Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.4e-48 195.3 106 100.0
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 5.4e-48 194.1 106 99.1
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.7e-47 191.8 106 98.1
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 9.8e-34 146.7 107 75.7
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 2.9e-33 145.2 107 76.6
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 1.6e-28 129.4 108 72.2
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 4.7e-28 127.9 108 67.6
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 4.9e-25 117.9 108 65.7
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 6.4e-25 117.5 106 64.2
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 8.3e-25 117.1 107 63.6
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 8.3e-25 117.1 107 62.6
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 1.9e-24 115.9 107 60.7
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 7.0e-24 114.0 107 62.6
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 4.6e-23 111.3 110 59.1
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 4.6e-23 111.3 107 61.7
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 6.6e-22 107.5 108 63.9
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 1.1e-21 106.7 108 60.2
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 1.5e-21 106.3 108 62.0
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 3.3e-21 105.1 109 59.6
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 5.6e-21 104.4 106 60.4
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 1.6e-20 102.8 94 63.8
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 6.2e-20 100.9 108 59.3
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 6.2e-20 100.9 110 55.5
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 8.1e-20 100.5 110 58.2
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 8.1e-20 100.5 110 58.2
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.4e-19 99.8 104 54.8
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 1.8e-19 99.4 111 55.9
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 1.8e-19 99.4 105 61.0
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 2.3e-19 99.0 113 57.5
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 6.8e-19 97.4 106 58.5
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 6.8e-19 97.4 110 54.5
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 8.9e-19 97.1 108 55.6
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 8.9e-19 97.1 116 52.6
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 1.5e-18 96.3 108 55.6
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 2.0e-18 95.9 108 54.6
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 3.4e-18 95.1 111 53.2
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 3.4e-18 95.1 107 56.1
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 1.7e-17 92.8 108 57.4
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 1.7e-17 92.8 111 53.2
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 1.7e-17 92.8 108 58.3
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.9e-17 92.0 106 56.6
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.9e-17 92.0 106 56.6
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 3.7e-17 91.7 105 52.4
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 4.9e-17 91.3 103 57.3
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 6.4e-17 90.9 107 57.0
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 6.4e-17 90.9 109 52.3
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 1.1e-16 90.1 109 52.3
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 3.2e-16 88.6 108 48.1
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 4.1e-16 88.2 106 50.9
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 4.1e-16 88.2 105 51.4
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 5.4e-16 87.8 116 49.1
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 7.1e-16 87.4 108 51.9
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 9.2e-16 87.0 113 51.3
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 1.2e-15 86.7 109 51.4
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.2e-15 86.7 108 50.0
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 4.6e-15 84.7 108 48.1
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 4.6e-15 84.7 109 53.2
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 6.0e-15 84.3 109 50.5
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 6.0e-15 84.3 113 53.1
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 1.0e-14 83.6 114 49.1
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 1.0e-14 83.6 113 52.2
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 1.0e-14 83.6 113 52.2
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 1.3e-14 83.2 104 54.8
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 3.9e-14 81.6 112 50.0
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 3.9e-14 81.6 103 51.5
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 3.9e-14 81.6 114 50.9
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 8.6e-14 80.5 110 50.9
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 8.6e-14 80.5 107 49.5
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 8.6e-14 80.5 109 48.6
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 1.1e-13 80.1 108 48.1
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 1.1e-13 80.1 112 47.3
Potri.001G265000 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.5e-13 79.7 87 57.5
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 1.9e-13 79.3 108 49.1
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 2.5e-13 79.0 109 48.6
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 2.5e-13 79.0 109 48.6
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 2.5e-13 79.0 109 48.6
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 3.3e-13 78.6 107 46.7
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 3.3e-13 78.6 107 45.8
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 3.3e-13 78.6 116 53.4
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 3.3e-13 78.6 107 46.7
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 4.3e-13 78.2 109 47.7
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 4.3e-13 78.2 107 51.4
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 7.3e-13 77.4 106 50.9
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 1.6e-12 76.3 107 47.7
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 1.6e-12 76.3 107 47.7
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 1.6e-12 76.3 109 47.7
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 1.6e-12 76.3 111 50.5
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 1.6e-12 76.3 105 48.6
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 2.1e-12 75.9 107 45.8
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 2.8e-12 75.5 107 49.5
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 2.8e-12 75.5 109 46.8
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 2.8e-12 75.5 109 50.5
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 3.6e-12 75.1 109 47.7
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 3.6e-12 75.1 105 49.5
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 3.6e-12 75.1 108 44.4
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 6.2e-12 74.3 108 48.1
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 1.1e-11 73.6 107 47.7
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 1.1e-11 73.6 107 47.7
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 1.4e-11 73.2 107 48.6
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 1.4e-11 73.2 107 48.6
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 1.4e-11 73.2 107 48.6
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 1.4e-11 73.2 89 47.2
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.4e-11 73.2 107 46.7
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.8e-11 72.8 106 41.5
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.3e-11 72.4 111 47.7
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 2.3e-11 72.4 111 49.5
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 3.1e-11 72.0 108 46.3
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 3.1e-11 72.0 108 46.3
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 6.8e-11 70.9 110 46.4
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.2e-10 70.1 96 47.9
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 1.5e-10 69.7 107 45.8
Rhsim01G0129200 Rhododendron simsii HOM05D000074 ORTHO05D004958 2.6e-10 68.9 99 48.5
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 3.4e-10 68.6 108 45.4
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 5.8e-10 67.8 110 48.2
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 5.8e-10 67.8 113 46.0
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 5.8e-10 67.8 105 46.7
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 1.3e-09 66.6 115 47.8
Dinv43432 Davidia involucrata HOM05D004268 ORTHO05D004958 1.7e-09 66.2 94 45.7
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 1.7e-09 66.2 115 42.6
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 2.2e-09 65.9 109 45.9
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 2.2e-09 65.9 109 45.9
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 2.2e-09 65.9 108 42.6
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 2.9e-09 65.5 107 41.1
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 2.9e-09 65.5 107 41.1
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 3.8e-09 65.1 107 44.9
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 4.9e-09 64.7 110 40.9
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 8.4e-09 63.9 110 44.5
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 1.9e-08 62.8 110 43.6
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 2.4e-08 62.4 111 39.6
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 5.4e-08 61.2 113 39.8
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 5.4e-08 61.2 113 39.8
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 7.1e-08 60.8 38 84.2
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 7.1e-08 60.8 109 42.2
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 9.2e-08 60.5 115 41.7
CSS0020424 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 2.1e-07 59.3 109 44.0
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 2.1e-07 59.3 92 46.7
PGSC0003DMG400004639 Solanum tuberosum HOM05D004268 ORTHO05D004958 2.1e-07 59.3 110 44.5
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 2.7e-07 58.9 109 40.4
Os02g0581100 Oryza sativa ssp. japonica HOM05D004268 ORTHO05D004958 2.7e-07 58.9 120 40.0
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 3.5e-07 58.5 110 48.2
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 3.5e-07 58.5 38 84.2
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 1.0e-06 57.0 39 74.4
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 1.0e-06 57.0 121 38.8
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 1.7e-06 56.2 120 43.3
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 1.7e-06 56.2 114 44.7
Zm00001eb245320 Zea mays HOM05D004268 ORTHO05D004958 3.0e-06 55.5 108 38.9
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 5.1e-06 54.7 107 39.3
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 5.1e-06 54.7 113 42.5
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 6.6e-06 54.3 113 41.6
Hma1.2p1_0495F.1_g165730 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 8.6e-06 53.9 38 68.4


User provided reference genes

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