Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.7e-82 308.5 149 100.0
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 5.9e-77 290.8 143 97.2
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.5e-75 286.2 138 97.8
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 1.0e-68 263.5 143 89.5
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 3.2e-67 258.5 143 86.0
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 4.7e-66 254.6 142 85.9
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 6.1e-66 254.2 143 86.0
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.7e-63 246.1 139 84.2
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.7e-63 246.1 139 84.2
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.1e-62 243.4 139 83.5
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 1.5e-59 233.0 139 75.5
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 1.9e-59 232.6 141 73.8
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.9e-59 232.6 139 75.5
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.9e-59 232.6 139 75.5
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.9e-59 232.6 141 73.8
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 5.6e-59 231.1 141 75.2
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 6.1e-58 227.6 141 72.3
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 1.0e-57 226.9 134 79.1
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 3.0e-57 225.3 138 74.6
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 5.2e-57 224.6 142 73.9
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 5.2e-57 224.6 134 79.1
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 1.2e-56 223.4 151 70.2
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 2.6e-56 222.2 139 71.2
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 5.7e-56 221.1 140 72.9
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 7.5e-56 220.7 133 75.9
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 9.8e-56 220.3 149 68.5
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.3e-55 219.9 139 73.4
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.7e-55 219.5 142 71.8
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.7e-55 219.5 142 71.8
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 1.7e-55 219.5 140 72.9
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 2.9e-55 218.8 140 70.7
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 2.9e-55 218.8 140 71.4
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 2.9e-55 218.8 149 68.5
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 3.7e-55 218.4 149 69.8
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 3.7e-55 218.4 139 72.7
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 4.9e-55 218.0 134 74.6
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 4.9e-55 218.0 132 71.2
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 8.3e-55 217.2 137 73.7
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 8.3e-55 217.2 137 73.7
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 1.4e-54 216.5 141 74.5
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 1.8e-54 216.1 141 69.5
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 2.4e-54 215.7 145 71.0
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 2.4e-54 215.7 145 71.0
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 3.2e-54 215.3 130 74.6
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 4.1e-54 214.9 141 69.5
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 4.1e-54 214.9 144 69.4
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 9.2e-54 213.8 127 74.8
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 9.2e-54 213.8 141 70.2
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 9.2e-54 213.8 141 70.2
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 1.2e-53 213.4 141 69.5
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.2e-53 213.4 127 74.8
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 1.2e-53 213.4 135 73.3
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 1.2e-53 213.4 137 72.3
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 3.5e-53 211.8 144 70.8
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 3.5e-53 211.8 134 72.4
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 4.6e-53 211.5 149 68.5
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 4.6e-53 211.5 139 70.5
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 4.6e-53 211.5 144 70.1
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 6.0e-53 211.1 139 70.5
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 6.0e-53 211.1 141 68.1
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 7.8e-53 210.7 131 75.6
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 1.0e-52 210.3 139 71.9
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 1.3e-52 209.9 139 71.2
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 1.3e-52 209.9 127 74.8
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 1.7e-52 209.5 140 72.1
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 1.7e-52 209.5 135 71.1
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 3.0e-52 208.8 131 73.3
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 3.9e-52 208.4 137 67.2
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 3.9e-52 208.4 139 71.2
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 6.6e-52 207.6 142 68.3
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 8.6e-52 207.2 141 66.7
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 8.6e-52 207.2 141 66.7
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 8.6e-52 207.2 141 66.7
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 8.6e-52 207.2 141 66.7
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 8.6e-52 207.2 130 73.1
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 1.1e-51 206.8 130 70.0
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 1.1e-51 206.8 140 67.1
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 1.9e-51 206.1 126 71.4
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 1.9e-51 206.1 131 71.8
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 1.9e-51 206.1 146 67.1
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 2.5e-51 205.7 114 81.6
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 2.5e-51 205.7 125 73.6
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 3.3e-51 205.3 134 67.9
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 4.3e-51 204.9 126 74.6
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 4.3e-51 204.9 132 70.5
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 7.3e-51 204.1 131 70.2
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 9.5e-51 203.8 130 69.2
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.2e-50 203.4 131 71.8
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 2.1e-50 202.6 138 65.9
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 2.8e-50 202.2 141 65.2
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 3.6e-50 201.8 114 82.5
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 3.6e-50 201.8 131 69.5
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 4.7e-50 201.4 131 67.9
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 8.0e-50 200.7 139 66.9
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 8.0e-50 200.7 132 71.2
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 1.4e-49 199.9 143 66.4
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.3e-49 199.1 131 67.9
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 2.3e-49 199.1 150 65.3
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 3.1e-49 198.7 147 63.9
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 3.1e-49 198.7 145 64.8
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 3.1e-49 198.7 141 63.1
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 5.2e-49 198.0 125 68.8
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 6.8e-49 197.6 143 65.0
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 1.2e-48 196.8 134 68.7
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 2.0e-48 196.1 114 78.9
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 2.0e-48 196.1 127 66.9
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 3.4e-48 195.3 141 66.7
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 4.4e-48 194.9 126 70.6
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 4.4e-48 194.9 127 68.5
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 9.8e-48 193.7 135 66.7
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 9.8e-48 193.7 130 66.2
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 1.3e-47 193.4 131 65.6
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 2.2e-47 192.6 140 63.6
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 2.9e-47 192.2 130 65.4
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.7e-47 191.8 127 64.6
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 4.9e-47 191.4 131 71.0
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 4.9e-47 191.4 127 66.9
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 4.9e-47 191.4 161 59.6
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 8.3e-47 190.7 132 65.9
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 1.4e-46 189.9 125 66.4
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 2.4e-46 189.1 127 66.9
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 7.0e-46 187.6 129 67.4
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 7.0e-46 187.6 132 71.2
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 2.0e-45 186.0 123 68.3
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 2.0e-45 186.0 126 71.4
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 3.5e-45 185.3 127 68.5
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 4.6e-45 184.9 127 68.5
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 6.0e-45 184.5 123 69.9
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 7.8e-45 184.1 122 69.7
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 7.8e-45 184.1 122 69.7
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 5.0e-44 181.4 113 69.9
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 5.0e-44 181.4 127 63.0
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 6.6e-44 181.0 110 77.3
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 8.6e-44 180.6 127 67.7
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 7.3e-43 177.6 114 70.2
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.6e-42 176.4 139 61.9
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 2.8e-42 175.6 126 61.1
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 3.6e-42 175.3 94 86.2
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 8.1e-42 174.1 221 43.9
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.1e-41 173.7 114 66.7
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.8e-41 172.9 114 67.5
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 3.1e-41 172.2 113 69.9
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 5.2e-41 171.4 131 63.4
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 1.5e-40 169.9 122 66.4
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 1.1e-38 163.7 114 66.7
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.0e-36 157.1 141 54.6
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.0e-36 157.1 141 54.6
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 3.0e-36 155.6 141 53.9
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 2.4e-30 136.0 122 50.0
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 7.8e-29 131.0 116 55.2
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 9.6e-27 124.0 130 45.4
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 4.9e-23 111.7 61 78.7
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 1.0e-20 104.0 77 64.9
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 3.0e-20 102.4 85 57.6
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 1.1e-14 84.0 61 59.0
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.9e-14 83.2 67 55.2
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 1.0e-12 77.4 152 30.9
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 1.1e-11 73.9 48 60.4


User provided reference genes

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