Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.0e-196 689.9 355 100.0
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 1.0e-196 689.9 355 100.0
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 3.0e-196 688.3 355 99.7
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 2.6e-171 605.5 355 87.9
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 2.3e-167 592.4 349 87.7
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 5.6e-166 587.8 344 87.8
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 7.0e-161 570.9 355 83.1
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 4.7e-157 558.1 316 89.9
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 6.2e-157 557.8 350 82.6
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 1.5e-155 553.1 350 80.9
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 9.9e-155 550.4 372 75.8
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 2.9e-154 548.9 332 83.1
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 8.3e-154 547.4 356 79.8
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 4.1e-153 545.0 336 81.8
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 1.2e-152 543.5 336 83.3
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 2.7e-152 542.3 337 81.3
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 4.6e-152 541.6 342 81.0
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 1.7e-151 539.7 354 78.5
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 1.7e-151 539.7 350 77.7
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 1.1e-150 537.0 355 78.6
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 2.5e-150 535.8 354 78.2
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 3.3e-150 535.4 357 78.7
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 3.3e-150 535.4 357 77.6
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 5.6e-150 534.6 351 78.3
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 5.6e-150 534.6 350 78.3
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 7.3e-150 534.3 357 78.7
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 9.5e-150 533.9 341 79.2
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.2e-149 533.5 357 77.3
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 2.1e-149 532.7 356 77.5
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 6.2e-149 531.2 339 80.5
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 8.1e-149 530.8 362 75.7
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.2e-147 526.9 380 73.4
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 1.5e-147 526.6 357 77.9
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 4.4e-147 525.0 317 84.2
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 5.8e-147 524.6 357 76.5
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 1.3e-146 523.5 362 75.7
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 2.2e-146 522.7 351 77.2
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 6.4e-146 521.2 346 75.4
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 1.1e-145 520.4 349 75.9
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 4.2e-145 518.5 369 74.5
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 5.4e-145 518.1 356 77.8
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 5.4e-145 518.1 355 75.5
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 7.1e-145 517.7 350 76.9
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 9.2e-145 517.3 334 80.2
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 1.6e-144 516.5 331 80.1
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 3.5e-144 515.4 357 75.9
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 6.0e-144 514.6 340 77.9
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 1.0e-143 513.8 343 78.7
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 5.1e-143 511.5 350 77.4
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 5.1e-143 511.5 351 76.4
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 6.6e-143 511.1 333 77.8
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 6.6e-143 511.1 356 76.7
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 1.1e-142 510.4 342 76.3
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 2.5e-142 509.2 356 77.0
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 5.6e-142 508.1 327 75.8
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 9.6e-142 507.3 348 75.3
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 2.8e-141 505.8 355 73.5
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 4.7e-141 505.0 340 76.8
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 1.1e-140 503.8 326 78.5
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 1.8e-140 503.1 363 74.4
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 2.4e-140 502.7 319 77.7
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 5.3e-140 501.5 322 79.8
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 1.5e-139 500.0 347 73.2
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.5e-139 500.0 347 74.4
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 2.6e-139 499.2 362 74.3
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 4.4e-139 498.4 347 75.8
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 9.9e-139 497.3 355 73.8
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 9.9e-139 497.3 351 74.1
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 1.3e-138 496.9 330 74.8
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 1.7e-138 496.5 346 74.6
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 2.9e-138 495.7 354 74.0
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 1.1e-137 493.8 322 75.8
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 2.4e-137 492.7 357 72.0
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 1.6e-136 490.0 292 84.9
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 7.8e-136 487.6 349 72.5
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 1.0e-135 487.3 355 72.7
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 3.9e-135 485.3 347 73.2
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 3.9e-135 485.3 467 60.4
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 6.6e-135 484.6 359 71.6
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 6.6e-135 484.6 324 74.7
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 1.9e-134 483.0 358 70.4
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 2.5e-134 482.6 344 70.9
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 5.6e-134 481.5 322 77.6
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 5.6e-134 481.5 343 70.6
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 2.1e-133 479.6 372 69.9
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 1.1e-132 477.2 337 71.8
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 4.0e-132 475.3 350 72.9
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 4.0e-132 475.3 331 73.7
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 5.3e-132 474.9 354 70.9
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 2.0e-131 473.0 344 70.9
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 2.0e-131 473.0 310 76.1
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 5.8e-131 471.5 354 71.2
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 1.3e-130 470.3 354 70.9
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 1.1e-129 467.2 311 75.2
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 1.1e-129 467.2 348 71.8
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 1.2e-128 463.8 334 71.3
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.6e-128 463.4 350 71.1
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 1.3e-127 460.3 350 68.0
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 1.8e-127 459.9 352 67.9
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 3.9e-127 458.8 337 70.3
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 3.9e-127 458.8 350 67.4
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 5.1e-127 458.4 329 72.6
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 8.7e-127 457.6 298 76.5
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 2.5e-126 456.1 353 66.3
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 4.3e-126 455.3 355 67.6
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 1.3e-125 453.8 353 65.7
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 3.7e-125 452.2 344 68.6
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 3.7e-125 452.2 344 68.3
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 6.2e-125 451.4 352 67.3
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 6.2e-125 451.4 352 67.3
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 4.0e-124 448.7 344 68.0
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 5.3e-124 448.4 348 67.0
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 5.3e-124 448.4 362 63.0
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 9.0e-124 447.6 359 65.7
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 9.0e-124 447.6 355 67.9
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 2.0e-123 446.4 353 66.0
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 2.6e-123 446.0 347 67.4
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 2.2e-122 443.0 355 65.4
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 3.8e-122 442.2 321 71.3
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 4.9e-122 441.8 341 64.8
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 1.1e-121 440.7 344 67.4
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 1.9e-121 439.9 314 72.9
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 7.9e-120 434.5 333 67.6
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 2.3e-119 433.0 366 63.7
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 1.5e-118 430.3 355 63.9
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 3.3e-118 429.1 355 63.9
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 3.3e-118 429.1 355 63.9
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 1.6e-117 426.8 355 63.7
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 3.7e-117 425.6 277 79.1
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 5.3e-116 421.8 357 63.6
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 4.5e-115 418.7 305 66.6
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 2.4e-108 396.4 320 64.4
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 9.0e-108 394.4 343 61.8
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 2.3e-103 379.8 266 71.8
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 3.7e-101 372.5 322 63.4
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 1.0e-98 364.4 309 64.4
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 7.2e-97 358.2 287 69.0
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 6.1e-96 355.1 264 68.6
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 5.9e-91 338.6 217 80.6
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 6.5e-90 335.1 320 55.0
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 1.5e-89 334.0 331 52.6
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 9.4e-89 331.3 323 56.0
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 1.3e-85 320.9 273 58.2
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 7.0e-84 315.1 315 52.7
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 5.0e-82 308.9 217 72.8
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 5.0e-82 308.9 207 74.4
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.5e-81 307.4 213 74.2
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 7.2e-81 305.1 203 76.8
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 6.1e-80 302.0 209 75.6
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 6.3e-77 292.0 217 71.0
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 3.0e-71 273.1 275 55.6
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 5.9e-67 258.8 285 47.7
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 2.9e-53 213.4 154 73.4
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 5.4e-52 209.1 138 77.5
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 2.8e-48 196.8 132 73.5
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 2.3e-47 193.7 141 72.3
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 1.2e-43 181.4 133 68.4
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 6.8e-39 165.6 89 87.6
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 3.3e-33 146.7 108 71.3
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 7.3e-25 119.0 92 62.0
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 4.0e-23 113.2 270 28.5
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 6.0e-19 99.4 299 25.4
BcaB01g01266 Brassica carinata HOM05D000313 ORTHO05D000065 7.6e-06 55.8 38 71.1


User provided reference genes

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