annuum HOM05D007549 ORTHO05D009532 1.9e-27 125.2 67 85.1
BraSC58t46491Z Brassica rapa HOM05D007549 ORTHO05D009532 3.3e-27 124.4 62 91.9
Potri.003G067400 Populus trichocarpa HOM05D007549 ORTHO05D009532 7.3e-27 123.2 67 83.6
CAN.G452.5 Capsicum annuum HOM05D007549 ORTHO05D009532 9.6e-27 122.9 67 86.6
HanXRQChr02g0052591 Helianthus annuus HOM05D007549 ORTHO05D009532 1.3e-26 122.5 67 82.1
HanXRQChr00c0339g0573821 Helianthus annuus HOM05D007549 ORTHO05D009532 2.1e-26 121.7 62 85.5
HanXRQChr10g0283591 Helianthus annuus HOM05D007549 ORTHO05D009532 2.1e-26 121.7 62 85.5
ClCG11G009530 Citrullus lanatus HOM05D007549 ORTHO05D009532 2.8e-26 121.3 62 88.7
Oeu062831.1 Olea europaea HOM05D007549 ORTHO05D009532 6.9e-25 116.7 67 82.1
Lalb_Chr07g0192081 Lupinus albus HOM05D007549 ORTHO05D009532 5.8e-24 113.6 68 79.4
Lalb_Chr20g0115511 Lupinus albus HOM05D007549 ORTHO05D009532 5.8e-24 113.6 68 79.4
Gohir.D11G296624 Gossypium hirsutum HOM05D007549 ORTHO05D009532 9.9e-24 112.8 67 82.1
Gorai.007G320000 Gossypium raimondii HOM05D007549 ORTHO05D009532 9.9e-24 112.8 67 82.1
Glyma.12G232300 Glycine max HOM05D007549 ORTHO05D009532 1.7e-23 112.1 67 77.6
Glyma.15G239000 Glycine max HOM05D007549 ORTHO05D009532 6.4e-23 110.2 67 74.6
Lj1g0000802 Lotus japonicus HOM05D007549 ORTHO05D009532 6.4e-23 110.2 67 76.1
LjContig00318g0016693 Lotus japonicus HOM05D007549 ORTHO05D009532 6.4e-23 110.2 67 76.1
Lj5g0014355 Lotus japonicus HOM05D007549 ORTHO05D009532 8.4e-23 109.8 67 76.1
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 1.9e-22 108.6 61 77.0
HanXRQChr11g0331601 Helianthus annuus HOM05D007549 ORTHO05D009532 7.1e-22 106.7 66 74.2
Medtr8g045210 Medicago truncatula HOM05D007549 ORTHO05D009532 7.1e-22 106.7 61 75.4
BolC4t25867H Brassica oleracea HOM05D007549 ORTHO05D009532 7.9e-21 103.2 56 82.1
ClCG02G007770 Citrullus lanatus HOM05D007549 ORTHO05D009532 1.0e-20 102.8 67 77.6
Gohir.D07G173850 Gossypium hirsutum HOM05D007549 ORTHO05D009532 3.9e-20 100.9 67 73.1
Lalb_Chr23g0274441 Lupinus albus HOM05D007549 ORTHO05D009532 3.9e-20 100.9 67 71.6
HanXRQChr16g0529021 Helianthus annuus HOM05D007549 ORTHO05D009532 1.1e-19 99.4 47 95.7
Gorai.001G194300 Gossypium raimondii HOM05D007549 ORTHO05D009532 1.9e-19 98.6 67 71.6
Gorai.010G129600 Gossypium raimondii HOM05D007549 ORTHO05D009532 9.6e-19 96.3 67 73.1
arahy.Tifrunner.gnm1.ann1.JD40MT Arachis hypogaea HOM05D007549 ORTHO05D009532 1.3e-18 95.9 59 72.9
Gohir.D11G284350 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.8e-17 92.0 67 73.1
HanXRQChr00c0557g0575791 Helianthus annuus HOM05D007549 ORTHO05D009532 3.1e-17 91.3 51 80.4
Gohir.D06G113650 Gossypium hirsutum HOM05D007549 ORTHO05D009532 9.0e-17 89.7 67 70.1
Gohir.A07G175856 Gossypium hirsutum HOM05D007549 ORTHO05D009532 9.9e-16 86.3 67 68.7
TPR.G34467 Trifolium pratense HOM05D007549 ORTHO05D009532 2.9e-15 84.7 50 76.0
Lalb_Chr23g0274351 Lupinus albus HOM05D007549 ORTHO05D009532 5.5e-14 80.5 51 76.5
Hund31442 Selenicereus undatus HOM05D007549 ORTHO05D009532 4.6e-13 77.4 53 69.8
MCO12G297 Micromonas commoda HOM05D007549 ORTHO05D009532 1.0e-12 76.3 66 59.1
PRCOL_00001223 Prasinoderma coloniale HOM05D007549 ORTHO05D009532 9.6e-11 69.7 66 57.6
BraSC58t46430Z Brassica rapa HOM05D007549 ORTHO05D009532 6.2e-10 67.0 37 86.5
Nitab4.5_0011882g0050 Nicotiana tabacum HOM05D008505 ORTHO05D010735 3.1e-09 64.7 38 81.6
Cre10.g462950 Chlamydomonas reinhardtii HOM05D007549 ORTHO05D009532 4.5e-08 60.8 65 47.7


User provided reference genes

Program Settings