Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.4e-265 919.1 476 100.0
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 1.6e-261 905.6 477 98.5
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.0e-260 902.9 477 98.3
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 1.7e-231 805.8 477 87.2
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 1.5e-227 792.7 477 86.4
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 4.3e-222 774.6 486 83.5
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 1.1e-220 770.0 477 84.3
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 2.3e-207 725.7 484 78.5
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 4.8e-197 691.4 486 74.3
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 2.6e-195 685.6 484 75.6
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 3.4e-195 685.3 490 73.3
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 9.4e-193 677.2 489 74.0
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 1.4e-191 673.3 492 72.0
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 5.1e-191 671.4 485 72.4
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 3.3e-190 668.7 484 71.5
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 4.3e-190 668.3 487 73.5
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 4.1e-188 661.8 484 70.5
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 9.1e-188 660.6 484 73.1
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 2.0e-187 659.4 460 74.8
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.6e-187 659.1 490 71.0
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 3.4e-187 658.7 460 75.2
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 5.0e-186 654.8 485 70.7
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.4e-185 653.3 505 68.9
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.9e-185 652.9 490 70.6
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.2e-184 650.2 488 71.9
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 2.1e-184 649.4 486 71.0
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 2.1e-184 649.4 501 70.9
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 6.1e-184 647.9 477 70.6
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 3.3e-182 642.1 495 69.9
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 4.4e-182 641.7 483 68.1
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 4.4e-182 641.7 489 69.7
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 5.7e-182 641.3 485 69.3
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 8.2e-181 637.5 491 69.7
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 1.1e-180 637.1 459 73.2
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 1.6e-179 633.3 486 68.9
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 4.7e-176 621.7 456 71.1
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.4e-175 620.2 417 77.2
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.8e-175 619.8 483 66.0
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.8e-175 619.8 485 66.2
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 4.4e-174 615.1 483 65.0
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 9.7e-174 614.0 484 66.3
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.8e-173 612.5 484 66.5
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 1.4e-172 610.1 484 66.1
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.5e-169 600.1 476 66.6
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 1.5e-169 600.1 488 66.0
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 5.5e-169 598.2 483 64.0
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.6e-168 596.7 489 64.0
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.6e-168 596.7 489 64.2
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 2.7e-168 595.9 484 66.1
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.6e-168 595.5 515 62.1
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.6e-168 595.5 470 67.2
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 1.0e-167 594.0 484 65.3
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.8e-167 593.2 485 63.5
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 2.3e-167 592.8 483 64.0
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 1.2e-166 590.5 499 64.9
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 1.2e-166 590.5 499 64.9
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.4e-166 589.0 491 64.8
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 4.4e-166 588.6 491 65.2
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 7.5e-166 587.8 507 63.1
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 2.8e-165 585.9 494 64.8
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 3.7e-165 585.5 492 64.8
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 4.8e-165 585.1 486 64.0
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 6.3e-165 584.7 484 64.9
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 2.0e-163 579.7 498 64.3
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 3.5e-163 578.9 511 62.6
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 1.7e-162 576.6 485 64.7
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.5e-161 573.5 498 63.9
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 1.9e-161 573.2 481 65.9
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.9e-161 573.2 462 66.2
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 2.5e-161 572.8 497 63.8
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 9.5e-161 570.9 481 63.6
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 2.1e-160 569.7 495 64.2
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 8.0e-160 567.8 493 62.3
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 8.0e-160 567.8 484 63.2
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.4e-159 567.0 490 62.0
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 2.3e-159 566.2 491 63.5
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 8.8e-159 564.3 490 62.9
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 8.8e-159 564.3 492 62.8
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 2.6e-158 562.8 491 64.4
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 5.7e-158 561.6 493 63.9
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 2.2e-157 559.7 484 62.2
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 2.2e-157 559.7 443 67.7
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 6.3e-157 558.1 488 62.7
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.1e-156 557.4 485 60.4
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 7.0e-156 554.7 485 61.9
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 7.0e-156 554.7 405 71.4
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 1.2e-155 553.9 430 71.4
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 7.7e-155 551.2 507 62.7
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 1.0e-154 550.8 491 60.7
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 1.9e-153 546.6 479 61.2
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 5.6e-153 545.0 484 61.2
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 7.3e-153 544.7 463 61.6
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 7.3e-153 544.7 485 61.0
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 1.6e-152 543.5 517 58.8
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 3.6e-152 542.3 485 60.8
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 3.6e-152 542.3 484 61.2
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 4.7e-152 542.0 476 61.1
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 6.1e-152 541.6 485 60.2
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 4.0e-151 538.9 444 64.4
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 5.2e-151 538.5 486 59.1
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 5.2e-151 538.5 489 60.5
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 8.9e-151 537.7 586 53.8
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 3.4e-150 535.8 544 56.8
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 9.8e-150 534.3 487 59.8
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 9.8e-150 534.3 493 60.4
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 1.3e-149 533.9 486 59.7
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 1.3e-149 533.9 466 62.2
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 6.4e-149 531.6 485 60.2
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 7.0e-148 528.1 508 57.5
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 2.7e-147 526.2 491 58.5
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 2.7e-147 526.2 485 59.0
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 5.0e-146 521.9 487 58.7
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 6.6e-146 521.5 484 58.9
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 9.5e-145 517.7 491 57.2
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.6e-144 516.9 532 55.8
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.1e-144 516.5 532 55.8
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.2e-141 506.5 454 62.6
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 7.0e-140 501.5 485 57.1
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 1.5e-137 493.8 484 57.9
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 9.5e-137 491.1 401 62.8
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 1.2e-136 490.7 486 56.4
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.8e-136 489.6 462 59.1
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.8e-135 486.9 389 64.0
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 8.9e-135 484.6 452 57.3
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 5.4e-132 475.3 459 56.6
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 7.1e-132 474.9 482 56.0
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 4.4e-126 455.7 498 55.2
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 1.0e-122 444.5 483 52.8
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 7.6e-118 428.3 457 52.3
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 1.4e-116 424.1 479 52.0
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.9e-116 423.7 450 56.4
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 2.8e-112 409.8 396 59.8
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 6.0e-107 392.1 487 51.3
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 6.9e-103 378.6 482 51.0
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 1.2e-102 377.9 410 54.6
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 6.0e-99 365.5 347 59.1
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 1.5e-97 360.9 450 44.0
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 1.5e-97 360.9 216 79.2
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 4.3e-97 359.4 216 78.2
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.4e-95 354.4 408 52.0
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 1.3e-93 347.8 372 51.6
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 1.7e-93 347.4 441 46.3
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 6.7e-90 335.5 308 53.6
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.5e-86 324.3 341 49.9
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 4.2e-84 316.2 294 54.4
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 5.7e-81 305.8 222 64.4
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 5.1e-74 282.7 176 76.7
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 7.7e-62 242.3 308 50.0
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.8e-56 223.0 156 70.5
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 1.2e-54 218.4 216 58.8
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.7e-54 217.2 134 75.4
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 2.4e-47 194.1 268 47.0
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 5.4e-47 193.0 289 38.1
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 1.8e-39 167.9 228 50.4
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 2.9e-37 160.6 244 33.6
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 5.6e-36 156.4 190 40.0
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 1.4e-31 141.7 95 66.3
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 8.9e-26 122.5 76 73.7
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 8.9e-26 122.5 118 61.0
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.7e-24 118.2 70 75.7
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 6.2e-19 99.8 60 76.7
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 6.8e-18 96.3 114 52.6
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 9.9e-17 92.4 233 27.5
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 3.6e-11 73.9 43 79.1
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.4e-10 72.0 80 48.8
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 4.4e-09 67.0 74 47.3
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 1.9e-07 61.6 71 40.8
FvH4_3g18772 Fragaria vesca HOM05D004208 ORTHO05D198159 3.2e-07 60.8 59 54.2


User provided reference genes

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