Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 7.6e-130 467.6 233 100.0
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 3.0e-110 402.5 210 95.7
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 4.3e-109 398.7 210 95.2
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 7.4e-101 371.3 243 81.1
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 6.5e-97 358.2 244 78.3
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.8e-92 342.8 241 75.9
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 3.1e-91 339.3 241 75.5
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 4.5e-90 335.5 241 74.3
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 6.3e-84 315.1 243 69.5
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 1.4e-70 270.8 244 60.7
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.5e-66 256.1 282 55.0
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.5e-66 256.1 282 55.0
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 5.9e-66 255.4 246 61.4
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 1.0e-65 254.6 245 60.4
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 2.2e-65 253.4 247 60.3
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 5.0e-65 252.3 224 61.6
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 1.1e-64 251.1 245 60.0
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.9e-64 250.4 245 59.2
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 2.5e-64 250.0 243 58.8
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 2.1e-63 246.9 259 56.8
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 2.7e-63 246.5 261 56.3
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 2.7e-63 246.5 227 61.7
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 2.3e-62 243.4 230 59.1
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 6.7e-62 241.9 244 58.6
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.0e-61 240.4 238 56.7
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 5.7e-61 238.8 220 60.5
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 1.3e-60 237.7 230 57.8
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 2.2e-60 236.9 280 51.4
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 4.8e-60 235.7 223 57.8
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 6.3e-60 235.3 255 55.3
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 1.4e-59 234.2 259 54.4
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.8e-59 233.8 236 59.7
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.4e-59 233.4 236 55.9
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 1.2e-58 231.1 228 58.8
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 2.0e-58 230.3 223 58.7
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 4.5e-58 229.2 226 58.0
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 1.7e-57 227.3 240 56.7
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 1.7e-57 227.3 224 57.1
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 2.2e-57 226.9 240 56.2
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 6.5e-57 225.3 223 57.4
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 3.2e-56 223.0 226 58.8
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 3.2e-56 223.0 236 56.8
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.6e-55 220.7 236 54.7
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.6e-55 220.7 243 53.5
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 2.1e-55 220.3 235 55.7
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 6.1e-55 218.8 228 56.1
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 6.1e-55 218.8 238 53.8
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 6.1e-55 218.8 240 54.2
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 8.0e-55 218.4 242 54.5
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 1.0e-54 218.0 238 53.8
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 3.0e-54 216.5 262 50.8
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 5.2e-54 215.7 256 52.0
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 8.8e-54 214.9 158 71.5
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 2.0e-53 213.8 239 50.6
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 2.6e-53 213.4 247 51.4
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 5.7e-53 212.2 242 55.0
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 9.8e-53 211.5 242 55.0
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.3e-52 211.1 241 53.5
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.2e-52 210.3 166 66.9
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 2.2e-52 210.3 218 56.4
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 3.7e-52 209.5 246 52.4
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 1.1e-51 208.0 246 52.0
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 1.1e-51 208.0 219 55.3
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 1.8e-51 207.2 221 56.1
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 2.4e-51 206.8 249 49.4
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 2.4e-51 206.8 223 56.5
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 3.1e-51 206.5 214 54.7
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 3.1e-51 206.5 240 52.9
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 9.1e-51 204.9 214 53.7
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 9.1e-51 204.9 242 52.1
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 9.1e-51 204.9 244 54.5
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 1.2e-50 204.5 215 54.9
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 1.2e-50 204.5 291 48.8
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 1.2e-50 204.5 244 51.6
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 2.0e-50 203.8 245 53.1
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 3.5e-50 203.0 242 52.1
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 3.5e-50 203.0 242 51.7
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 3.5e-50 203.0 223 56.5
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 4.5e-50 202.6 231 52.4
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 5.9e-50 202.2 215 54.4
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 5.9e-50 202.2 233 51.5
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 5.9e-50 202.2 222 55.4
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 1.0e-49 201.4 222 55.0
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.0e-49 201.4 222 55.0
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.7e-49 200.7 204 58.3
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 2.2e-49 200.3 214 53.7
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 2.2e-49 200.3 233 51.9
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 2.2e-49 200.3 222 55.9
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.9e-49 199.9 239 53.1
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 8.5e-49 198.4 222 54.5
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 1.1e-48 198.0 229 54.1
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 1.5e-48 197.6 228 51.3
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 1.5e-48 197.6 209 54.1
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 1.5e-48 197.6 244 52.0
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 3.2e-48 196.4 243 51.9
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 7.2e-48 195.3 197 58.4
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 9.4e-48 194.9 240 52.1
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 9.4e-48 194.9 240 52.1
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 9.4e-48 194.9 216 53.2
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 9.4e-48 194.9 222 54.5
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 1.2e-47 194.5 217 52.5
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 4.7e-47 192.6 243 51.9
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 6.1e-47 192.2 242 50.0
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 8.0e-47 191.8 245 50.6
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 1.0e-46 191.4 233 51.9
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 1.0e-46 191.4 235 51.5
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 1.0e-46 191.4 253 47.4
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.8e-46 190.7 239 51.9
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.8e-46 190.7 212 52.8
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 3.0e-46 189.9 249 47.8
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 3.0e-46 189.9 260 46.9
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 8.8e-46 188.3 228 50.9
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 8.8e-46 188.3 206 55.8
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 2.0e-45 187.2 248 47.6
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 3.4e-45 186.4 121 76.9
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 4.4e-45 186.0 225 52.4
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 7.5e-45 185.3 161 63.4
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 2.8e-44 183.3 128 71.9
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 4.9e-44 182.6 234 48.3
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 6.3e-44 182.2 230 50.9
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 6.3e-44 182.2 242 47.9
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 8.3e-44 181.8 235 47.2
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.4e-43 181.0 236 47.0
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 3.1e-43 179.9 239 47.7
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 4.1e-43 179.5 240 45.8
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 7.0e-43 178.7 258 45.7
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 2.0e-42 177.2 244 46.7
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 2.7e-42 176.8 246 47.6
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 2.9e-41 173.3 195 54.4
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 1.9e-40 170.6 222 46.8
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 4.3e-40 169.5 161 58.4
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 4.3e-40 169.5 153 59.5
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 7.3e-40 168.7 264 42.4
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 2.8e-39 166.8 134 63.4
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 4.7e-39 166.0 219 47.9
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 1.0e-38 164.9 176 55.1
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 2.0e-37 160.6 220 45.9
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.3e-36 157.9 151 56.3
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 2.9e-36 156.8 213 46.5
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 3.2e-35 153.3 133 59.4
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 7.3e-32 142.1 229 43.7
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 9.5e-32 141.7 135 55.6
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.2e-31 141.4 192 45.8
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 4.7e-31 139.4 225 44.0
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 1.0e-30 138.3 240 41.2
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 4.0e-30 136.3 115 60.9
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.5e-29 134.4 119 58.8
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 3.4e-29 133.3 259 38.2
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 5.8e-29 132.5 132 56.1
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 9.2e-27 125.2 179 47.5
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 1.1e-22 111.7 80 70.0
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 1.4e-22 111.3 186 37.1
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 7.8e-18 95.5 108 55.6
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 7.3e-16 89.0 186 37.6
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 3.4e-13 80.1 57 64.9
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.1e-06 57.0 51 54.9


User provided reference genes

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