Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.1e-195 686.4 343 100.0
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 2.0e-184 649.0 343 94.5
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.1e-182 643.3 343 93.9
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 1.9e-147 526.2 344 75.9
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 3.0e-140 502.3 334 74.9
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 3.8e-135 485.3 344 69.8
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.7e-132 476.5 344 68.9
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.5e-131 473.4 344 68.6
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.9e-131 473.0 344 68.3
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 1.2e-117 427.2 344 59.9
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 2.3e-116 422.9 345 58.3
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 7.9e-109 397.9 344 57.6
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 3.4e-104 382.5 344 54.9
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 4.5e-104 382.1 346 54.9
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 3.8e-103 379.0 344 55.5
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 3.8e-103 379.0 344 53.8
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 3.2e-102 375.9 344 52.6
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 7.2e-102 374.8 346 53.8
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 1.2e-101 374.0 344 54.4
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 3.6e-101 372.5 344 53.5
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 4.6e-101 372.1 344 52.0
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 2.5e-99 366.3 344 53.2
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 2.8e-98 362.8 343 52.5
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 6.3e-98 361.7 344 54.4
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 1.1e-97 360.9 355 51.3
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 1.8e-97 360.1 348 52.6
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 1.5e-96 357.1 345 52.5
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 4.5e-96 355.5 344 52.0
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 5.9e-96 355.1 344 52.3
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 1.9e-94 350.1 354 50.3
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 1.9e-94 350.1 347 50.4
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 2.5e-94 349.7 347 50.4
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 3.2e-94 349.4 344 52.0
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 3.2e-94 349.4 347 52.2
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 6.1e-93 345.1 344 52.0
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 7.9e-93 344.7 348 50.6
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 3.0e-92 342.8 343 49.3
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 5.1e-92 342.0 346 49.7
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 5.1e-92 342.0 347 50.1
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 2.6e-91 339.7 343 49.6
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.3e-90 337.4 343 51.0
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 2.8e-90 336.3 347 49.0
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 6.3e-90 335.1 345 51.3
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 8.2e-90 334.7 346 51.7
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 4.1e-89 332.4 345 47.8
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.2e-88 330.9 344 49.7
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 2.6e-88 329.7 344 48.8
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 1.0e-87 327.8 348 46.6
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 1.7e-87 327.0 338 47.0
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 2.2e-87 326.6 344 45.9
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 1.1e-86 324.3 291 54.3
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 1.1e-86 324.3 344 49.7
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 7.2e-86 321.6 319 49.8
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.1e-85 320.1 345 48.4
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 2.7e-85 319.7 344 49.7
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 4.7e-85 318.9 338 45.9
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 8.0e-85 318.2 343 47.2
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 5.2e-84 315.5 324 49.7
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 5.2e-84 315.5 344 49.1
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 1.5e-83 313.9 348 48.0
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 2.0e-83 313.5 344 47.7
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 2.6e-83 313.2 338 45.6
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 2.6e-83 313.2 344 46.2
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 3.3e-83 312.8 344 46.5
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 5.7e-83 312.0 344 47.7
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 1.3e-82 310.8 346 48.6
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 8.2e-82 308.1 338 47.0
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.1e-81 307.8 347 47.0
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.4e-81 307.4 347 47.3
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.8e-81 307.0 345 47.5
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.8e-81 307.0 345 47.5
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 2.4e-81 306.6 348 47.7
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 3.1e-81 306.2 348 47.1
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 5.3e-81 305.4 344 45.1
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 9.1e-81 304.7 348 47.1
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 9.1e-81 304.7 312 49.4
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 1.2e-80 304.3 282 52.8
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 4.5e-80 302.4 287 50.2
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 4.5e-80 302.4 344 46.5
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 1.0e-79 301.2 344 45.9
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 2.2e-79 300.1 344 45.3
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 5.0e-79 298.9 344 46.5
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 6.5e-79 298.5 344 44.8
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 8.5e-79 298.1 344 45.1
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.9e-78 297.0 318 47.2
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 2.1e-77 293.5 318 47.2
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 3.6e-77 292.7 286 49.7
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 3.6e-77 292.7 341 46.3
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 4.0e-76 289.3 330 46.1
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 6.8e-76 288.5 345 45.5
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.5e-75 287.3 344 45.1
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 4.4e-75 285.8 345 44.1
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 1.3e-74 284.3 344 43.6
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.3e-74 284.3 352 43.8
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.7e-74 283.9 344 42.4
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 3.7e-74 282.7 348 45.7
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 8.3e-74 281.6 344 43.0
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 1.8e-73 280.4 343 44.0
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 3.1e-73 279.6 344 43.9
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 1.2e-72 277.7 332 43.7
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 2.0e-72 276.9 344 41.9
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 2.0e-72 276.9 331 44.4
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 2.7e-72 276.6 348 44.0
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 2.7e-72 276.6 335 43.9
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 2.7e-72 276.6 344 42.4
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 5.9e-72 275.4 344 42.4
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 7.7e-72 275.0 346 42.8
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 2.9e-71 273.1 348 43.7
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 3.2e-70 269.6 345 44.6
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 5.5e-70 268.9 345 42.3
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 8.0e-69 265.0 260 51.5
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 8.0e-69 265.0 339 43.1
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 1.4e-68 264.2 344 41.9
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.8e-68 263.8 307 44.0
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 6.8e-68 261.9 346 41.0
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 8.8e-68 261.5 347 42.1
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.2e-67 261.2 343 42.6
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 7.5e-67 258.5 307 43.6
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 1.3e-66 257.7 345 41.7
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 8.3e-66 255.0 321 43.3
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 1.8e-65 253.8 345 39.1
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 7.0e-65 251.9 291 44.7
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 5.9e-64 248.8 339 42.8
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 2.9e-63 246.5 344 41.3
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 3.8e-63 246.1 280 45.0
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 5.0e-63 245.7 346 40.5
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 1.1e-62 244.6 350 40.9
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 4.7e-61 239.2 310 43.5
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 6.8e-60 235.3 335 40.9
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 1.1e-57 228.0 293 40.6
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 9.2e-57 224.9 329 41.0
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 1.2e-56 224.6 345 38.6
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 3.5e-56 223.0 334 37.4
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 6.6e-55 218.8 275 40.0
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 9.5e-54 214.9 137 68.6
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 3.7e-50 203.0 342 36.3
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.4e-49 200.3 137 65.0
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 2.4e-49 200.3 200 49.0
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 5.4e-49 199.1 129 66.7
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 4.4e-43 179.5 242 40.9
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 9.8e-43 178.3 133 71.4
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.3e-42 177.9 242 40.1
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 1.6e-40 171.0 211 39.8
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 1.2e-32 144.8 299 32.4
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 9.6e-30 135.2 103 55.3
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 4.0e-28 129.8 164 42.1
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 1.5e-11 74.7 149 31.5
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 4.6e-08 63.2 42 71.4


User provided reference genes

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