Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 4.8e-213 744.2 370 100.0
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 1.8e-204 715.7 370 96.2
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.2e-203 713.0 370 95.9
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 1.7e-181 639.4 372 85.8
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 5.6e-177 624.4 370 85.1
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 7.3e-161 570.9 371 77.6
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.1e-159 567.0 371 74.9
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 9.9e-158 560.5 340 83.8
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 1.3e-157 560.1 371 74.1
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 1.1e-156 557.0 371 74.1
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 4.2e-156 555.1 370 74.1
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.8e-154 549.7 371 74.1
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 1.5e-153 546.6 371 72.8
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 3.3e-153 545.4 371 73.6
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 7.4e-153 544.3 371 72.8
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 7.4e-153 544.3 371 72.5
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 2.8e-152 542.3 371 72.8
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 2.8e-152 542.3 372 72.0
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 1.1e-151 540.4 373 71.8
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 4.0e-151 538.5 371 71.2
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 4.0e-151 538.5 371 72.5
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 7.6e-150 534.3 371 71.7
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 1.1e-148 530.4 379 71.2
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 5.1e-146 521.5 376 69.7
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.5e-145 520.0 370 69.5
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 8.2e-144 514.2 371 69.0
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 8.2e-144 514.2 371 69.5
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 6.9e-143 511.1 373 68.4
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.6e-142 509.2 371 68.5
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 5.5e-140 501.5 371 69.0
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 9.3e-140 500.7 371 65.5
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 2.7e-139 499.2 371 67.9
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 3.9e-138 495.4 371 65.2
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 5.1e-138 495.0 371 66.6
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 6.7e-138 494.6 372 68.0
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 1.9e-137 493.0 371 66.6
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 5.7e-137 491.5 368 67.1
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 5.7e-137 491.5 368 67.1
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 5.7e-137 491.5 371 67.7
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 9.7e-137 490.7 363 68.6
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 1.3e-136 490.3 371 66.3
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 6.3e-136 488.0 372 68.0
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 6.3e-136 488.0 370 66.8
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 6.3e-136 488.0 371 68.7
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 1.1e-135 487.3 371 65.0
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 4.5e-134 481.9 372 64.5
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 1.7e-133 479.9 371 66.0
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 6.5e-133 478.0 371 66.3
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 1.4e-132 476.9 371 63.6
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 4.2e-132 475.3 371 64.7
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 1.2e-131 473.8 330 71.8
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 7.9e-131 471.1 373 63.5
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 5.1e-130 468.4 354 68.4
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 2.0e-129 466.5 372 64.0
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 2.5e-129 466.1 375 63.7
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 6.3e-128 461.5 374 63.4
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 2.4e-127 459.5 380 63.4
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 5.3e-127 458.4 372 61.3
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 6.9e-127 458.0 371 61.2
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 9.1e-127 457.6 372 61.6
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 2.0e-126 456.4 403 60.5
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 5.9e-126 454.9 371 62.5
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 1.0e-125 454.1 353 66.3
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 3.8e-125 452.2 348 68.7
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 8.5e-125 451.1 355 64.8
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.1e-124 450.7 372 60.5
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 2.5e-124 449.5 371 60.9
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 4.2e-124 448.7 378 61.6
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 7.2e-124 448.0 378 61.6
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 1.2e-123 447.2 378 61.6
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 1.2e-123 447.2 376 62.8
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 2.7e-123 446.0 375 61.9
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 7.9e-123 444.5 375 61.6
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 1.0e-122 444.1 375 61.6
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 1.4e-122 443.7 361 62.9
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 5.1e-122 441.8 375 61.9
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 1.5e-121 440.3 376 62.0
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 1.5e-121 440.3 391 60.6
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 4.4e-121 438.7 378 60.6
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 7.4e-121 438.0 330 66.7
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 7.4e-121 438.0 304 73.7
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 9.7e-121 437.6 378 60.6
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 3.7e-120 435.6 375 59.7
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 8.2e-120 434.5 371 59.0
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 2.4e-119 433.0 379 60.9
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 3.1e-119 432.6 380 60.5
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 3.1e-119 432.6 417 54.4
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 4.1e-119 432.2 375 59.7
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 7.0e-119 431.4 379 60.7
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 1.5e-118 430.3 371 59.6
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 1.5e-118 430.3 372 61.8
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 2.6e-118 429.5 327 66.7
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 1.1e-116 424.1 378 59.5
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 1.9e-116 423.3 322 65.5
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 3.2e-116 422.5 348 63.2
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 7.2e-116 421.4 375 59.5
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 9.4e-116 421.0 387 59.2
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 6.1e-115 418.3 349 60.7
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 6.7e-114 414.8 372 58.9
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 2.6e-113 412.9 371 59.8
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 5.7e-113 411.8 335 62.4
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 4.1e-111 405.6 357 59.7
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 2.0e-110 403.3 357 59.4
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 1.1e-108 397.5 332 61.7
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 1.6e-107 393.7 356 59.6
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 4.7e-107 392.1 371 53.4
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 2.3e-106 389.8 371 52.3
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 5.2e-106 388.7 372 56.5
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 4.4e-105 385.6 351 59.0
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 1.3e-104 384.0 371 51.8
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 2.2e-104 383.3 377 52.8
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 2.8e-104 382.9 232 79.3
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 2.4e-103 379.8 303 62.0
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 2.2e-101 373.2 391 52.2
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 2.2e-101 373.2 331 57.7
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 6.5e-101 371.7 381 53.0
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 2.5e-100 369.8 394 52.5
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.6e-99 365.9 371 50.7
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.0e-97 360.1 395 49.6
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 1.8e-95 353.6 347 51.9
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.0e-89 333.6 370 49.5
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 2.9e-88 329.7 480 42.7
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 6.4e-88 328.6 301 59.1
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 1.5e-84 317.4 300 58.0
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 1.5e-84 317.4 384 45.6
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 1.2e-78 297.7 274 57.3
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 6.0e-78 295.4 242 61.6
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.7e-77 293.9 255 62.4
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 3.9e-77 292.7 339 46.6
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 1.5e-76 290.8 275 57.8
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 2.5e-76 290.0 410 41.7
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 4.3e-76 289.3 288 54.2
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 2.1e-70 270.4 387 41.3
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 3.7e-64 249.6 388 37.9
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 3.7e-64 249.6 242 55.0
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 7.1e-63 245.4 220 59.5
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 1.6e-62 244.2 211 55.9
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 4.3e-60 236.1 261 49.4
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 2.5e-52 210.3 209 55.5
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 9.6e-52 208.4 341 36.4
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 8.4e-48 195.3 387 33.9
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 3.0e-45 186.8 151 61.6
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 6.6e-45 185.7 115 77.4
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 1.8e-42 177.6 137 62.8
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 2.3e-29 134.0 148 53.4
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 1.3e-27 128.3 432 24.8
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 3.1e-26 123.6 73 82.2
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 6.5e-24 115.9 275 30.2
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 1.4e-23 114.8 72 75.0
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.5e-20 104.8 119 48.7
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 3.0e-13 80.5 42 90.5
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 6.3e-11 72.8 84 46.4
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 8.2e-11 72.4 78 47.4
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 2.6e-09 67.4 50 66.0
C07p07230 Brassica napus HOM05D004815 ORTHO05D005742 4.2e-07 60.1 59 49.2
RcHm_v2.0_Chr1g0351881 Rosa chinensis HOM05D004815 ORTHO05D005742 7.2e-07 59.3 40 75.0


User provided reference genes

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