Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 9.5e-295 1016.1 531 100.0
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 3.2e-290 1001.1 531 98.5
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 4.6e-289 997.3 531 97.9
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 5.1e-232 807.7 534 81.6
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 2.6e-215 752.3 536 76.9
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 7.4e-215 750.7 535 76.4
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 1.8e-208 729.6 537 76.0
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 4.1e-157 558.9 551 58.8
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 2.5e-154 549.7 547 58.9
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 6.8e-152 541.6 540 60.0
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 2.7e-148 529.6 544 59.2
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 3.5e-148 529.3 546 59.5
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 8.7e-147 524.6 552 56.5
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 1.5e-146 523.9 551 57.4
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 1.1e-144 517.7 549 56.8
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.4e-144 516.5 559 56.9
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 9.0e-144 514.6 560 57.1
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 9.9e-143 511.1 555 56.2
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 6.0e-140 501.9 555 56.6
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 6.0e-140 501.9 541 57.1
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 2.5e-138 496.5 554 55.4
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 2.5e-138 496.5 542 56.5
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 3.3e-138 496.1 543 57.1
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 1.6e-137 493.8 543 55.2
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 1.6e-137 493.8 552 54.3
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 2.8e-137 493.0 570 54.4
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 4.8e-137 492.3 543 54.1
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 1.4e-136 490.7 551 54.8
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 1.8e-136 490.3 546 54.2
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 2.4e-136 490.0 539 55.5
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 1.5e-135 487.3 548 56.0
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 1.5e-135 487.3 552 54.5
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 5.8e-135 485.3 546 53.8
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 5.8e-135 485.3 539 54.9
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 9.3e-133 478.0 548 53.3
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 1.2e-132 477.6 549 54.3
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 2.7e-132 476.5 555 54.1
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 3.5e-132 476.1 551 54.1
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 4.6e-132 475.7 535 55.9
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 4.6e-132 475.7 541 53.8
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 1.3e-131 474.2 546 56.0
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 3.7e-129 466.1 541 52.7
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 5.3e-128 462.2 558 52.3
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 5.8e-127 458.8 597 49.7
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 4.9e-126 455.7 574 50.3
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 1.1e-125 454.5 567 51.3
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 2.5e-125 453.4 550 52.5
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 3.2e-125 453.0 542 50.9
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 3.5e-124 449.5 549 51.0
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 4.6e-124 449.1 530 53.4
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 9.6e-122 441.4 558 51.4
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 1.6e-121 440.7 541 51.2
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 2.1e-121 440.3 539 50.5
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 3.7e-121 439.5 509 53.4
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 6.3e-121 438.7 543 51.4
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 1.8e-120 437.2 547 50.8
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 3.1e-120 436.4 539 52.9
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 7.6e-119 431.8 560 50.0
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 2.2e-118 430.3 554 50.0
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 8.5e-118 428.3 539 52.1
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 3.2e-117 426.4 550 51.3
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 3.2e-117 426.4 540 51.9
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 7.2e-117 425.2 634 45.7
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 4.6e-116 422.5 539 49.4
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.9e-114 417.2 537 51.0
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 1.9e-114 417.2 548 51.8
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 3.3e-114 416.4 537 50.8
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 2.8e-113 413.3 557 49.7
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 3.7e-113 412.9 543 50.8
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 4.1e-112 409.5 557 47.4
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 5.3e-112 409.1 535 50.7
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 9.1e-112 408.3 561 48.1
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 1.5e-111 407.5 539 51.2
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 2.0e-111 407.1 538 49.6
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.3e-110 404.4 558 47.5
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 2.2e-110 403.7 540 48.7
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 6.5e-110 402.1 547 49.0
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 1.9e-109 400.6 540 48.0
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 2.5e-109 400.2 556 48.0
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 3.2e-109 399.8 544 48.5
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 2.1e-108 397.1 534 49.1
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 1.8e-107 394.0 539 48.8
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 2.3e-107 393.7 535 50.3
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 3.0e-107 393.3 536 48.7
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.0e-107 393.3 549 48.1
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 1.5e-106 391.0 551 47.4
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 5.7e-106 389.0 538 47.6
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 7.4e-106 388.7 545 49.2
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 9.7e-106 388.3 535 49.2
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 1.3e-105 387.9 532 49.8
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 1.7e-105 387.5 543 46.8
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 1.4e-104 384.4 542 49.3
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 1.4e-104 384.4 542 49.3
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 3.1e-104 383.3 536 47.8
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 2.0e-103 380.6 501 48.5
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 3.4e-103 379.8 549 47.4
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.4e-103 379.8 557 47.2
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 1.3e-102 377.9 539 47.7
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 1.9e-101 374.0 551 47.4
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.2e-101 373.2 549 46.6
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 5.5e-101 372.5 551 45.4
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 2.1e-100 370.5 572 44.1
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 1.4e-99 367.9 718 39.7
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 1.1e-98 364.8 465 51.4
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 1.4e-96 357.8 551 45.9
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 1.2e-95 354.8 557 45.8
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 4.5e-95 352.8 555 46.3
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 7.2e-93 345.5 514 47.1
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 9.4e-93 345.1 420 51.4
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 8.0e-92 342.0 536 42.0
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 2.2e-81 307.4 304 58.9
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 9.1e-80 302.0 299 60.2
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 4.2e-77 293.1 583 39.3
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 1.7e-70 271.2 352 48.6
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 1.7e-70 271.2 316 53.2
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 1.9e-69 267.7 529 39.1
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 2.1e-68 264.2 530 40.6
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 2.1e-68 264.2 530 40.6
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 5.2e-67 259.6 535 37.9
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 2.8e-60 237.3 401 42.9
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 5.2e-59 233.0 578 36.3
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.3e-53 213.8 390 41.5
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 6.2e-52 209.5 250 54.8
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 8.1e-52 209.1 595 34.6
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 3.5e-47 193.7 416 37.7
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 2.8e-44 184.1 178 56.7
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 9.9e-42 175.6 298 43.0
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 4.1e-40 170.2 177 54.8
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 9.6e-37 159.1 725 28.7
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.2e-36 158.7 283 41.3
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.6e-36 158.3 252 44.0
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 2.1e-36 157.9 517 31.5
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.3e-33 148.7 214 46.7
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 2.8e-28 131.0 547 31.3
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.4e-24 117.9 240 37.5
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 8.1e-20 102.8 467 27.2
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 2.9e-17 94.4 126 51.6
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 3.8e-17 94.0 288 33.7
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 4.9e-17 93.6 89 53.9
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.1e-15 88.2 118 45.8
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.1e-15 88.2 88 52.3
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 7.9e-15 86.3 179 39.1
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 3.3e-13 80.9 129 50.4
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.2e-10 72.4 108 47.2
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 5.8e-10 70.1 528 27.3
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 7.6e-10 69.7 194 33.0
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 4.2e-08 63.9 468 24.4
RcHm_v2.0_Chr1g0360321 Rosa chinensis HOM05D004539 ORTHO05D005482 1.8e-06 58.5 44 70.5
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 3.9e-06 57.4 228 29.8


User provided reference genes

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