Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 2.8e-76 288.5 140 100.0
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 2.6e-74 282.0 140 98.6
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 2.9e-73 278.5 140 97.1
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 2.0e-71 272.3 140 93.6
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 3.5e-71 271.6 140 93.6
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 1.7e-70 269.2 140 93.6
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 7.0e-64 247.3 142 83.8
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 1.2e-63 246.5 142 82.4
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 1.6e-63 246.1 142 81.0
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 1.7e-62 242.7 142 80.3
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 2.3e-62 242.3 142 81.0
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 2.3e-62 242.3 142 82.4
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 8.6e-62 240.4 142 80.3
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 1.1e-61 240.0 141 80.1
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 1.9e-61 239.2 140 80.7
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 1.9e-61 239.2 142 80.3
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 2.5e-61 238.8 142 79.6
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 2.5e-61 238.8 140 82.9
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 5.6e-61 237.7 142 78.9
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 5.6e-61 237.7 142 78.9
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 9.5e-61 236.9 142 81.0
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 1.2e-60 236.5 142 79.6
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 1.6e-60 236.1 142 81.0
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 2.1e-60 235.7 141 79.4
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 2.8e-60 235.3 142 79.6
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 2.8e-60 235.3 142 78.2
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 3.6e-60 235.0 142 77.5
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 3.6e-60 235.0 142 80.3
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 4.7e-60 234.6 142 78.2
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 6.2e-60 234.2 142 80.3
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 1.4e-59 233.0 142 78.9
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 1.4e-59 233.0 142 77.5
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 3.1e-59 231.9 142 76.1
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 4.0e-59 231.5 142 75.4
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 8.9e-59 230.3 142 77.5
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 1.2e-58 229.9 142 77.5
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 2.6e-58 228.8 141 78.7
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 7.5e-58 227.3 141 78.0
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 7.5e-58 227.3 142 75.4
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 7.5e-58 227.3 142 76.8
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 9.8e-58 226.9 139 78.4
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.3e-57 226.5 142 75.4
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.3e-57 226.5 142 75.4
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.3e-57 226.5 142 76.1
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 1.7e-57 226.1 142 74.6
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 1.7e-57 226.1 142 74.6
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 1.7e-57 226.1 142 74.6
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 1.7e-57 226.1 142 74.6
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 1.7e-57 226.1 142 74.6
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 1.7e-57 226.1 142 74.6
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 2.2e-57 225.7 142 74.6
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 2.2e-57 225.7 142 74.6
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 2.9e-57 225.3 142 74.6
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 2.9e-57 225.3 142 74.6
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.9e-57 225.3 142 73.9
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 3.7e-57 224.9 142 76.8
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 8.3e-57 223.8 142 73.9
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 8.3e-57 223.8 142 73.9
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 1.1e-56 223.4 141 75.2
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 1.9e-56 222.6 141 75.2
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 2.4e-56 222.2 142 73.2
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 3.2e-56 221.9 142 73.9
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 3.2e-56 221.9 142 73.9
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 3.2e-56 221.9 142 76.1
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 3.2e-56 221.9 143 76.2
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 3.2e-56 221.9 142 71.8
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 4.1e-56 221.5 141 75.2
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 4.1e-56 221.5 142 72.5
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 5.4e-56 221.1 142 72.5
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 9.2e-56 220.3 140 72.1
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 9.2e-56 220.3 140 72.1
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 9.2e-56 220.3 142 71.8
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 1.2e-55 219.9 142 72.5
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 1.6e-55 219.5 142 73.9
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 2.1e-55 219.2 142 71.8
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 2.1e-55 219.2 142 71.8
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 2.1e-55 219.2 140 72.1
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 2.7e-55 218.8 138 73.9
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 2.7e-55 218.8 141 75.2
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 2.7e-55 218.8 142 73.9
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 3.5e-55 218.4 142 71.8
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 3.5e-55 218.4 142 71.8
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 3.5e-55 218.4 142 71.8
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 3.5e-55 218.4 138 73.9
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 7.8e-55 217.2 142 71.8
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 1.0e-54 216.9 193 60.1
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 1.0e-54 216.9 193 60.1
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 1.7e-54 216.1 139 76.3
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 1.7e-54 216.1 142 71.1
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 1.7e-54 216.1 142 71.1
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.7e-54 216.1 141 75.2
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.7e-54 216.1 141 75.2
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 2.3e-54 215.7 141 75.2
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 3.0e-54 215.3 140 70.7
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 3.9e-54 214.9 145 71.0
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 8.6e-54 213.8 142 71.8
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 3.3e-53 211.8 136 71.3
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 5.6e-53 211.1 138 73.9
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 5.6e-53 211.1 138 74.6
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 7.3e-53 210.7 142 69.7
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 2.8e-52 208.8 142 68.3
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 8.1e-52 207.2 170 62.4
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 1.1e-51 206.8 141 70.2
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 1.1e-51 206.8 163 64.4
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.4e-51 206.5 134 75.4
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 1.8e-51 206.1 142 69.7
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 8.9e-51 203.8 191 56.0
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 8.9e-51 203.8 140 71.4
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 1.2e-50 203.4 142 66.9
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 1.5e-50 203.0 142 69.7
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.5e-50 203.0 140 70.7
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 2.6e-50 202.2 142 69.0
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 2.6e-50 202.2 141 68.8
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 3.4e-50 201.8 140 70.7
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 4.4e-50 201.4 141 71.6
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 9.9e-50 200.3 141 69.5
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.7e-49 199.5 142 68.3
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 2.9e-49 198.7 138 68.8
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 3.8e-49 198.4 142 67.6
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 3.8e-49 198.4 143 68.5
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 3.8e-49 198.4 138 68.8
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 4.9e-49 198.0 140 70.7
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 6.4e-49 197.6 141 68.8
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 6.4e-49 197.6 140 70.7
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.9e-48 196.1 135 70.4
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 3.2e-48 195.3 137 68.6
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 4.1e-48 194.9 142 70.4
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 7.1e-48 194.1 117 79.5
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 7.1e-48 194.1 140 70.0
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 2.7e-47 192.2 142 65.5
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 4.6e-47 191.4 132 69.7
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 1.0e-46 190.3 139 69.1
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 2.3e-46 189.1 142 64.8
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 3.9e-46 188.3 142 66.9
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 3.9e-46 188.3 132 68.2
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 1.5e-45 186.4 140 65.0
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 1.9e-45 186.0 157 59.9
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 8.1e-44 180.6 175 55.4
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 6.9e-43 177.6 142 60.6
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 9.9e-42 173.7 143 62.9
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 1.3e-41 173.3 138 62.3
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 3.8e-41 171.8 108 76.9
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 3.9e-38 161.8 141 58.2
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.1e-35 153.7 138 57.2
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 2.4e-35 152.5 136 55.1
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 3.1e-35 152.1 136 54.4
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 6.9e-35 151.0 126 61.1
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 9.0e-35 150.6 141 56.7
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 9.9e-34 147.1 142 52.8
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 1.3e-33 146.7 289 35.3
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 2.2e-33 146.0 140 52.1
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 7.1e-32 141.0 141 51.8
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 9.3e-32 140.6 141 51.8
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 1.3e-28 130.2 124 50.0
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 1.5e-26 123.2 126 49.2
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 2.6e-26 122.5 80 70.0
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 2.6e-26 122.5 82 69.5
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 7.9e-23 110.9 73 71.2
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 9.6e-21 104.0 67 70.1
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 2.4e-19 99.4 120 47.5
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 3.1e-19 99.0 77 63.6
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 9.0e-19 97.4 109 50.5
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 9.0e-19 97.4 109 50.5
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 9.0e-19 97.4 109 50.5
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 1.7e-17 93.2 77 55.8
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 2.2e-17 92.8 115 48.7
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 2.9e-17 92.4 87 55.2
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 3.8e-17 92.0 68 64.7
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 1.9e-16 89.7 59 67.8
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 3.2e-16 89.0 68 63.2
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 4.2e-16 88.6 117 40.2
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 6.0e-15 84.7 112 48.2
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 3.9e-14 82.0 59 67.8
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 3.9e-14 82.0 59 67.8
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 6.7e-14 81.3 46 84.8
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 7.4e-13 77.8 39 94.9
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 9.6e-13 77.4 42 85.7
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 8.2e-12 74.3 115 44.3
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 4.5e-10 68.6 34 91.2
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 1.0e-09 67.4 34 88.2
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 1.0e-09 67.4 40 67.5
Gohir.D08G113616 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.3e-09 67.0 47 72.3
Gorai.003G095200 Gossypium raimondii HOM05D003749 ORTHO05D004421 2.9e-09 65.9 38 81.6
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 9.3e-08 60.8 105 35.2
CARHR257530 Cardamine hirsuta HOM05D000389 ORTHO05D012814 6.7e-06 54.7 39 61.5


User provided reference genes

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