Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.9e-110 402.5 207 100.0
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 1.2e-99 366.7 209 92.3
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 2.6e-99 365.5 209 92.3
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 1.5e-86 323.2 207 81.6
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 2.2e-82 309.3 208 77.9
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 2.0e-78 296.2 207 73.9
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 7.4e-78 294.3 208 74.0
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 4.8e-77 291.6 207 73.4
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 1.2e-75 287.0 207 72.9
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 2.6e-75 285.8 207 72.5
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 3.4e-75 285.4 207 71.0
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 3.4e-75 285.4 188 75.5
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 1.0e-74 283.9 190 76.3
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 1.7e-74 283.1 189 75.7
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 2.9e-74 282.3 207 70.5
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 1.1e-73 280.4 207 72.0
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.4e-73 280.0 190 75.3
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 1.9e-73 279.6 190 73.7
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 2.5e-73 279.3 188 76.1
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 7.2e-73 277.7 190 75.3
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 9.4e-73 277.3 190 74.2
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 9.4e-73 277.3 189 74.6
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 1.6e-72 276.6 190 74.7
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 2.1e-72 276.2 214 70.6
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 6.1e-72 274.6 192 73.4
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 8.0e-72 274.2 192 73.4
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 1.0e-71 273.9 187 73.8
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 1.4e-71 273.5 190 71.6
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 1.8e-71 273.1 207 66.7
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 3.9e-71 271.9 209 66.5
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 6.7e-71 271.2 190 73.7
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 1.5e-70 270.0 209 66.5
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 2.0e-70 269.6 211 65.9
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 5.7e-70 268.1 207 64.7
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 9.7e-70 267.3 202 67.8
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 1.3e-69 266.9 209 68.4
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 1.3e-69 266.9 190 68.9
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 2.8e-69 265.8 203 70.4
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 3.7e-69 265.4 202 67.3
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 4.8e-69 265.0 164 86.6
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 6.3e-69 264.6 290 54.5
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 1.1e-68 263.8 207 66.7
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 1.1e-68 263.8 189 66.7
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 2.4e-68 262.7 190 67.9
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 5.3e-68 261.5 205 66.3
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 1.6e-67 260.0 173 80.9
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 2.6e-67 259.2 188 70.2
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 2.6e-67 259.2 244 60.2
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 1.3e-66 256.9 188 67.6
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 2.9e-66 255.8 190 73.2
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 5.0e-66 255.0 220 62.7
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 6.5e-66 254.6 190 66.8
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 8.5e-66 254.2 190 68.4
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 1.1e-65 253.8 190 67.9
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 1.5e-65 253.4 190 65.8
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 9.4e-65 250.8 187 67.4
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 4.7e-64 248.4 207 60.9
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 6.1e-64 248.1 190 66.3
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 8.0e-64 247.7 190 65.8
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 1.0e-63 247.3 207 64.3
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 1.4e-63 246.9 190 67.9
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 1.4e-63 246.9 234 59.0
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 1.8e-63 246.5 163 74.8
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 2.3e-63 246.1 190 66.3
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 6.7e-63 244.6 187 67.9
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 6.7e-63 244.6 187 67.9
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 8.8e-63 244.2 187 67.4
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 1.5e-62 243.4 190 66.3
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 1.5e-62 243.4 219 62.1
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 2.0e-62 243.0 187 67.4
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 2.0e-62 243.0 187 67.4
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 2.6e-62 242.7 189 66.1
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 2.6e-62 242.7 187 67.4
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 3.3e-62 242.3 190 65.8
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 4.4e-62 241.9 212 60.4
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 4.4e-62 241.9 190 64.7
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 7.5e-62 241.1 207 62.8
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 7.5e-62 241.1 189 62.4
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 9.7e-62 240.7 190 65.3
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 1.3e-61 240.4 208 62.5
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 1.7e-61 240.0 207 62.8
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 1.7e-61 240.0 190 63.2
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 2.8e-61 239.2 197 62.9
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 3.7e-61 238.8 207 61.8
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.1e-60 235.3 145 77.2
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 5.3e-60 235.0 192 61.5
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 1.2e-59 233.8 211 58.3
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 4.5e-59 231.9 207 58.5
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 2.5e-57 226.1 190 58.4
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 3.2e-57 225.7 207 57.5
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 3.2e-57 225.7 196 60.7
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 6.1e-56 221.5 220 56.4
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 8.0e-56 221.1 212 57.5
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 8.8e-55 217.6 207 58.0
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 2.0e-54 216.5 292 46.9
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 8.3e-53 211.1 143 72.0
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 8.3e-53 211.1 188 60.1
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 1.4e-52 210.3 208 59.1
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 1.2e-51 207.2 183 57.4
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 3.5e-51 205.7 158 69.6
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 1.7e-50 203.4 333 41.4
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 3.3e-49 199.1 186 56.5
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 2.7e-43 179.5 114 74.6
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 9.5e-41 171.0 124 73.4
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 5.2e-39 165.2 191 46.6
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 2.6e-38 162.9 203 46.3
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 5.8e-38 161.8 189 43.9
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 9.8e-38 161.0 190 50.0
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 2.9e-37 159.5 190 46.3
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 2.0e-35 153.3 119 66.4
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 3.5e-35 152.5 104 71.2
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 1.3e-34 150.6 147 52.4
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 8.6e-34 147.9 258 38.8
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 5.8e-30 135.2 210 45.7
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 1.3e-29 134.0 108 64.8
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 1.9e-28 130.2 136 55.9
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 3.2e-28 129.4 89 70.8
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 6.6e-26 121.7 122 55.7
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 2.2e-21 106.7 94 60.6
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 2.4e-20 103.2 76 69.7
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 5.6e-17 92.0 83 54.2
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 1.4e-15 87.4 56 78.6
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.4e-15 87.4 89 52.8
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.8e-15 87.0 89 50.6
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 2.4e-15 86.7 59 74.6
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 2.4e-15 86.7 90 51.1
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 6.8e-15 85.1 188 32.4
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.2e-14 84.3 89 50.6
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 2.0e-14 83.6 150 32.0
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 2.1e-11 73.6 211 30.3
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 3.5e-11 72.8 56 64.3
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.9e-10 69.3 86 51.2
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.1e-09 67.8 52 61.5
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 5.6e-09 65.5 48 62.5
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 5.6e-09 65.5 48 62.5
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 5.6e-09 65.5 48 62.5
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.6e-08 63.9 49 65.3
SGA_v2.0_scaffold25G11073 Striga asiatica HOM05D005686 ORTHO05D006798 2.1e-08 63.5 108 38.9


User provided reference genes

Program Settings