Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A07G059600 Gossypium hirsutum HOM05D002930 ORTHO05D003283 4.2e-50 201.1 101 100.0
Gorai.013G151200 Gossypium raimondii HOM05D002930 ORTHO05D003283 4.2e-50 201.1 101 100.0
Gohir.D07G116100 Gossypium hirsutum HOM05D002930 ORTHO05D003283 2.2e-43 178.7 93 96.8
Gohir.D10G155925 Gossypium hirsutum HOM05D002930 ORTHO05D003283 2.2e-43 178.7 93 96.8
Gorai.001G179200 Gossypium raimondii HOM05D002930 ORTHO05D003283 4.9e-43 177.6 93 95.7
Gohir.D07G104000 Gossypium hirsutum HOM05D002930 ORTHO05D003283 8.4e-43 176.8 93 95.7
Gorai.005G109700 Gossypium raimondii HOM05D002930 ORTHO05D003283 1.4e-42 176.0 92 95.7
Gohir.A08G185020 Gossypium hirsutum HOM05D002930 ORTHO05D003283 5.5e-42 174.1 92 95.7
Gohir.D11G258550 Gossypium hirsutum HOM05D002930 ORTHO05D003283 5.5e-42 174.1 93 93.5
Gorai.007G276800 Gossypium raimondii HOM05D002930 ORTHO05D003283 5.5e-42 174.1 93 93.5
Gohir.D04G075400 Gossypium hirsutum HOM05D002930 ORTHO05D003283 7.1e-42 173.7 93 93.5
Gohir.D02G096000 Gossypium hirsutum HOM05D002930 ORTHO05D003283 9.3e-42 173.3 92 94.6
Gohir.D01G034401 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.6e-41 172.6 92 94.6
Gohir.D10G213350 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.6e-41 172.6 92 93.5
Gohir.D06G133100 Gossypium hirsutum HOM05D002930 ORTHO05D003283 8.7e-40 166.8 93 92.5
Gorai.008G067700 Gossypium raimondii HOM05D002930 ORTHO05D003283 1.1e-39 166.4 92 93.5
Gohir.D01G193850 Gossypium hirsutum HOM05D002930 ORTHO05D003283 4.3e-39 164.5 92 91.3
Gohir.D04G169700 Gossypium hirsutum HOM05D002930 ORTHO05D003283 7.4e-39 163.7 92 89.1
Gorai.004G215100 Gossypium raimondii HOM05D002930 ORTHO05D003283 4.5e-36 154.5 78 98.7
Gohir.D11G053151 Gossypium hirsutum HOM05D002930 ORTHO05D003283 6.5e-35 150.6 82 93.9
Gohir.D02G064100 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.4e-34 149.4 75 98.7
Gohir.D05G174300 Gossypium hirsutum HOM05D002930 ORTHO05D003283 9.7e-31 136.7 89 80.9
Gorai.012G158000 Gossypium raimondii HOM05D002930 ORTHO05D003283 1.3e-30 136.3 80 86.2
Duzib138G0507 Durio zibethinus HOM05D002930 ORTHO05D003283 2.4e-29 132.1 78 85.9
Gorai.007G133300 Gossypium raimondii HOM05D002930 ORTHO05D003283 9.0e-29 130.2 78 83.3
Gohir.A11G119600 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.2e-28 129.8 78 83.3
Thecc.01G286000 Theobroma cacao HOM05D002930 ORTHO05D003283 2.0e-28 129.0 78 83.3
Gohir.D11G124400 Gossypium hirsutum HOM05D002930 ORTHO05D003283 4.5e-28 127.9 78 82.1
CsaV3_7G028480 Cucumis sativus L. HOM05D002930 ORTHO05D003283 5.9e-28 127.5 78 75.6
Sed0017862 Sechium edule HOM05D002930 ORTHO05D003283 5.9e-28 127.5 78 75.6
ClCG09G006750 Citrullus lanatus HOM05D002930 ORTHO05D003283 1.3e-27 126.3 78 74.4
MELO3C015874.2 Cucumis melo HOM05D002930 ORTHO05D003283 1.7e-27 125.9 78 74.4
Prupe.8G248000 Prunus persica HOM05D002930 ORTHO05D003283 5.0e-27 124.4 78 75.6
RcHm_v2.0_Chr6g0291991 Rosa chinensis HOM05D002930 ORTHO05D003283 1.9e-26 122.5 78 73.1
FvH4_2g24180 Fragaria vesca HOM05D002930 ORTHO05D003283 3.2e-26 121.7 78 73.1
FAN24G0623 Fragaria x ananassa HOM05D002930 ORTHO05D003283 3.2e-26 121.7 78 73.1
FAN27G1593 Fragaria x ananassa HOM05D002930 ORTHO05D003283 3.2e-26 121.7 78 73.1
Sabra14G0103600 Salix brachista HOM05D002930 ORTHO05D003283 1.6e-25 119.4 82 69.5
Medtr1g089760 Medicago truncatula HOM05D002930 ORTHO05D003283 3.6e-25 118.2 83 67.5
Haze_04772 Corylus avellana HOM05D002930 ORTHO05D003283 4.6e-25 117.9 77 72.7
CiPaw.07G095900 Carya illinoinensis HOM05D002930 ORTHO05D003283 6.1e-25 117.5 77 71.4
Potri.014G137200 Populus trichocarpa HOM05D002930 ORTHO05D003283 6.1e-25 117.5 87 71.3
MD11G1292400 Malus domestica HOM05D002930 ORTHO05D003283 1.0e-24 116.7 78 70.5
CANSAT25G2793 Cannabis sativa HOM05D002930 ORTHO05D003283 1.4e-24 116.3 76 72.4
Glyma.10G023700 Glycine max HOM05D002930 ORTHO05D003283 1.4e-24 116.3 83 66.3
Psat6g169880 Pisum sativum HOM05D002930 ORTHO05D003283 1.4e-24 116.3 83 66.3
Cfa006078 Carpinus fangiana HOM05D002930 ORTHO05D003283 1.8e-24 115.9 78 70.5
Eucgr.H01545 Eucalyptus grandis HOM05D002930 ORTHO05D003283 1.8e-24 115.9 78 67.9
Glyma.02G150200 Glycine max HOM05D002930 ORTHO05D003283 1.8e-24 115.9 83 66.3
QL12p022973 Quercus lobata HOM05D002930 ORTHO05D003283 3.0e-24 115.2 78 71.8
TWI59G1251 Tripterygium wilfordii HOM05D002930 ORTHO05D003283 3.0e-24 115.2 78 69.2
Phvul.007G168500 Phaseolus vulgaris HOM05D002930 ORTHO05D003283 6.7e-24 114.0 83 63.9
Duzib177G0642 Durio zibethinus HOM05D002930 ORTHO05D003283 8.8e-24 113.6 88 64.8
Thecc.05G299700 Theobroma cacao HOM05D002930 ORTHO05D003283 1.1e-23 113.2 88 63.6
TPR.G13301 Trifolium pratense HOM05D002930 ORTHO05D003283 1.1e-23 113.2 83 61.4
MD03G1271800 Malus domestica HOM05D002930 ORTHO05D003283 2.5e-23 112.1 78 66.7
Gohir.D13G110101 Gossypium hirsutum HOM05D002930 ORTHO05D003283 7.4e-23 110.5 78 61.5
CANSAT54G0439 Cannabis sativa HOM05D002930 ORTHO05D003283 9.7e-23 110.2 78 67.9
Lalb_Chr21g0306621 Lupinus albus HOM05D002930 ORTHO05D003283 9.7e-23 110.2 83 63.9
Atru.chr5.1328 Acer truncatum HOM05D002930 ORTHO05D003283 1.3e-22 109.8 78 65.4
Gohir.A13G106800 Gossypium hirsutum HOM05D002930 ORTHO05D003283 2.2e-22 109.0 78 61.5
Gorai.013G123400 Gossypium raimondii HOM05D002930 ORTHO05D003283 2.2e-22 109.0 78 60.3
Lj5g0012178 Lotus japonicus HOM05D002930 ORTHO05D003283 2.2e-22 109.0 78 66.7
Rhsim01G0277700 Rhododendron simsii HOM05D002930 ORTHO05D003283 4.8e-22 107.8 78 64.1
CSS0023451 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 8.2e-22 107.1 78 64.1
Nn3g21179 Nelumbo nucifera HOM05D002930 ORTHO05D003283 1.8e-21 105.9 78 64.1
PGR119G1041 Punica granatum HOM05D002930 ORTHO05D003283 3.1e-21 105.1 78 66.7
GSVIVG01022038001 Vitis vinifera HOM05D002930 ORTHO05D003283 3.1e-21 105.1 78 62.8
GSVIVG01011059001 Vitis vinifera HOM05D002930 ORTHO05D003283 5.3e-21 104.4 78 65.4
Dinv11268 Davidia involucrata HOM05D002930 ORTHO05D003283 6.9e-21 104.0 78 64.1
vmacro14944 Vaccinium macrocarpon HOM05D002930 ORTHO05D003283 9.1e-21 103.6 75 64.0
Eucgr.B02004 Eucalyptus grandis HOM05D002930 ORTHO05D003283 1.2e-20 103.2 78 64.1
Lj1A43T58 Lonicera japonica HOM05D002930 ORTHO05D003283 1.5e-20 102.8 78 66.7
Sc05g0005220 Simmondsia chinensis HOM05D002930 ORTHO05D003283 1.5e-20 102.8 78 65.4
AL4G47650 Arabidopsis lyrata HOM05D002930 ORTHO05D003283 2.0e-20 102.4 78 64.1
BraA04t18952Z Brassica rapa HOM05D002930 ORTHO05D003283 2.0e-20 102.4 78 61.5
CARHR143440 Cardamine hirsuta HOM05D002930 ORTHO05D003283 3.4e-20 101.7 78 61.5
HanXRQChr04g0117981 Helianthus annuus HOM05D002930 ORTHO05D003283 3.4e-20 101.7 87 57.5
Lsat_1_v5_gn_8_55460 Lactuca sativa HOM05D002930 ORTHO05D003283 3.4e-20 101.7 78 59.0
Aa31LG1G29470 Aethionema arabicum HOM05D002930 ORTHO05D003283 4.5e-20 101.3 78 62.8
AT2G48060 Arabidopsis thaliana HOM05D002930 ORTHO05D003283 5.9e-20 100.9 78 62.8
MBI19_g21638_MAGBIO Magnolia biondii HOM05D002930 ORTHO05D003283 5.9e-20 100.9 81 61.7
Sp4g29950 Schrenkiella parvula HOM05D002930 ORTHO05D003283 5.9e-20 100.9 78 61.5
Actinidia21090 Actinidia chinensis HOM05D002930 ORTHO05D003283 7.7e-20 100.5 78 60.3
Migut.N02138 Erythranthe guttata HOM05D002930 ORTHO05D003283 7.7e-20 100.5 78 65.4
Ah.08g212870 Amaranthus hybridus HOM05D002930 ORTHO05D003283 1.0e-19 100.1 75 62.7
CSS0004978 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 1.3e-19 99.8 78 62.8
THA.LOC104802222 Tarenaya hassleriana HOM05D002930 ORTHO05D003283 1.3e-19 99.8 78 61.5
EL10Ac7g17191 Beta vulgaris HOM05D002930 ORTHO05D003283 1.7e-19 99.4 83 60.2
PSO210G3942 Papaver somniferum HOM05D002930 ORTHO05D003283 1.7e-19 99.4 78 60.3
BolC4t28786H Brassica oleracea HOM05D002930 ORTHO05D003283 2.2e-19 99.0 78 60.3
BcaC02g12557 Brassica carinata HOM05D002930 ORTHO05D003283 2.9e-19 98.6 78 59.0
A05p00070 Brassica napus HOM05D002930 ORTHO05D003283 2.9e-19 98.6 78 59.0
BNapus_Darmor_BZH_scaffold_188p00030 Brassica napus HOM05D002930 ORTHO05D003283 2.9e-19 98.6 78 59.0
BolSC55t61233H Brassica oleracea HOM05D002930 ORTHO05D003283 2.9e-19 98.6 78 59.0
BraA05t19003Z Brassica rapa HOM05D002930 ORTHO05D003283 2.9e-19 98.6 78 59.0
Thhalv10001278m.g Eutrema salsugineum HOM05D002930 ORTHO05D003283 2.9e-19 98.6 78 59.0
Oeu047489.1 Olea europaea HOM05D002930 ORTHO05D003283 2.9e-19 98.6 78 64.1
BcaB02g08731 Brassica carinata HOM05D002930 ORTHO05D003283 3.8e-19 98.2 78 59.0
ECA247G2962 Erigeron canadensis HOM05D002930 ORTHO05D003283 5.0e-19 97.8 87 57.5
Manes.09G162700 Manihot esculenta HOM05D002930 ORTHO05D003283 5.0e-19 97.8 78 57.7
PSO170G5253 Papaver somniferum HOM05D002930 ORTHO05D003283 5.0e-19 97.8 78 59.0
SalBow3G3307 Salvia bowleyana HOM05D002930 ORTHO05D003283 5.0e-19 97.8 78 61.5
Ah.04g159840 Amaranthus hybridus HOM05D002930 ORTHO05D003283 6.5e-19 97.4 78 59.0
SalBow6G0735 Salvia bowleyana HOM05D002930 ORTHO05D003283 6.5e-19 97.4 78 61.5
MSTRG.17432 Avicennia marina HOM05D002930 ORTHO05D003283 8.5e-19 97.1 78 59.0
ECA236G2879 Erigeron canadensis HOM05D002930 ORTHO05D003283 1.1e-18 96.7 87 57.5
Potri.005G037700 Populus trichocarpa HOM05D002930 ORTHO05D003283 1.1e-18 96.7 78 61.5
Sabra05G0038400 Salix brachista HOM05D002930 ORTHO05D003283 1.1e-18 96.7 78 61.5
Aqoxy211s001 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 1.4e-18 96.3 78 57.7
Aqoxy2G03186 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 1.4e-18 96.3 78 57.7
HanXRQChr15g0466571 Helianthus annuus HOM05D002930 ORTHO05D003283 1.4e-18 96.3 75 60.0
Lj1g0027310 Lotus japonicus HOM05D002930 ORTHO05D003283 1.4e-18 96.3 78 55.1
Zm00001eb131990 Zea mays HOM05D002930 ORTHO05D003283 1.4e-18 96.3 81 56.8
Peaxi162Scf00941g00113 Petunia axillaris HOM05D002930 ORTHO05D003283 1.9e-18 95.9 87 56.3
Psat3g009520 Pisum sativum HOM05D002930 ORTHO05D003283 2.5e-18 95.5 76 57.9
Aqoxy5G00565 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 3.2e-18 95.1 78 55.1
Cc02_g32570 Coffea canephora HOM05D002930 ORTHO05D003283 3.2e-18 95.1 93 54.8
PSO302G0276 Papaver somniferum HOM05D002930 ORTHO05D003283 4.2e-18 94.7 78 57.7
Carub.0004s3076 Capsella rubella HOM05D002930 ORTHO05D003283 5.5e-18 94.4 78 59.0
Nitab4.5_0001323g0140 Nicotiana tabacum HOM05D002930 ORTHO05D003283 5.5e-18 94.4 78 60.3
CDE08G1131 Ceratophyllum demersum HOM05D002930 ORTHO05D003283 9.4e-18 93.6 78 57.7
TPR.G33213 Trifolium pratense HOM05D002930 ORTHO05D003283 9.4e-18 93.6 78 56.4
Aa31LG10G16860 Aethionema arabicum HOM05D002930 ORTHO05D003283 1.2e-17 93.2 78 60.3
ATR0626G265 Amborella trichopoda HOM05D002930 ORTHO05D003283 1.2e-17 93.2 78 56.4
Medtr7g113930 Medicago truncatula HOM05D002930 ORTHO05D003283 1.6e-17 92.8 78 56.4
Lalb_Chr04g0260851 Lupinus albus HOM05D002930 ORTHO05D003283 2.1e-17 92.4 78 55.1
Glyma.19G238300 Glycine max HOM05D002930 ORTHO05D003283 3.6e-17 91.7 78 56.4
DCAR_012455 Daucus carota HOM05D002930 ORTHO05D003283 4.7e-17 91.3 78 61.5
SGA_v2.0_scaffold172G39040 Striga asiatica HOM05D002930 ORTHO05D003283 6.1e-17 90.9 78 56.4
DCAR_018381 Daucus carota HOM05D002930 ORTHO05D003283 7.9e-17 90.5 78 59.0
SHI15440 Sapria himalayana HOM05D002930 ORTHO05D003283 1.4e-16 89.7 75 60.0
HPP92_017200 Vanilla planifolia HOM05D002930 ORTHO05D003283 1.4e-16 89.7 78 60.3
Lsat_1_v5_gn_9_1821 Lactuca sativa HOM05D002930 ORTHO05D003283 1.8e-16 89.4 87 52.9
HPP92_027329 Vanilla planifolia HOM05D002930 ORTHO05D003283 1.1e-15 86.7 78 59.0
CAN.G956.11 Capsicum annuum HOM05D002930 ORTHO05D003283 2.0e-15 85.9 83 54.2
SGA_v2.0_scaffold11G05785 Striga asiatica HOM05D002930 ORTHO05D003283 2.0e-15 85.9 78 55.1
PGR083G0736 Punica granatum HOM05D002930 ORTHO05D003283 4.4e-15 84.7 78 53.8
Sopen09g028930 Solanum pennellii HOM05D002930 ORTHO05D003283 7.4e-15 84.0 83 53.0
QL03p004191 Quercus lobata HOM05D002930 ORTHO05D003283 9.7e-15 83.6 77 55.8
Solyc09g074110.4 Solanum lycopersicum HOM05D002930 ORTHO05D003283 2.2e-14 82.4 83 51.8
QL03p004772 Quercus lobata HOM05D002930 ORTHO05D003283 3.1e-13 78.6 77 53.2
AUR62036777 Chenopodium quinoa HOM05D002930 ORTHO05D003283 4.1e-13 78.2 76 50.0
Pp3c3_17170 Physcomitrium patens HOM05D002930 ORTHO05D003283 3.8e-11 71.6 83 44.6
FAN15G2723 Fragaria x ananassa HOM05D002930 ORTHO05D003283 1.8e-08 62.8 36 77.8
Mapoly0023s0171 Marchantia polymorpha HOM05D002930 ORTHO05D003283 2.3e-08 62.4 80 42.5
Pp3c9_13300 Physcomitrium patens HOM05D002930 ORTHO05D003283 5.2e-08 61.2 80 41.2
AUR62033688 Chenopodium quinoa HOM05D002930 ORTHO05D003283 4.8e-06 54.7 44 56.8


User provided reference genes

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