Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.8e-177 625.2 316 100.0
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.4e-144 516.5 275 95.6
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 1.4e-144 516.5 275 95.6
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 1.1e-112 410.6 328 64.6
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 1.0e-110 404.1 274 73.0
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 3.9e-110 402.1 320 64.1
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 6.6e-110 401.4 275 74.2
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.2e-105 386.3 336 61.0
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.1e-103 379.8 273 69.6
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.4e-99 367.1 268 67.2
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.2e-98 364.0 268 66.4
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 2.0e-90 336.7 279 63.1
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 9.9e-90 334.3 285 60.0
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 1.3e-89 334.0 245 67.3
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 3.8e-89 332.4 280 60.0
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 3.8e-89 332.4 274 59.9
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 6.4e-89 331.6 278 60.4
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 4.2e-88 328.9 245 65.3
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 2.1e-87 326.6 256 62.5
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.3e-86 323.9 273 58.6
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 2.3e-86 323.2 272 57.7
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 3.9e-86 322.4 271 60.5
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 5.1e-86 322.0 261 60.2
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 4.3e-85 318.9 249 62.2
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 4.3e-85 318.9 264 58.0
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 9.6e-85 317.8 277 59.2
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 9.6e-85 317.8 268 57.5
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 1.3e-84 317.4 331 48.9
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 2.8e-84 316.2 252 58.7
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 3.6e-84 315.8 268 56.7
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 4.8e-84 315.5 268 54.9
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 6.2e-84 315.1 278 56.1
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 6.2e-84 315.1 245 59.2
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 8.1e-84 314.7 334 50.9
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 1.8e-83 313.5 276 55.8
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 1.8e-83 313.5 276 55.4
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 3.1e-83 312.8 272 55.9
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 4.0e-83 312.4 244 60.2
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 1.2e-82 310.8 313 52.1
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 1.5e-82 310.5 337 50.4
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 2.0e-82 310.1 247 59.1
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 3.4e-82 309.3 308 53.6
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 3.4e-82 309.3 271 58.3
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 4.4e-82 308.9 268 55.2
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 7.6e-82 308.1 268 55.2
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 7.6e-82 308.1 269 57.6
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 7.6e-82 308.1 250 58.8
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 2.2e-81 306.6 257 59.9
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 2.9e-81 306.2 249 58.2
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 3.8e-81 305.8 269 55.8
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 6.4e-81 305.1 299 52.8
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 8.4e-81 304.7 268 56.0
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 8.4e-81 304.7 268 56.0
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 1.1e-80 304.3 269 56.9
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 1.1e-80 304.3 268 57.5
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 1.1e-80 304.3 268 57.5
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 1.4e-80 303.9 268 58.6
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 3.2e-80 302.8 268 55.2
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 3.2e-80 302.8 268 55.2
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 3.2e-80 302.8 268 55.2
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 3.2e-80 302.8 249 60.6
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 4.2e-80 302.4 336 52.1
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 7.1e-80 301.6 305 49.8
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 7.1e-80 301.6 268 57.1
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 1.2e-79 300.8 245 58.4
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 1.2e-79 300.8 245 58.4
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 1.2e-79 300.8 245 58.4
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 2.1e-79 300.1 270 54.4
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 3.5e-79 299.3 245 60.4
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 3.5e-79 299.3 269 54.6
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 4.6e-79 298.9 272 55.9
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 1.0e-78 297.7 263 57.4
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 1.7e-78 297.0 271 55.0
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 1.7e-78 297.0 271 55.7
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 8.7e-78 294.7 264 54.9
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.9e-77 293.5 249 56.6
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 4.0e-75 285.8 248 55.2
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 4.0e-75 285.8 261 55.6
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 6.9e-75 285.0 309 48.5
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 9.0e-75 284.6 274 52.6
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 9.0e-75 284.6 273 54.9
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 3.4e-74 282.7 268 54.1
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 4.5e-74 282.3 313 47.6
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 4.5e-74 282.3 341 46.0
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 4.5e-74 282.3 274 51.5
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 5.8e-74 282.0 330 46.1
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 5.8e-74 282.0 336 46.7
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 5.8e-74 282.0 269 53.5
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 9.9e-74 281.2 269 53.5
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 9.9e-74 281.2 274 52.2
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 3.8e-73 279.3 310 47.1
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 3.8e-73 279.3 252 53.6
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 4.9e-73 278.9 246 54.9
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 1.9e-72 276.9 267 50.2
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 2.4e-72 276.6 252 54.4
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 1.6e-71 273.9 278 52.2
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 2.7e-71 273.1 270 53.7
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 2.7e-71 273.1 274 51.1
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 3.5e-71 272.7 271 53.1
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 3.5e-71 272.7 277 49.1
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 1.3e-70 270.8 273 52.0
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 1.1e-69 267.7 273 49.5
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 1.1e-69 267.7 245 54.7
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 9.6e-69 264.6 274 50.0
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 2.1e-68 263.5 267 48.3
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 8.1e-68 261.5 309 47.2
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 1.8e-67 260.4 263 51.7
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 3.1e-67 259.6 265 49.8
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 9.0e-67 258.1 274 50.0
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 1.5e-66 257.3 198 62.1
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 7.6e-66 255.0 264 49.2
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.2e-65 253.4 274 48.2
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 1.1e-64 251.1 319 42.6
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 3.2e-64 249.6 245 51.8
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 1.6e-63 247.3 282 47.2
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 2.1e-63 246.9 282 47.5
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 3.5e-63 246.1 274 48.2
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 4.6e-63 245.7 272 47.8
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 4.6e-63 245.7 272 47.8
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 7.9e-63 245.0 245 50.6
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 1.0e-62 244.6 294 44.2
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.0e-62 244.6 274 48.2
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 1.8e-62 243.8 278 46.4
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 1.1e-61 241.1 250 48.0
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 1.5e-61 240.7 269 47.2
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 1.5e-61 240.7 258 45.0
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 9.6e-61 238.0 283 47.0
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 2.8e-60 236.5 275 45.1
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 2.4e-59 233.4 197 54.3
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 2.4e-59 233.4 260 46.9
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 4.1e-59 232.6 275 44.4
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.2e-58 231.1 275 44.4
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 7.6e-58 228.4 224 51.8
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 1.0e-57 228.0 271 45.8
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 5.0e-57 225.7 263 45.6
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 6.5e-57 225.3 259 44.0
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 1.9e-56 223.8 261 45.6
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 7.1e-56 221.9 275 44.0
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 3.9e-54 216.1 232 47.4
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 5.1e-54 215.7 356 37.9
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 5.7e-53 212.2 255 42.7
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 5.7e-53 212.2 208 51.4
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 9.7e-53 211.5 208 51.0
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 1.6e-52 210.7 260 41.9
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 6.3e-52 208.8 247 44.1
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 4.1e-51 206.1 256 43.0
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 6.9e-51 205.3 273 38.1
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 6.9e-43 178.7 251 40.6
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 2.6e-42 176.8 271 39.1
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 5.0e-41 172.6 157 56.1
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 1.2e-39 167.9 185 45.9
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 3.0e-38 163.3 122 61.5
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.0e-37 160.6 122 57.4
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 5.7e-37 159.1 133 55.6
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 9.7e-37 158.3 184 42.4
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 9.7e-37 158.3 165 46.7
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 2.8e-36 156.8 110 61.8
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 1.0e-33 148.3 155 50.3
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 1.0e-33 148.3 193 42.5
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 1.7e-33 147.5 134 52.2
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 5.0e-33 146.0 121 55.4
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.5e-32 144.4 122 52.5
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 7.2e-32 142.1 272 32.7
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 9.4e-24 115.2 89 56.2
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 1.8e-19 100.9 101 48.5
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 3.1e-19 100.1 81 50.6
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 5.4e-19 99.4 80 52.5
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 4.5e-18 96.3 255 29.8
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 1.2e-15 88.2 76 50.0
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 4.0e-14 83.2 159 38.4
QL03p066087 Quercus lobata HOM05D003755 ORTHO05D004385 2.6e-13 80.5 52 71.2
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 2.7e-10 70.5 67 53.7
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 5.6e-08 62.8 37 73.0
COL.COLO4_35765 Corchorus olitorius HOM05D003755 ORTHO05D160063 1.0e-06 58.5 34 79.4
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 4.0e-06 56.6 36 63.9


User provided reference genes

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