Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 8.2e-126 453.8 231 100.0
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.9e-122 442.6 227 98.7
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 3.2e-122 441.8 227 98.2
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 2.7e-105 385.6 233 85.4
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 4.7e-105 384.8 233 86.3
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 8.8e-104 380.6 233 84.1
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 5.7e-103 377.9 233 83.3
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 5.5e-98 361.3 234 82.1
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 7.2e-98 360.9 231 81.8
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.1e-97 359.4 234 81.6
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.3e-94 347.8 234 78.2
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.4e-93 345.9 234 77.8
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.5e-92 342.0 234 76.5
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.2e-91 339.3 207 83.6
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.2e-90 335.5 207 83.1
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 3.2e-90 335.5 207 83.1
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 2.0e-84 316.2 233 71.2
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 2.3e-83 312.8 233 70.4
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 2.9e-83 312.4 241 72.2
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 1.5e-79 300.1 247 67.2
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 5.7e-79 298.1 236 68.6
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 7.5e-79 297.7 233 66.5
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 7.5e-79 297.7 237 67.9
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 9.8e-79 297.4 233 67.4
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 6.3e-78 294.7 233 69.5
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 2.4e-77 292.7 233 67.0
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 5.4e-77 291.6 236 66.9
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 7.0e-77 291.2 233 68.2
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 9.2e-77 290.8 187 82.9
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 2.7e-76 289.3 234 67.9
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 2.7e-76 289.3 233 67.0
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 7.8e-76 287.7 234 66.7
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 2.3e-75 286.2 232 63.8
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 2.9e-75 285.8 233 67.8
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.6e-73 280.0 233 63.9
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 4.7e-73 278.5 234 64.5
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 4.7e-73 278.5 242 62.4
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 2.3e-72 276.2 231 64.9
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 2.3e-72 276.2 236 65.3
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 2.0e-71 273.1 233 65.2
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 2.0e-71 273.1 233 65.2
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 2.6e-71 272.7 249 61.0
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 1.4e-69 266.9 315 51.7
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 2.4e-69 266.2 233 61.8
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 2.0e-68 263.1 187 73.8
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 4.6e-68 261.9 233 62.2
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 3.9e-67 258.8 232 62.1
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 8.6e-67 257.7 224 62.5
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.5e-66 256.9 243 61.3
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 3.3e-66 255.8 221 62.9
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 9.5e-66 254.2 232 62.9
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 3.6e-65 252.3 222 60.8
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 8.0e-65 251.1 225 64.4
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 8.0e-65 251.1 230 61.3
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 8.0e-65 251.1 226 61.9
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.1e-64 250.8 188 71.3
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 1.8e-64 250.0 234 62.8
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 2.3e-64 249.6 236 60.6
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 3.1e-64 249.2 194 68.6
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 5.2e-64 248.4 225 61.8
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 2.6e-63 246.1 238 59.2
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 4.4e-63 245.4 328 47.9
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 1.7e-62 243.4 235 60.9
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 3.7e-62 242.3 222 59.5
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 3.7e-62 242.3 222 59.5
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 6.4e-62 241.5 224 60.7
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 1.4e-61 240.4 215 61.4
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 1.9e-61 240.0 220 57.7
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 2.4e-61 239.6 233 60.1
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 3.2e-61 239.2 266 53.4
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 3.2e-61 239.2 225 57.3
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 1.0e-59 234.2 202 64.9
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.7e-59 233.4 234 58.5
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 3.0e-59 232.6 235 59.1
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 3.0e-59 232.6 234 59.0
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 5.1e-59 231.9 237 59.5
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 6.6e-59 231.5 186 67.7
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 1.5e-58 230.3 190 63.2
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 1.9e-58 229.9 225 55.1
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 1.9e-58 229.9 149 77.9
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 4.3e-58 228.8 220 60.5
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 5.6e-58 228.4 206 58.7
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 5.6e-58 228.4 224 60.7
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 7.3e-58 228.0 240 59.2
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 1.6e-57 226.9 236 57.6
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 2.8e-57 226.1 212 62.7
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 2.8e-57 226.1 199 63.8
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 6.2e-57 224.9 240 56.7
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 8.1e-57 224.6 228 55.7
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 2.3e-56 223.0 179 65.9
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 2.3e-56 223.0 234 57.7
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 3.1e-56 222.6 211 62.6
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 4.0e-56 222.2 234 56.0
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 1.2e-55 220.7 224 53.6
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 1.2e-55 220.7 212 56.1
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.2e-55 220.7 174 67.8
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 4.4e-55 218.8 207 57.0
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 5.8e-55 218.4 222 58.1
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 9.9e-55 217.6 222 56.3
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 6.4e-54 214.9 198 60.1
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 1.1e-53 214.2 232 54.7
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.9e-53 213.4 245 55.5
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 2.4e-53 213.0 252 50.8
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 2.4e-53 213.0 225 54.7
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 7.1e-53 211.5 227 52.9
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 7.1e-53 211.5 223 57.8
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 7.1e-53 211.5 232 54.3
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 7.8e-52 208.0 195 61.0
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 2.3e-51 206.5 209 54.1
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 3.9e-51 205.7 235 53.6
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 1.1e-50 204.1 209 55.5
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.9e-50 203.4 225 52.9
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 4.3e-50 202.2 234 53.0
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 2.8e-49 199.5 224 51.8
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 2.8e-49 199.5 244 52.5
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 6.2e-49 198.4 293 44.0
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 1.1e-48 197.6 191 58.1
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 2.4e-48 196.4 228 52.2
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 4.0e-48 195.7 225 50.7
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 5.2e-48 195.3 233 52.8
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 5.2e-48 195.3 245 50.6
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 6.8e-48 194.9 213 53.5
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 4.4e-47 192.2 226 53.1
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 7.6e-47 191.4 213 54.0
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 7.6e-47 191.4 210 53.8
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 3.8e-46 189.1 248 46.8
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 6.4e-46 188.3 191 56.0
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 1.1e-45 187.6 215 52.6
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 2.4e-45 186.4 234 45.3
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 3.2e-45 186.0 217 50.7
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 7.1e-45 184.9 247 47.8
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 9.2e-45 184.5 217 52.1
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 2.1e-44 183.3 217 51.6
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 2.1e-44 183.3 217 51.6
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 4.6e-44 182.2 121 75.2
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 7.8e-44 181.4 191 55.5
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 6.6e-43 178.3 169 59.2
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 1.1e-42 177.6 207 52.2
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.6e-41 173.7 234 48.3
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 3.6e-41 172.6 126 68.3
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 3.6e-41 172.6 158 60.1
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 2.4e-40 169.9 135 68.1
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 4.0e-40 169.1 117 65.8
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 1.2e-39 167.5 198 53.5
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 2.0e-39 166.8 197 51.3
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 2.0e-39 166.8 131 67.9
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 1.7e-38 163.7 196 46.9
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 3.8e-38 162.5 198 51.5
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 1.4e-37 160.6 121 67.8
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 3.9e-35 152.5 116 64.7
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 1.1e-34 151.0 155 58.1
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 1.1e-32 144.4 229 44.5
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 9.0e-32 141.4 125 59.2
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 5.8e-31 138.7 91 74.7
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 5.8e-31 138.7 91 74.7
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 3.2e-29 132.9 113 61.1
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 1.0e-27 127.9 164 48.2
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 2.3e-27 126.7 134 50.0
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 7.4e-26 121.7 79 72.2
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 4.5e-23 112.5 60 88.3
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 2.5e-21 106.7 88 60.2
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 9.3e-21 104.8 235 38.3
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 5.3e-16 89.0 85 48.2
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 7.1e-13 78.6 80 51.2
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 7.9e-12 75.1 101 41.6
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 1.5e-10 70.9 40 82.5
QL09p050907 Quercus lobata HOM05D004056 ORTHO05D004894 2.2e-09 67.0 95 48.4
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 5.9e-07 58.9 41 63.4
Dinv28834 Davidia involucrata HOM05D004056 ORTHO05D183586 5.0e-06 55.8 81 49.4


User provided reference genes

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