Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A07G073500 Gossypium hirsutum HOM05D008015 ORTHO05D009180 9.4e-89 330.1 160 100.0
Gorai.001G082600 Gossypium raimondii HOM05D008015 ORTHO05D009180 7.0e-84 313.9 160 94.4
Gohir.D07G078200 Gossypium hirsutum HOM05D008015 ORTHO05D009180 5.9e-83 310.8 160 93.1
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 1.7e-29 133.3 147 54.4
Thecc.04G053900 Theobroma cacao HOM05D008015 ORTHO05D009180 5.6e-25 118.2 157 49.7
Potri.004G085100 Populus trichocarpa HOM05D008015 ORTHO05D009180 3.5e-19 99.0 152 44.7
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 1.3e-18 97.1 152 39.5
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 3.0e-18 95.9 155 42.6
Nn4g24386 Nelumbo nucifera HOM05D008015 ORTHO05D009180 5.1e-18 95.1 164 39.6
Manes.02G078100 Manihot esculenta HOM05D008015 ORTHO05D009180 1.1e-15 87.4 151 44.4
Oeu032314.1 Olea europaea HOM05D008015 ORTHO05D009180 1.1e-15 87.4 151 37.1
CiPaw.03G073500 Carya illinoinensis HOM05D008015 ORTHO05D009180 2.4e-15 86.3 116 44.0
MD09G1270500 Malus domestica HOM05D008015 ORTHO05D009180 5.3e-15 85.1 99 52.5
MBI19_g08383_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 9.0e-15 84.3 157 38.9
Lalb_Chr17g0346041 Lupinus albus HOM05D008015 ORTHO05D009180 1.5e-14 83.6 146 37.0
TAR629G2519 Trochodendron aralioides HOM05D008015 ORTHO05D009180 2.6e-14 82.8 92 47.8
Cfa007792 Carpinus fangiana HOM05D008015 ORTHO05D009180 1.3e-13 80.5 159 38.4
Medtr3g065210 Medicago truncatula HOM05D008015 ORTHO05D009180 1.3e-13 80.5 145 42.1
Prupe.3G166400 Prunus persica HOM05D008015 ORTHO05D009180 1.7e-13 80.1 102 49.0
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 2.2e-13 79.7 88 54.5
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 2.9e-13 79.3 145 42.1
DCAR_014163 Daucus carota HOM05D008015 ORTHO05D009180 3.8e-13 79.0 136 39.0
Lalb_Chr18g0053531 Lupinus albus HOM05D008015 ORTHO05D009180 4.9e-13 78.6 87 49.4
TWI77G0273 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 4.9e-13 78.6 147 40.1
Glyma.14G213100 Glycine max HOM05D008015 ORTHO05D009180 6.5e-13 78.2 142 41.5
CDE05G1037 Ceratophyllum demersum HOM05D008015 ORTHO05D009180 8.4e-13 77.8 142 35.2
CSS0009801 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 1.1e-12 77.4 161 35.4
CSS0018355 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 1.1e-12 77.4 161 35.4
Potri.017G131300 Populus trichocarpa HOM05D008015 ORTHO05D009180 1.1e-12 77.4 159 41.5
Nn3g18370 Nelumbo nucifera HOM05D008015 ORTHO05D009180 1.9e-12 76.6 97 44.3
Lalb_Chr15g0084981 Lupinus albus HOM05D008015 ORTHO05D009180 2.5e-12 76.3 143 42.7
MSTRG.3702 Avicennia marina HOM05D008015 ORTHO05D009180 3.2e-12 75.9 165 34.5
A04p10720 Brassica napus HOM05D009275 ORTHO05D009180 4.2e-12 75.5 162 38.9
RcHm_v2.0_Chr3g0491241 Rosa chinensis HOM05D008015 ORTHO05D009180 5.5e-12 75.1 99 43.4
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 7.1e-12 74.7 162 40.1
COL.COLO4_13422 Corchorus olitorius HOM05D009275 ORTHO05D009180 7.1e-12 74.7 123 45.5
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 7.1e-12 74.7 173 40.5
TPR.G30001 Trifolium pratense HOM05D008015 ORTHO05D009180 7.1e-12 74.7 150 36.7
VMungo0647G1978 Vigna mungo HOM05D008015 ORTHO05D009180 7.1e-12 74.7 140 40.7
Sabra17G0109400 Salix brachista HOM05D008015 ORTHO05D009180 9.3e-12 74.3 158 41.1
SalBow5G5173 Salvia bowleyana HOM05D008015 ORTHO05D009180 9.3e-12 74.3 86 47.7
BcaC02g09585 Brassica carinata HOM05D009275 ORTHO05D009180 1.6e-11 73.6 164 39.6
C04p44430 Brassica napus HOM05D009275 ORTHO05D009180 1.6e-11 73.6 164 39.6
BolC4t26014H Brassica oleracea HOM05D009275 ORTHO05D009180 1.6e-11 73.6 164 39.6
CsaV3_5G023910 Cucumis sativus L. HOM05D009275 ORTHO05D009180 2.1e-11 73.2 161 34.8
Eucgr.F02874 Eucalyptus grandis HOM05D008015 ORTHO05D009180 2.1e-11 73.2 173 32.9
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 2.1e-11 73.2 95 47.4
Medtr5g077940 Medicago truncatula HOM05D008015 ORTHO05D009180 2.7e-11 72.8 145 35.9
Thhalv10027910m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 3.5e-11 72.4 183 37.2
Actinidia35723 Actinidia chinensis HOM05D008015 ORTHO05D009180 6.1e-11 71.6 149 34.9
AL7G46310 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 6.1e-11 71.6 162 36.4
BcaB06g27100 Brassica carinata HOM05D009275 ORTHO05D009180 6.1e-11 71.6 165 39.4
SGA_v2.0_scaffold45G17152 Striga asiatica HOM05D008015 ORTHO05D009180 6.1e-11 71.6 154 35.7
CARHR215350 Cardamine hirsuta HOM05D009275 ORTHO05D009180 1.0e-10 70.9 169 37.3
LjContig00141g0001505 Lotus japonicus HOM05D008015 ORTHO05D009180 1.0e-10 70.9 144 36.8
MBI13_g45895_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.0e-10 70.9 166 34.9
MELO3C022825.2 Cucumis melo HOM05D008015 ORTHO05D009180 1.8e-10 70.1 164 34.1
Phvul.001G229400 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 2.3e-10 69.7 90 50.0
VMungo1383G2632 Vigna mungo HOM05D008015 ORTHO05D009180 3.0e-10 69.3 90 50.0
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 3.9e-10 68.9 85 48.2
Cpa.g.sc340.4 Carica papaya HOM05D008015 ORTHO05D009180 5.1e-10 68.6 160 38.1
Aqoxy1G02179 Aquilegia oxysepala HOM05D008015 ORTHO05D009180 6.7e-10 68.2 162 34.0
Carub.0007s3272 Capsella rubella HOM05D009275 ORTHO05D009180 8.7e-10 67.8 162 37.0
Cc07_g13270 Coffea canephora HOM05D008015 ORTHO05D009180 8.7e-10 67.8 160 30.6
Aa31LG9G17500 Aethionema arabicum HOM05D009275 ORTHO05D009180 1.1e-09 67.4 177 32.8
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 1.9e-09 66.6 137 36.5
CANSAT35G1526 Cannabis sativa HOM05D008015 ORTHO05D009180 3.3e-09 65.9 145 36.6
FAN23G1273 Fragaria x ananassa HOM05D008015 ORTHO05D009180 4.3e-09 65.5 121 38.0
Glyma.11G215300 Glycine max HOM05D008015 ORTHO05D009180 4.3e-09 65.5 88 47.7
AT5G37550 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 5.7e-09 65.1 168 36.3
Rhsim10G0178500 Rhododendron simsii HOM05D008015 ORTHO05D009180 7.4e-09 64.7 81 45.7
Actinidia28799 Actinidia chinensis HOM05D008015 ORTHO05D009180 1.3e-08 63.9 144 32.6
FAN26G1918 Fragaria x ananassa HOM05D008015 ORTHO05D009180 1.3e-08 63.9 122 38.5
ATR0753G067 Amborella trichopoda HOM05D008015 ORTHO05D009180 1.6e-08 63.5 104 36.5
FvH4_1g30203 Fragaria vesca HOM05D008015 ORTHO05D009180 1.6e-08 63.5 90 43.3
PSO478G3758 Papaver somniferum HOM05D008015 ORTHO05D009180 4.8e-08 62.0 165 33.3
MBI13_g14024_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 6.3e-08 61.6 103 35.9
Phvul.008G237600 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 1.1e-07 60.8 131 39.7
Psat2g045760 Pisum sativum HOM05D008015 ORTHO05D009180 1.1e-07 60.8 89 44.9
CARHR292200 Cardamine hirsuta HOM05D009275 ORTHO05D009180 1.4e-07 60.5 103 40.8
TWI74G1025 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 2.4e-07 59.7 135 37.0
Lsat_1_v5_gn_8_114880 Lactuca sativa HOM05D008015 ORTHO05D009180 4.1e-07 58.9 104 43.3
arahy.Tifrunner.gnm1.ann1.NRE7W4 Arachis hypogaea HOM05D009275 ORTHO05D009180 6.9e-07 58.2 105 41.0
Aa31LG2G2900 Aethionema arabicum HOM05D009275 ORTHO05D009180 1.2e-06 57.4 155 34.2
Sp5g21250 Schrenkiella parvula HOM05D009275 ORTHO05D009180 2.0e-06 56.6 158 32.3
MD06G1165700 Malus domestica HOM05D007505 ORTHO05D009476 3.4e-06 55.8 83 42.2
Sc04g0001500 Simmondsia chinensis HOM05D007505 ORTHO05D009476 3.4e-06 55.8 82 42.7
Thhalv10019019m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 4.5e-06 55.5 100 40.0
A02p13520 Brassica napus HOM05D009275 ORTHO05D009180 7.7e-06 54.7 100 41.0
Lalb_Chr12g0201901 Lupinus albus HOM05D007505 ORTHO05D009476 1.0e-05 54.3 98 38.8
MBI13_g24899_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.0e-05 54.3 73 46.6


User provided reference genes

Program Settings