Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.5e-101 372.9 187 100.0
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 6.5e-97 357.5 187 95.7
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 6.5e-97 357.5 187 95.7
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 7.6e-90 334.0 186 88.7
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 2.2e-89 332.4 186 87.6
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 2.2e-89 332.4 186 87.6
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 9.3e-88 327.0 186 88.2
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 9.7e-85 317.0 186 85.5
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 5.3e-83 311.2 183 85.8
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 4.8e-76 288.1 184 77.2
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 3.1e-75 285.4 184 76.6
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 2.6e-74 282.3 184 75.5
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 4.5e-74 281.6 181 77.3
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 5.9e-74 281.2 180 75.0
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 6.5e-73 277.7 184 77.7
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 1.4e-72 276.6 184 74.5
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 1.4e-72 276.6 186 73.1
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 1.9e-72 276.2 181 72.9
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 1.9e-72 276.2 172 78.5
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 3.6e-71 271.9 181 71.8
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 4.7e-71 271.6 189 73.5
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 1.0e-70 270.4 184 72.3
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 1.8e-70 269.6 182 74.7
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 5.1e-70 268.1 177 71.8
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 1.1e-69 266.9 187 70.6
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 1.5e-69 266.5 180 72.2
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 3.3e-69 265.4 184 71.7
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 7.4e-69 264.2 186 69.9
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 7.4e-69 264.2 186 69.9
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 1.3e-68 263.5 180 71.7
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 2.2e-68 262.7 188 69.7
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 3.7e-68 261.9 182 72.0
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 3.7e-68 261.9 183 71.6
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 3.7e-68 261.9 184 71.7
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 8.2e-68 260.8 171 75.4
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 1.8e-67 259.6 183 68.3
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 2.4e-67 259.2 187 69.5
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 3.1e-67 258.8 187 67.4
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 3.1e-67 258.8 171 74.9
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 7.0e-67 257.7 187 68.4
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 7.0e-67 257.7 171 71.3
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 7.0e-67 257.7 184 69.6
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 9.1e-67 257.3 187 67.9
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 1.2e-66 256.9 185 70.3
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 1.2e-66 256.9 181 68.0
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 1.2e-66 256.9 187 66.8
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 1.5e-66 256.5 182 71.4
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 2.0e-66 256.1 187 67.4
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 2.6e-66 255.8 187 66.8
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 3.5e-66 255.4 183 66.7
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 3.5e-66 255.4 187 66.8
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 3.5e-66 255.4 183 67.8
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 4.5e-66 255.0 187 65.8
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 5.9e-66 254.6 187 67.9
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 7.7e-66 254.2 195 69.2
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 7.7e-66 254.2 179 69.3
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 1.0e-65 253.8 187 66.3
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 1.3e-65 253.4 186 66.1
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 1.3e-65 253.4 182 68.1
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 1.7e-65 253.1 168 73.2
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 1.7e-65 253.1 183 66.7
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 1.7e-65 253.1 185 67.0
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 1.7e-65 253.1 183 66.7
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 1.7e-65 253.1 187 67.4
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 2.2e-65 252.7 183 67.2
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 2.9e-65 252.3 179 69.8
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 3.8e-65 251.9 195 68.2
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 3.8e-65 251.9 183 69.4
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 5.0e-65 251.5 192 65.6
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 8.5e-65 250.8 183 64.5
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 1.5e-64 250.0 181 67.4
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 1.9e-64 249.6 187 64.7
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 1.9e-64 249.6 180 69.4
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 2.5e-64 249.2 181 68.0
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 5.5e-64 248.1 161 73.9
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 9.4e-64 247.3 179 69.8
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 1.6e-63 246.5 178 68.5
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 2.1e-63 246.1 183 66.7
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 4.7e-63 245.0 191 66.0
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 8.0e-63 244.2 183 65.6
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 8.0e-63 244.2 183 65.6
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 8.0e-63 244.2 183 65.6
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 8.0e-63 244.2 192 63.5
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 1.0e-62 243.8 174 69.5
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 1.8e-62 243.0 183 65.6
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 1.8e-62 243.0 174 69.0
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 4.0e-62 241.9 152 73.7
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 5.2e-62 241.5 183 64.5
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 5.2e-62 241.5 182 64.8
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 1.1e-61 240.4 180 67.8
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 1.1e-61 240.4 180 66.7
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 2.8e-60 235.7 181 67.4
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 1.1e-59 233.8 164 69.5
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 4.1e-59 231.9 164 68.9
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 5.3e-59 231.5 188 62.2
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 7.0e-59 231.1 182 63.7
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 3.5e-58 228.8 171 65.5
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 1.3e-57 226.9 162 68.5
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 2.2e-57 226.1 172 65.1
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 5.0e-57 224.9 187 60.4
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 8.5e-57 224.2 171 64.3
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 7.2e-56 221.1 122 90.2
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 2.7e-55 219.2 186 61.8
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 3.6e-55 218.8 123 90.2
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 1.4e-54 216.9 170 64.7
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 1.7e-52 209.9 157 65.0
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 3.5e-50 202.2 150 64.7
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 3.8e-49 198.7 147 65.3
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 1.9e-48 196.4 176 57.4
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 3.2e-48 195.7 122 73.8
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 2.7e-47 192.6 122 76.2
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 4.7e-47 191.8 160 60.6
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 2.3e-46 189.5 149 63.1
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 1.2e-45 187.2 185 54.6
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 5.7e-45 184.9 150 60.7
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 1.3e-44 183.7 146 59.6
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 1.7e-44 183.3 186 57.0
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 1.6e-42 176.8 186 53.2
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 4.5e-42 175.3 149 59.1
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 7.5e-37 157.9 108 69.4
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 2.0e-34 149.8 131 51.1
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 2.5e-32 142.9 186 46.2
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 2.5e-32 142.9 186 46.2
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 6.2e-31 138.3 126 53.2
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 1.0e-30 137.5 84 81.0
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 2.3e-30 136.3 138 49.3
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 2.3e-30 136.3 92 69.6
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 5.0e-25 118.6 146 44.5
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 3.3e-24 115.9 157 42.0
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 1.3e-20 104.0 81 64.2
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 4.1e-19 99.0 146 39.7
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 4.1e-19 99.0 146 39.7
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 1.7e-17 93.6 59 72.9
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.7e-17 93.6 56 73.2
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 3.9e-17 92.4 114 40.4
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 3.0e-09 66.2 55 58.2


User provided reference genes

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