Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 1.4e-140 503.1 272 100.0
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 3.0e-135 485.3 272 97.1
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 4.3e-134 481.5 272 96.3
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 2.5e-102 375.9 230 87.4
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 2.7e-96 355.9 228 86.0
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 2.9e-90 335.9 219 84.0
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 6.3e-85 318.2 230 74.3
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 2.2e-82 309.7 230 72.2
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 1.5e-81 307.0 230 67.8
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 7.2e-81 304.7 224 74.1
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 9.4e-81 304.3 227 74.0
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.2e-80 303.9 225 73.8
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.2e-80 303.9 225 71.6
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.0e-79 300.8 225 69.8
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 1.0e-79 300.8 225 72.0
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 1.0e-79 300.8 231 70.6
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 1.4e-79 300.4 225 74.2
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 3.0e-79 299.3 230 70.9
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 1.2e-78 297.4 226 72.1
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 3.4e-78 295.8 226 71.7
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 7.5e-78 294.7 225 70.7
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 1.3e-77 293.9 231 71.0
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 1.3e-77 293.9 231 72.7
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 1.7e-77 293.5 225 64.0
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 3.7e-77 292.4 220 70.5
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 3.7e-77 292.4 230 69.6
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 4.8e-77 292.0 225 69.8
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 8.3e-77 291.2 234 69.7
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 8.3e-77 291.2 216 65.3
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 1.4e-76 290.4 225 70.2
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 1.8e-76 290.0 221 63.8
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 1.8e-76 290.0 225 70.2
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 2.4e-76 289.7 228 63.2
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 3.1e-76 289.3 226 64.2
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 3.1e-76 289.3 231 62.8
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 3.1e-76 289.3 226 64.2
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 3.1e-76 289.3 221 63.3
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 1.2e-75 287.3 225 63.6
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.6e-75 287.0 253 61.7
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 2.0e-75 286.6 226 71.2
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 2.0e-75 286.6 225 70.2
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 3.5e-75 285.8 225 63.1
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 5.9e-75 285.0 226 70.8
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 7.7e-75 284.6 227 64.3
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.0e-74 284.3 225 71.1
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 1.3e-74 283.9 225 71.1
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.7e-74 283.5 221 67.9
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.7e-74 283.5 226 68.6
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 1.7e-74 283.5 216 64.8
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 2.2e-74 283.1 226 68.1
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 3.8e-74 282.3 225 69.3
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 5.0e-74 282.0 222 68.5
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 5.0e-74 282.0 230 66.5
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 6.5e-74 281.6 226 66.4
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 6.5e-74 281.6 239 60.7
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 1.1e-73 280.8 224 70.1
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 4.2e-73 278.9 245 60.8
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 5.5e-73 278.5 224 61.6
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 5.5e-73 278.5 221 67.4
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 5.5e-73 278.5 223 63.7
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 7.2e-73 278.1 222 62.6
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 7.2e-73 278.1 222 63.1
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 7.2e-73 278.1 172 76.2
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 9.4e-73 277.7 223 66.8
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.6e-72 276.9 223 67.7
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 1.6e-72 276.9 231 60.6
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 2.7e-72 276.2 223 62.3
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 3.6e-72 275.8 224 67.9
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 3.6e-72 275.8 234 61.1
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 4.7e-72 275.4 231 60.6
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 6.1e-72 275.0 164 78.7
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 6.1e-72 275.0 226 68.1
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 6.1e-72 275.0 227 63.4
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 8.0e-72 274.6 233 58.8
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 1.8e-71 273.5 250 56.4
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 1.8e-71 273.5 226 66.8
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 3.0e-71 272.7 226 64.2
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 3.0e-71 272.7 268 60.4
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 5.2e-71 271.9 232 59.1
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 5.2e-71 271.9 232 59.1
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 8.8e-71 271.2 222 61.3
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.5e-70 270.4 221 61.5
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 2.6e-70 269.6 225 65.3
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 3.4e-70 269.2 226 61.5
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 9.8e-70 267.7 227 60.8
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 9.8e-70 267.7 223 61.4
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 2.2e-69 266.5 230 67.0
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 2.2e-69 266.5 246 62.2
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 2.8e-69 266.2 246 63.4
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 3.7e-69 265.8 226 57.5
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 6.3e-69 265.0 232 64.2
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 6.3e-69 265.0 219 67.1
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 8.3e-69 264.6 242 56.2
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.1e-68 264.2 219 61.2
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 1.4e-68 263.8 221 63.3
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 2.4e-68 263.1 222 67.1
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 2.0e-67 260.0 183 68.3
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 2.0e-67 260.0 234 63.2
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 2.7e-67 259.6 226 59.3
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 3.5e-67 259.2 168 73.2
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 4.5e-67 258.8 257 56.0
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 4.5e-67 258.8 250 59.2
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 5.9e-67 258.5 229 58.1
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 2.3e-66 256.5 224 62.9
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 2.3e-66 256.5 219 58.4
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 2.9e-66 256.1 221 59.7
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 6.6e-66 255.0 215 65.1
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 9.5e-65 251.1 219 63.0
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 2.1e-64 250.0 197 71.6
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 3.6e-64 249.2 225 62.7
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.4e-63 247.3 218 64.7
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 3.0e-63 246.1 221 56.6
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 8.9e-63 244.6 225 62.2
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 1.2e-62 244.2 249 55.4
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 1.5e-62 243.8 202 62.9
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 2.0e-62 243.4 227 60.4
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 9.8e-62 241.1 225 53.3
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 1.3e-61 240.7 230 60.4
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 1.7e-61 240.4 227 63.4
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 2.9e-61 239.6 230 54.8
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.9e-61 239.6 230 54.8
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.9e-61 239.6 230 54.8
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 2.9e-61 239.6 244 52.5
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.7e-61 239.2 230 54.3
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 3.7e-61 239.2 273 49.5
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.4e-61 238.4 229 56.8
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 9.2e-60 234.6 249 53.8
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 1.6e-59 233.8 246 52.0
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 3.5e-59 232.6 221 57.9
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 7.8e-59 231.5 140 77.9
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.5e-57 227.3 261 54.4
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 2.5e-57 226.5 142 74.6
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.0e-55 221.1 269 47.6
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 2.0e-54 216.9 220 53.6
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 3.4e-54 216.1 139 72.7
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 6.0e-51 205.3 137 68.6
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.1e-49 201.1 133 67.7
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 2.5e-49 199.9 130 74.6
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 3.3e-49 199.5 133 70.7
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 2.8e-48 196.4 172 58.7
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.2e-46 191.0 141 64.5
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.2e-46 191.0 240 48.8
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 7.5e-46 188.3 130 69.2
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 2.3e-42 176.8 163 50.9
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 3.9e-42 176.0 127 66.1
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 9.5e-41 171.4 138 58.7
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 8.6e-34 148.3 92 71.7
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 8.1e-32 141.7 129 58.9
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 4.0e-31 139.4 96 66.7
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.8e-30 135.6 241 39.4
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 1.3e-29 134.4 88 75.0
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 1.5e-25 120.9 115 53.9
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 4.0e-23 112.8 225 32.0
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 4.6e-19 99.4 123 36.6
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 3.0e-18 96.7 73 61.6
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 8.7e-18 95.1 158 35.4
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 7.4e-17 92.0 100 65.0
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 2.8e-16 90.1 102 42.2
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 1.1e-15 88.2 124 33.9
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 4.0e-15 86.3 117 45.3
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 7.6e-14 82.0 129 31.8
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 5.5e-12 75.9 77 51.9
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 6.0e-11 72.4 92 53.3
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 7.9e-11 72.0 95 54.7
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 1.0e-10 71.6 84 60.7
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 4.3e-09 66.2 87 58.6
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 2.0e-06 57.4 56 48.2


User provided reference genes

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