Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A08G143600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 2.9e-165 585.1 287 100.0
Gorai.004G171600 Gossypium raimondii HOM05D006111 ORTHO05D007683 1.7e-136 489.6 243 99.2
Gohir.D08G164600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 2.4e-135 485.7 243 98.4
Duzib268G0420 Durio zibethinus HOM05D006111 ORTHO05D007683 1.7e-120 436.4 244 88.9
Thecc.01G409400 Theobroma cacao HOM05D006111 ORTHO05D007683 3.0e-117 425.6 245 86.1
FvH4_7g01190 Fragaria vesca HOM05D006111 ORTHO05D007683 4.4e-105 385.2 244 76.2
FAN06G2641 Fragaria x ananassa HOM05D006111 ORTHO05D007683 4.4e-105 385.2 244 76.2
Atru.chr11.2607 Acer truncatum HOM05D006111 ORTHO05D007683 9.9e-105 384.0 249 76.7
RcHm_v2.0_Chr1g0316521 Rosa chinensis HOM05D006111 ORTHO05D007683 2.2e-104 382.9 246 75.2
MD02G1308600 Malus domestica HOM05D006111 ORTHO05D007683 1.1e-103 380.6 249 73.9
MD07G1013000 Malus domestica HOM05D006111 ORTHO05D007683 2.4e-103 379.4 249 73.9
FAN03G2464 Fragaria x ananassa HOM05D006111 ORTHO05D007683 3.2e-103 379.0 246 75.2
FAN10G2658 Fragaria x ananassa HOM05D006111 ORTHO05D007683 3.2e-103 379.0 246 75.2
QL04p008312 Quercus lobata HOM05D006111 ORTHO05D007683 3.2e-103 379.0 251 76.5
FAN01G0043 Fragaria x ananassa HOM05D006111 ORTHO05D007683 7.1e-103 377.9 246 75.2
TWI09G1338 Tripterygium wilfordii HOM05D006111 ORTHO05D007683 3.5e-102 375.6 246 74.4
Ciclev10031806m.g Citrus clementina HOM05D006111 ORTHO05D007683 1.7e-101 373.2 242 75.6
CiPaw.13G006200 Carya illinoinensis HOM05D006111 ORTHO05D007683 5.1e-101 371.7 246 75.6
Dinv43431 Davidia involucrata HOM05D006111 ORTHO05D007683 6.6e-101 371.3 249 74.7
COL.COLO4_04864 Corchorus olitorius HOM05D006111 ORTHO05D007683 2.5e-100 369.4 249 75.9
Haze_03183 Corylus avellana HOM05D006111 ORTHO05D007683 7.3e-100 367.9 250 75.2
Lalb_Chr01g0015831 Lupinus albus HOM05D006111 ORTHO05D007683 7.3e-100 367.9 244 73.0
Prupe.2G015400 Prunus persica HOM05D006111 ORTHO05D007683 9.6e-100 367.5 250 72.8
ClCG09G004060 Citrullus lanatus HOM05D006111 ORTHO05D007683 8.1e-99 364.4 260 71.5
CSS0012829 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 1.8e-98 363.2 245 73.5
CSS0034733 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 1.8e-98 363.2 245 73.5
Nn7g36241 Nelumbo nucifera HOM05D006111 ORTHO05D007683 4.0e-98 362.1 256 71.1
Potri.009G059600 Populus trichocarpa HOM05D006111 ORTHO05D007683 4.0e-98 362.1 250 71.6
Eucgr.J01211 Eucalyptus grandis HOM05D006111 ORTHO05D007683 5.3e-98 361.7 258 69.4
Sc10g0000130 Simmondsia chinensis HOM05D006111 ORTHO05D007683 6.9e-98 361.3 250 70.8
CsaV3_7G030960 Cucumis sativus L. HOM05D006111 ORTHO05D007683 1.2e-97 360.5 259 69.5
TAR623G0061 Trochodendron aralioides HOM05D006111 ORTHO05D007683 1.2e-97 360.5 248 71.4
Manes.10G140800 Manihot esculenta HOM05D006111 ORTHO05D007683 2.0e-97 359.8 247 72.9
PGR044G0412 Punica granatum HOM05D006111 ORTHO05D007683 2.0e-97 359.8 263 69.6
Aqoxy1G00288 Aquilegia oxysepala HOM05D006111 ORTHO05D007683 4.4e-97 358.6 258 69.4
Sed0027336 Sechium edule HOM05D006111 ORTHO05D007683 1.7e-96 356.7 263 68.8
MELO3C023560.2 Cucumis melo HOM05D006111 ORTHO05D007683 4.9e-96 355.1 280 65.7
Potri.009G059800 Populus trichocarpa HOM05D006111 ORTHO05D007683 1.1e-95 354.0 252 70.2
PSO339G0604 Papaver somniferum HOM05D006111 ORTHO05D007683 5.4e-95 351.7 273 64.1
THA.LOC104819080 Tarenaya hassleriana HOM05D006111 ORTHO05D007683 5.4e-95 351.7 253 70.0
DCAR_015173 Daucus carota HOM05D006111 ORTHO05D007683 7.1e-95 351.3 244 71.3
PSO384G4428 Papaver somniferum HOM05D006111 ORTHO05D007683 9.3e-95 350.9 273 64.5
CARHR082760 Cardamine hirsuta HOM05D006111 ORTHO05D007683 5.1e-93 345.1 245 71.4
CAN.G666.14 Capsicum annuum HOM05D006111 ORTHO05D007683 6.6e-93 344.7 244 69.3
AL3G19390 Arabidopsis lyrata HOM05D006111 ORTHO05D007683 1.9e-92 343.2 245 70.6
MBI02_g05669_MAGBIO Magnolia biondii HOM05D006111 ORTHO05D007683 3.3e-92 342.4 263 67.3
Ah.10g038770 Amaranthus hybridus HOM05D006111 ORTHO05D007683 4.3e-92 342.0 278 62.9
AT3G08010 Arabidopsis thaliana HOM05D006111 ORTHO05D007683 9.6e-92 340.9 245 70.2
CANSAT80G0546 Cannabis sativa HOM05D006111 ORTHO05D007683 9.6e-92 340.9 255 67.8
HanXRQChr09g0260521 Helianthus annuus HOM05D006111 ORTHO05D007683 1.3e-91 340.5 249 70.7
Oeu014586.1 Olea europaea HOM05D006111 ORTHO05D007683 1.3e-91 340.5 257 69.3
Carub.0003s0759 Capsella rubella HOM05D006111 ORTHO05D007683 2.1e-91 339.7 245 69.8
Lsat_1_v5_gn_4_136121 Lactuca sativa HOM05D006111 ORTHO05D007683 2.8e-91 339.3 248 69.8
Peaxi162Scf00818g00127 Petunia axillaris HOM05D006111 ORTHO05D007683 2.8e-91 339.3 251 68.9
SalBow6G4116 Salvia bowleyana HOM05D006111 ORTHO05D007683 8.1e-91 337.8 260 69.2
SalBow6G6970 Salvia bowleyana HOM05D006111 ORTHO05D007683 8.1e-91 337.8 260 69.2
EL10Ac2g04342 Beta vulgaris HOM05D006111 ORTHO05D007683 1.1e-90 337.4 254 67.7
Migut.N01606 Erythranthe guttata HOM05D006111 ORTHO05D007683 1.4e-90 337.0 251 68.9
Lj3g0026579 Lotus japonicus HOM05D006111 ORTHO05D007683 3.1e-90 335.9 250 64.8
Thhalv10020943m.g Eutrema salsugineum HOM05D006111 ORTHO05D007683 6.9e-90 334.7 250 68.0
Sabra09G0044000 Salix brachista HOM05D006111 ORTHO05D007683 1.2e-89 334.0 249 68.3
AUR62023076 Chenopodium quinoa HOM05D006111 ORTHO05D007683 2.0e-89 333.2 269 62.5
AUR62009394 Chenopodium quinoa HOM05D006111 ORTHO05D007683 2.6e-89 332.8 270 63.0
AUR62043480 Chenopodium quinoa HOM05D006111 ORTHO05D007683 2.6e-89 332.8 277 60.6
Sp3g06920 Schrenkiella parvula HOM05D006111 ORTHO05D007683 3.4e-89 332.4 250 68.4
Aa31LG5G18560 Aethionema arabicum HOM05D006111 ORTHO05D007683 4.5e-89 332.0 251 67.7
Cc01_g06700 Coffea canephora HOM05D006111 ORTHO05D007683 1.3e-88 330.5 249 68.3
SGA_v2.0_scaffold24G10670 Striga asiatica HOM05D006111 ORTHO05D007683 1.7e-88 330.1 294 60.2
Glyma.10G089700 Glycine max HOM05D006111 ORTHO05D007683 6.4e-88 328.2 250 64.4
Phvul.005G024500 Phaseolus vulgaris HOM05D006111 ORTHO05D007683 6.4e-88 328.2 244 65.2
vmacro21191 Vaccinium macrocarpon HOM05D006111 ORTHO05D007683 6.4e-88 328.2 323 55.7
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 1.1e-87 327.4 186 81.7
arahy.Tifrunner.gnm1.ann1.M31XXH Arachis hypogaea HOM05D006111 ORTHO05D007683 2.4e-87 326.2 251 66.9
arahy.Tifrunner.gnm1.ann1.YZE6TL Arachis hypogaea HOM05D006111 ORTHO05D007683 2.4e-87 326.2 251 66.9
MSTRG.17026 Avicennia marina HOM05D006111 ORTHO05D007683 4.2e-87 325.5 258 65.5
Glyma.15G275900 Glycine max HOM05D006111 ORTHO05D007683 1.2e-86 323.9 250 63.6
C03p43240 Brassica napus HOM05D006111 ORTHO05D007683 3.5e-86 322.4 244 67.2
Hund21484 Selenicereus undatus HOM05D006111 ORTHO05D007683 3.5e-86 322.4 256 63.3
Ca_14461_v3 Cicer arietinum L. HOM05D006111 ORTHO05D007683 6.0e-86 321.6 244 64.3
VMungo1080G1123 Vigna mungo HOM05D006111 ORTHO05D007683 1.0e-85 320.9 244 65.2
Solyc02g005200.4 Solanum lycopersicum HOM05D006111 ORTHO05D007683 2.3e-85 319.7 231 68.4
Sopen02g001570 Solanum pennellii HOM05D006111 ORTHO05D007683 2.3e-85 319.7 231 68.4
Lj5C169G9 Lonicera japonica HOM05D006111 ORTHO05D007683 6.7e-85 318.2 166 86.7
Nitab4.5_0001001g0030 Nicotiana tabacum HOM05D006111 ORTHO05D007683 1.9e-84 316.6 244 65.6
CDE05G1285 Ceratophyllum demersum HOM05D006111 ORTHO05D007683 5.6e-84 315.1 255 62.7
GSVIVG01032129001 Vitis vinifera HOM05D006111 ORTHO05D007683 5.6e-84 315.1 166 84.9
Cfa010790 Carpinus fangiana HOM05D006111 ORTHO05D007683 8.1e-83 311.2 246 65.9
Medtr3g030950 Medicago truncatula HOM05D006111 ORTHO05D007683 9.0e-82 307.8 249 61.8
PGSC0003DMG400006635 Solanum tuberosum HOM05D006111 ORTHO05D007683 1.2e-81 307.4 239 64.4
ATR0332G055 Amborella trichopoda HOM05D006111 ORTHO05D007683 1.3e-80 303.9 250 61.6
HPP92_009763 Vanilla planifolia HOM05D006111 ORTHO05D007683 9.3e-79 297.7 276 58.7
Cpa.g.sc125.25 Carica papaya HOM05D006111 ORTHO05D007683 3.5e-78 295.8 286 57.0
Psat5g208360 Pisum sativum HOM05D006111 ORTHO05D007683 5.1e-77 292.0 269 58.0
Rhsim01G0128600 Rhododendron simsii HOM05D006111 ORTHO05D007683 5.1e-77 292.0 356 49.2
unitig_749.g14328 Utricularia gibba HOM05D006111 ORTHO05D007683 4.3e-76 288.9 194 68.0
Zm00001eb246820 Zea mays HOM05D006111 ORTHO05D007683 5.6e-76 288.5 187 67.9
Psat3g069160 Pisum sativum HOM05D006111 ORTHO05D007683 3.2e-71 272.7 163 73.6
Nitab4.5_0000139g0200 Nicotiana tabacum HOM05D006111 ORTHO05D007683 1.3e-67 260.8 244 57.0
Os02g0610800 Oryza sativa ssp. japonica HOM05D006111 ORTHO05D007683 1.8e-66 256.9 173 66.5
Actinidia21546 Actinidia chinensis HOM05D006111 ORTHO05D007683 4.2e-63 245.7 200 62.5
Mapoly0153s0005 Marchantia polymorpha HOM05D006111 ORTHO05D007683 5.5e-63 245.4 160 67.5
Pp3c6_22710 Physcomitrium patens HOM05D006111 ORTHO05D007683 1.2e-62 244.2 191 60.2
Pp3c5_6760 Physcomitrium patens HOM05D006111 ORTHO05D007683 5.1e-61 238.8 185 59.5
AagrBONN_evm.TU.Sc2ySwM_344.1799 Anthoceros agrestis HOM05D006111 ORTHO05D007683 7.4e-60 235.0 169 61.5
SMO353G0296 Selaginella moellendorffii HOM05D006111 ORTHO05D007683 3.2e-47 193.0 158 50.6
PRCOL_00003534 Prasinoderma coloniale HOM05D006111 ORTHO05D007683 1.0e-45 188.0 179 46.9
A03p35600 Brassica napus HOM05D006111 ORTHO05D007683 7.4e-44 181.8 167 60.5
BcaB03g11554 Brassica carinata HOM05D006111 ORTHO05D007683 3.5e-41 172.9 95 81.1
Cre17.g702500 Chlamydomonas reinhardtii HOM05D006111 ORTHO05D007683 1.7e-40 170.6 174 47.1
MCO10G268 Micromonas commoda HOM05D006111 ORTHO05D007683 1.5e-39 167.5 152 48.7
Prupe.2G016000 Prunus persica HOM05D006111 ORTHO05D007683 1.5e-39 167.5 84 88.1
SEGI_32608 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 2.1e-38 163.7 108 66.7
TPR.G35304 Trifolium pratense HOM05D006111 ORTHO05D007683 5.7e-36 155.6 97 71.1
A03p35610 Brassica napus HOM05D006111 ORTHO05D007683 1.8e-34 150.6 80 82.5
BolC3t16593H Brassica oleracea HOM05D006111 ORTHO05D007683 1.8e-34 150.6 80 82.5
BraA03t12736Z Brassica rapa HOM05D006111 ORTHO05D007683 1.8e-34 150.6 80 82.5
HPP92_009752 Vanilla planifolia HOM05D006111 ORTHO05D007683 5.3e-34 149.1 172 51.7
Medtr3g030975 Medicago truncatula HOM05D006111 ORTHO05D007683 2.0e-33 147.1 80 80.0
CBR_g5588 Chara braunii HOM05D006111 ORTHO05D007683 1.0e-32 144.8 95 67.4
Actinidia20661 Actinidia chinensis HOM05D006111 ORTHO05D007683 5.0e-32 142.5 159 48.4
HanXRQChr12g0362881 Helianthus annuus HOM05D006111 ORTHO05D007683 7.2e-23 112.1 62 79.0
Medtr8g104810 Medicago truncatula HOM05D006111 ORTHO05D007683 2.3e-21 107.1 64 73.4
HPP92_009753 Vanilla planifolia HOM05D006111 ORTHO05D007683 6.6e-16 89.0 66 65.2
TPR.G36152 Trifolium pratense HOM05D006111 ORTHO05D007683 1.4e-13 81.3 102 47.1
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 1.2e-06 58.2 43 60.5


User provided reference genes

Program Settings