Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A08G241000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 5.7e-68 260.8 129 100.0
Gohir.D08G261700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 1.6e-41 172.9 85 97.6
Gorai.004G279800 Gossypium raimondii HOM05D007609 ORTHO05D009539 1.6e-41 172.9 85 97.6
Thecc.09G111700 Theobroma cacao HOM05D007609 ORTHO05D009539 1.5e-23 113.2 87 66.7
Gorai.010G069800 Gossypium raimondii HOM05D007609 ORTHO05D009539 9.2e-18 94.0 85 54.1
Gohir.D06G060000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 1.6e-17 93.2 103 47.6
Gohir.A06G061700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 2.7e-17 92.4 85 54.1
COL.COLO4_34908 Corchorus olitorius HOM05D007609 ORTHO05D009539 1.5e-15 86.7 85 54.1
Gohir.A07G006801 Gossypium hirsutum HOM05D007609 ORTHO05D009539 1.5e-15 86.7 85 52.9
Gorai.001G004700 Gossypium raimondii HOM05D007609 ORTHO05D009539 1.2e-14 83.6 85 52.9
Gohir.D07G005100 Gossypium hirsutum HOM05D007609 ORTHO05D009539 3.6e-14 82.0 70 60.0
Sabra18G0066900 Salix brachista HOM05D007609 ORTHO05D009539 8.9e-13 77.4 85 48.2
TAR383G0714 Trochodendron aralioides HOM05D007609 ORTHO05D009539 9.8e-12 73.9 81 44.4
Potri.018G078900 Populus trichocarpa HOM05D007609 ORTHO05D009539 3.7e-11 72.0 85 43.5
Cfa003264 Carpinus fangiana HOM05D007609 ORTHO05D009539 1.9e-10 69.7 85 47.1
Manes.03G019500 Manihot esculenta HOM05D007609 ORTHO05D009539 2.4e-10 69.3 85 44.7
TAR626G0143 Trochodendron aralioides HOM05D007609 ORTHO05D025968 2.4e-10 69.3 94 39.4
Haze_25706 Corylus avellana HOM05D007609 ORTHO05D009539 3.2e-10 68.9 86 43.0
Potri.006G159300 Populus trichocarpa HOM05D007609 ORTHO05D009539 4.1e-10 68.6 88 46.6
CSS0012617 Camellia sinensis var. sinensis HOM05D007609 ORTHO05D009539 7.0e-10 67.8 82 42.7
Dinv38045 Davidia involucrata HOM05D007609 ORTHO05D009539 7.0e-10 67.8 83 43.4
Manes.16G116800 Manihot esculenta HOM05D007609 ORTHO05D009539 2.0e-09 66.2 80 46.2
Rhsim08G0221700 Rhododendron simsii HOM05D007609 ORTHO05D009539 2.0e-09 66.2 46 54.3
Lsat_1_v5_gn_4_103641 Lactuca sativa HOM05D007609 ORTHO05D009539 3.5e-09 65.5 78 48.7
Hma1.2p1_0018F.1_g013450 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 4.6e-09 65.1 64 48.4
Cpa.g.sc451.1 Carica papaya HOM05D007609 ORTHO05D009539 6.0e-09 64.7 76 44.7
Aqoxy7G01699 Aquilegia oxysepala HOM05D007609 ORTHO05D009539 1.7e-08 63.2 33 75.8
Eucgr.C03849 Eucalyptus grandis HOM05D007609 ORTHO05D009539 1.7e-08 63.2 60 51.7
vmacro18908 Vaccinium macrocarpon HOM05D007609 ORTHO05D009539 1.7e-08 63.2 84 42.9
Lalb_Chr22g0352851 Lupinus albus HOM05D007609 ORTHO05D009539 2.3e-08 62.8 81 39.5
RcHm_v2.0_Chr2g0090641 Rosa chinensis HOM05D007609 ORTHO05D009539 3.0e-08 62.4 92 42.4
Lj2g0010717 Lotus japonicus HOM05D007609 ORTHO05D009539 3.9e-08 62.0 81 39.5
HanXRQChr10g0317871 Helianthus annuus HOM05D007609 ORTHO05D009539 5.0e-08 61.6 49 55.1
Hma1.2p1_0092F.1_g046650 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 5.0e-08 61.6 82 42.7
Nitab4.5_0005851g0050 Nicotiana tabacum HOM05D007609 ORTHO05D009539 5.0e-08 61.6 79 41.8
PGSC0003DMG400005604 Solanum tuberosum HOM05D007609 ORTHO05D009539 1.1e-07 60.5 76 42.1
Ciclev10010038m.g Citrus clementina HOM05D007609 ORTHO05D009539 1.9e-07 59.7 32 65.6
DCAR_023052 Daucus carota HOM05D007609 ORTHO05D009539 1.9e-07 59.7 84 42.9
Glyma.07G087100 Glycine max HOM05D007609 ORTHO05D009539 1.9e-07 59.7 81 44.4
Solyc03g120160.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 2.5e-07 59.3 78 44.9
TPR.G35275 Trifolium pratense HOM05D007609 ORTHO05D009539 2.5e-07 59.3 85 37.6
Eucgr.C01049 Eucalyptus grandis HOM05D007609 ORTHO05D009539 3.3e-07 58.9 80 41.2
Nn2g11764 Nelumbo nucifera HOM05D007609 ORTHO05D009539 3.3e-07 58.9 90 36.7
Sopen06g024990 Solanum pennellii HOM05D007609 ORTHO05D009539 3.3e-07 58.9 30 70.0
PGSC0003DMG400016536 Solanum tuberosum HOM05D007609 ORTHO05D009539 3.3e-07 58.9 30 70.0
Sopen03g039040 Solanum pennellii HOM05D007609 ORTHO05D009539 4.3e-07 58.5 77 44.2
DCAR_028717 Daucus carota HOM05D007609 ORTHO05D009539 5.6e-07 58.2 79 41.8
FAN28G0995 Fragaria x ananassa HOM05D007609 ORTHO05D009539 7.3e-07 57.8 92 40.2
Sed0020512 Sechium edule HOM05D007609 ORTHO05D009539 7.3e-07 57.8 84 40.5
Nitab4.5_0000351g0200 Nicotiana tabacum HOM05D007609 ORTHO05D009539 9.5e-07 57.4 38 60.5
Solyc06g066700.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 1.2e-06 57.0 33 69.7
FvH4_1g05030 Fragaria vesca HOM05D007609 ORTHO05D009539 1.6e-06 56.6 92 40.2
unitig_899.g14776 Utricularia gibba HOM05D007609 ORTHO05D009539 1.6e-06 56.6 50 48.0
Atru.chr7.1339 Acer truncatum HOM05D007609 ORTHO05D009539 2.1e-06 56.2 83 42.2
Medtr6g086445 Medicago truncatula HOM05D007609 ORTHO05D009539 2.1e-06 56.2 87 36.8
Prupe.7G229700 Prunus persica HOM05D007609 ORTHO05D009539 2.1e-06 56.2 37 56.8
CiPaw.01G239000 Carya illinoinensis HOM05D007609 ORTHO05D009539 2.8e-06 55.8 52 48.1
Migut.D01028 Erythranthe guttata HOM05D007609 ORTHO05D009539 2.8e-06 55.8 80 42.5
FAN26G1953 Fragaria x ananassa HOM05D007609 ORTHO05D009539 2.8e-06 55.8 92 40.2
FAN26G2876 Fragaria x ananassa HOM05D007609 ORTHO05D009539 2.8e-06 55.8 92 40.2
Lsat_1_v5_gn_5_101501 Lactuca sativa HOM05D007609 ORTHO05D009539 2.8e-06 55.8 38 55.3
Peaxi162Scf00207g00095 Petunia axillaris HOM05D007609 ORTHO05D009539 3.6e-06 55.5 83 39.8
Peaxi162Scf00560g00120 Petunia axillaris HOM05D007609 ORTHO05D009539 3.6e-06 55.5 75 37.3
Solyc03g120155.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 3.6e-06 55.5 33 66.7
Sopen03g039030 Solanum pennellii HOM05D007609 ORTHO05D009539 3.6e-06 55.5 33 66.7
Ca_25525_v3 Cicer arietinum L. HOM05D007609 ORTHO05D009539 4.7e-06 55.1 82 37.8
QL02p085521 Quercus lobata HOM05D007609 ORTHO05D009539 4.7e-06 55.1 88 43.2
QL05p023464 Quercus lobata HOM05D007609 ORTHO05D009539 4.7e-06 55.1 83 37.3
Sc18g0001160 Simmondsia chinensis HOM05D007609 ORTHO05D009539 4.7e-06 55.1 25 76.0
FAN23G1574 Fragaria x ananassa HOM05D007609 ORTHO05D009539 8.1e-06 54.3 31 67.7


User provided reference genes

Program Settings