Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A08G130900 Gossypium hirsutum HOM05D007705 ORTHO05D009720 3.8e-35 151.0 78 100.0
Gohir.D08G152400 Gossypium hirsutum HOM05D007705 ORTHO05D009720 2.1e-33 145.2 78 94.9
Duzib133G1093 Durio zibethinus HOM05D007705 ORTHO05D009720 2.5e-26 121.7 78 85.9
Gorai.004G158300 Gossypium raimondii HOM05D007705 ORTHO05D009720 1.6e-25 119.0 78 80.8
Thecc.01G360600 Theobroma cacao HOM05D007705 ORTHO05D009720 4.7e-25 117.5 78 82.1
Ciclev10023145m.g Citrus clementina HOM05D007705 ORTHO05D009720 2.2e-22 108.6 80 70.0
Atru.chr5.465 Acer truncatum HOM05D007705 ORTHO05D009720 9.1e-21 103.2 79 67.1
Cpa.g.sc18.244 Carica papaya HOM05D007705 ORTHO05D009720 3.5e-20 101.3 74 68.9
Medtr8g031010 Medicago truncatula HOM05D007705 ORTHO05D009720 5.9e-20 100.5 81 64.2
PGR031G2440 Punica granatum HOM05D007705 ORTHO05D009720 1.3e-19 99.4 78 65.4
FvH4_7g14160 Fragaria vesca HOM05D007705 ORTHO05D009720 1.7e-19 99.0 79 64.6
FAN03G0317 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.7e-19 99.0 79 64.6
FAN06G1915 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.7e-19 99.0 79 64.6
FAN10G2029 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.7e-19 99.0 79 64.6
TWI14G1368 Tripterygium wilfordii HOM05D007705 ORTHO05D009720 2.3e-19 98.6 63 73.0
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.8e-19 97.8 78 62.8
Prupe.2G168000 Prunus persica HOM05D007705 ORTHO05D009720 3.8e-19 97.8 78 61.5
THA.LOC104801441 Tarenaya hassleriana HOM05D007705 ORTHO05D009720 6.6e-19 97.1 76 68.4
RcHm_v2.0_Chr1g0354811 Rosa chinensis HOM05D007705 ORTHO05D009720 8.6e-19 96.7 79 63.3
CANSAT56G1956 Cannabis sativa HOM05D007705 ORTHO05D009720 1.1e-18 96.3 80 63.8
arahy.Tifrunner.gnm1.ann1.SPA1YZ Arachis hypogaea HOM05D007705 ORTHO05D009720 1.5e-18 95.9 78 60.3
arahy.Tifrunner.gnm1.ann1.P4N769 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.9e-18 95.5 78 60.3
CiPaw.01G059800 Carya illinoinensis HOM05D007705 ORTHO05D009720 1.9e-18 95.5 79 62.0
Nn1g01504 Nelumbo nucifera HOM05D007705 ORTHO05D009720 1.9e-18 95.5 79 59.5
Carub.0006s3673 Capsella rubella HOM05D007705 ORTHO05D009720 2.5e-18 95.1 70 70.0
Eucgr.D02283 Eucalyptus grandis HOM05D007705 ORTHO05D009720 2.5e-18 95.1 63 69.8
Potri.014G082800 Populus trichocarpa HOM05D007705 ORTHO05D009720 2.5e-18 95.1 60 73.3
Glyma.03G010900 Glycine max HOM05D007705 ORTHO05D009720 3.3e-18 94.7 75 64.0
Manes.01G258400 Manihot esculenta HOM05D007705 ORTHO05D009720 3.3e-18 94.7 59 74.6
Cc02_g37860 Coffea canephora HOM05D007705 ORTHO05D009720 4.2e-18 94.4 79 63.3
CSS0048404 Camellia sinensis var. sinensis HOM05D007705 ORTHO05D009720 5.5e-18 94.0 59 76.3
Phvul.010G097400 Phaseolus vulgaris HOM05D007705 ORTHO05D009720 5.5e-18 94.0 78 60.3
RcHm_v2.0_Chr1g0355061 Rosa chinensis HOM05D007705 ORTHO05D009720 5.5e-18 94.0 79 62.0
Hund16929 Selenicereus undatus HOM05D007705 ORTHO05D009720 5.5e-18 94.0 79 59.5
TPR.G15966 Trifolium pratense HOM05D007705 ORTHO05D009720 5.5e-18 94.0 78 59.0
Aa31LG1G11090 Aethionema arabicum HOM05D007705 ORTHO05D009720 1.2e-17 92.8 77 61.0
Sc23g0003000 Simmondsia chinensis HOM05D007705 ORTHO05D009720 1.6e-17 92.4 79 57.0
MSTRG.28220 Avicennia marina HOM05D007705 ORTHO05D009720 2.1e-17 92.0 79 62.0
ClCG05G001590 Citrullus lanatus HOM05D007705 ORTHO05D009720 2.8e-17 91.7 79 59.5
Lalb_Chr17g0339761 Lupinus albus HOM05D007705 ORTHO05D009720 2.8e-17 91.7 78 56.4
Rhsim07G0016500 Rhododendron simsii HOM05D007705 ORTHO05D009720 2.8e-17 91.7 82 61.0
GSVIVG01026894001 Vitis vinifera HOM05D007705 ORTHO05D009720 2.8e-17 91.7 60 73.3
Glyma.18G231800 Glycine max HOM05D007705 ORTHO05D009720 3.6e-17 91.3 78 57.7
CARHR248690 Cardamine hirsuta HOM05D007705 ORTHO05D009720 4.7e-17 90.9 70 68.6
Thhalv10009285m.g Eutrema salsugineum HOM05D007705 ORTHO05D009720 4.7e-17 90.9 60 73.3
Peaxi162Scf00008g02124 Petunia axillaris HOM05D007705 ORTHO05D009720 4.7e-17 90.9 59 74.6
AL6G52940 Arabidopsis lyrata HOM05D007705 ORTHO05D009720 6.1e-17 90.5 70 67.1
AT4G00530 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 6.1e-17 90.5 60 71.7
CAN.G116.6 Capsicum annuum HOM05D007705 ORTHO05D009720 6.1e-17 90.5 69 66.7
MELO3C006116.2 Cucumis melo HOM05D007705 ORTHO05D009720 6.1e-17 90.5 72 59.7
CsaV3_3G008980 Cucumis sativus L. HOM05D007705 ORTHO05D009720 6.1e-17 90.5 72 59.7
Sed0019596 Sechium edule HOM05D007705 ORTHO05D009720 6.1e-17 90.5 79 55.7
A10p00310 Brassica napus HOM05D007705 ORTHO05D009720 1.0e-16 89.7 61 70.5
BraA10t42308Z Brassica rapa HOM05D007705 ORTHO05D009720 1.0e-16 89.7 61 70.5
C05p00320 Brassica napus HOM05D007705 ORTHO05D009720 1.4e-16 89.4 61 70.5
BolC5t28822H Brassica oleracea HOM05D007705 ORTHO05D009720 1.4e-16 89.4 61 70.5
CDE02G0341 Ceratophyllum demersum HOM05D007705 ORTHO05D009720 1.4e-16 89.4 69 62.3
Lsat_1_v5_gn_4_36241 Lactuca sativa HOM05D007705 ORTHO05D009720 1.4e-16 89.4 59 72.9
Sed0007089 Sechium edule HOM05D007705 ORTHO05D009720 1.4e-16 89.4 79 57.0
Ah.05g180700 Amaranthus hybridus HOM05D007705 ORTHO05D009720 2.3e-16 88.6 76 56.6
Aqoxy2G01039 Aquilegia oxysepala HOM05D007705 ORTHO05D009720 2.3e-16 88.6 79 58.2
CARHR000600 Cardamine hirsuta HOM05D007705 ORTHO05D009720 2.3e-16 88.6 61 68.9
BcaB03g13609 Brassica carinata HOM05D007705 ORTHO05D009720 3.0e-16 88.2 58 74.1
Sp1g00580 Schrenkiella parvula HOM05D007705 ORTHO05D009720 4.0e-16 87.8 60 71.7
PGSC0003DMG400010270 Solanum tuberosum HOM05D007705 ORTHO05D009720 5.2e-16 87.4 65 69.2
arahy.Tifrunner.gnm1.ann1.1PM303 Arachis hypogaea HOM05D007705 ORTHO05D009720 6.8e-16 87.0 77 55.8
HanXRQChr16g0522821 Helianthus annuus HOM05D007705 ORTHO05D009720 6.8e-16 87.0 78 56.4
Lj3g0020568 Lotus japonicus HOM05D007705 ORTHO05D009720 8.9e-16 86.7 78 55.1
arahy.Tifrunner.gnm1.ann1.ELVS11 Arachis hypogaea HOM05D007705 ORTHO05D009720 2.0e-15 85.5 79 54.4
AUR62004343 Chenopodium quinoa HOM05D007705 ORTHO05D009720 3.4e-15 84.7 73 56.2
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 4.4e-15 84.3 75 54.7
COL.COLO4_12699 Corchorus olitorius HOM05D007705 ORTHO05D009720 4.4e-15 84.3 150 41.3
arahy.Tifrunner.gnm1.ann1.5FJ7GX Arachis hypogaea HOM05D007705 ORTHO05D009720 5.7e-15 84.0 79 54.4
PSO478G4887 Papaver somniferum HOM05D007705 ORTHO05D009720 7.5e-15 83.6 60 63.3
SalBow5G0166 Salvia bowleyana HOM05D007705 ORTHO05D009720 7.5e-15 83.6 75 54.7
arahy.Tifrunner.gnm1.ann1.UQ99Y2 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.3e-14 82.8 79 55.7
AT1G01725 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 1.7e-14 82.4 61 63.9
Migut.N01439 Erythranthe guttata HOM05D007705 ORTHO05D009720 1.7e-14 82.4 85 50.6
FAN01G1472 Fragaria x ananassa HOM05D007705 ORTHO05D009720 4.9e-14 80.9 115 44.3
MD07G1139100 Malus domestica HOM05D007705 ORTHO05D009720 1.1e-13 79.7 79 54.4
Sabra14G0060000 Salix brachista HOM05D007705 ORTHO05D009720 1.1e-13 79.7 83 51.8
unitig_22.g6810 Utricularia gibba HOM05D007705 ORTHO05D009720 2.4e-13 78.6 78 52.6
ATR0680G396 Amborella trichopoda HOM05D007705 ORTHO05D009720 3.2e-13 78.2 64 59.4
SHI13438 Sapria himalayana HOM05D007705 ORTHO05D009720 7.0e-13 77.0 59 57.6
FAN06G1047 Fragaria x ananassa HOM05D007705 ORTHO05D009720 2.0e-12 75.5 109 45.0
RcHm_v2.0_Chr4g0404631 Rosa chinensis HOM05D007705 ORTHO05D009720 2.7e-12 75.1 77 53.2
Nitab4.5_0007064g0050 Nicotiana tabacum HOM05D007705 ORTHO05D009720 1.0e-11 73.2 39 84.6
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 2.9e-11 71.6 53 64.2
MBI18_g25521_MAGBIO Magnolia biondii HOM05D007705 ORTHO05D009720 3.9e-11 71.2 76 51.3
VMungo0331G1758 Vigna mungo HOM05D007705 ORTHO05D009720 8.6e-11 70.1 57 59.6
FAN28G2457 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.5e-10 69.3 48 68.8
Nitab4.5_0000386g0120 Nicotiana tabacum HOM05D007705 ORTHO05D009720 1.5e-10 69.3 39 82.1
Hma1.2p1_0001F.1_g001390 Hydrangea macrophylla HOM05D007705 ORTHO05D009720 3.6e-09 64.7 38 73.7
FAN10G1187 Fragaria x ananassa HOM05D007705 ORTHO05D009720 8.0e-09 63.5 79 46.8


User provided reference genes

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