Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 6.2e-191 670.6 338 100.0
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.5e-184 649.4 338 97.0
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.3e-184 648.3 338 97.0
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 9.1e-142 507.3 334 76.9
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 3.8e-140 501.9 333 77.2
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 5.0e-140 501.5 329 77.2
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.7e-133 479.2 335 73.1
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.9e-133 478.0 332 73.2
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 7.7e-133 477.6 335 72.8
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 2.7e-130 469.2 333 73.9
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 4.0e-113 412.1 335 63.6
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 5.8e-112 408.3 330 61.5
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 4.9e-111 405.2 335 63.3
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 1.9e-110 403.3 326 63.2
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 7.0e-110 401.4 330 61.8
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 4.6e-109 398.7 326 61.7
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 6.0e-109 398.3 328 61.6
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.0e-108 397.5 341 61.9
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 6.6e-108 394.8 330 60.0
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.1e-107 394.0 339 59.9
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 7.3e-107 391.3 326 60.7
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 7.3e-107 391.3 330 62.7
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 6.2e-106 388.3 332 59.6
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 3.1e-105 386.0 337 58.8
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 1.5e-104 383.6 325 59.7
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 3.2e-102 375.9 339 58.4
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 5.4e-102 375.2 332 59.6
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 6.0e-101 371.7 333 56.8
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 4.3e-99 365.5 336 57.4
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 7.3e-99 364.8 328 58.5
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 7.3e-99 364.8 334 58.1
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 9.5e-99 364.4 332 58.7
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.6e-98 363.6 332 58.4
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 1.6e-98 363.6 353 54.7
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 2.1e-98 363.2 334 55.1
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 2.8e-98 362.8 326 57.4
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 1.1e-97 360.9 327 58.1
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 1.4e-97 360.5 332 57.8
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 3.1e-97 359.4 327 58.1
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.0e-97 359.0 332 57.5
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 4.0e-97 359.0 333 55.3
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 5.2e-97 358.6 323 58.8
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 2.6e-96 356.3 328 54.6
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 4.4e-96 355.5 328 57.6
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 5.8e-96 355.1 330 54.2
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.8e-96 355.1 355 55.2
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 7.6e-96 354.8 340 55.9
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 2.2e-95 353.2 340 56.2
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 2.9e-95 352.8 326 56.1
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 3.8e-95 352.4 326 54.9
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 4.9e-95 352.1 323 57.3
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 2.7e-93 346.3 291 60.1
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 3.5e-93 345.9 329 55.6
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 4.6e-93 345.5 328 54.0
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 4.6e-93 345.5 329 55.0
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 6.0e-93 345.1 280 64.6
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 7.8e-93 344.7 331 53.8
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 1.0e-92 344.4 330 54.8
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 1.3e-92 344.0 336 54.8
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 5.1e-92 342.0 332 53.3
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.2e-90 337.4 338 52.4
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 2.1e-90 336.7 336 52.7
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 8.1e-90 334.7 328 53.4
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.8e-89 333.6 327 54.1
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 5.2e-89 332.0 329 52.0
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 8.9e-89 331.3 334 50.0
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 4.4e-88 328.9 324 52.8
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.4e-88 328.9 329 53.2
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.8e-88 328.6 327 53.8
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 9.9e-88 327.8 321 52.3
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 1.3e-87 327.4 327 52.6
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 1.7e-87 327.0 337 52.5
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 1.7e-87 327.0 334 50.9
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 1.7e-87 327.0 326 50.9
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 2.2e-87 326.6 339 52.2
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 6.4e-87 325.1 325 51.7
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 6.4e-87 325.1 320 51.6
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 1.1e-86 324.3 339 51.6
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.4e-86 323.9 308 56.8
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 1.4e-86 323.9 330 51.8
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 1.9e-86 323.6 335 48.7
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 2.4e-86 323.2 339 51.6
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 2.4e-86 323.2 327 52.6
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 5.4e-86 322.0 328 53.0
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 7.1e-86 321.6 338 51.2
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 9.3e-86 321.2 258 62.0
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.2e-85 320.9 334 49.1
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.2e-85 320.9 336 51.5
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 4.6e-85 318.9 300 56.3
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 7.8e-85 318.2 308 52.9
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 1.0e-84 317.8 337 50.7
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.0e-84 317.8 337 51.3
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 1.0e-84 317.8 331 50.8
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.3e-84 317.4 329 51.1
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 1.3e-84 317.4 314 55.4
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.7e-84 317.0 337 51.3
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 2.3e-84 316.6 314 54.1
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 3.0e-84 316.2 308 55.2
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 5.1e-84 315.5 328 51.8
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 6.6e-84 315.1 328 50.3
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 6.6e-84 315.1 310 54.8
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 6.6e-84 315.1 332 49.4
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 8.7e-84 314.7 332 49.7
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 8.7e-84 314.7 312 50.3
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 1.5e-83 313.9 319 55.5
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.5e-83 313.9 312 51.9
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 1.9e-83 313.5 310 54.5
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 1.9e-83 313.5 328 51.5
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 1.9e-83 313.5 251 62.5
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 4.3e-83 312.4 317 53.9
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 5.6e-83 312.0 340 52.1
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 9.6e-83 311.2 300 52.3
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 1.3e-82 310.8 277 57.8
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.3e-82 310.8 329 51.7
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 2.8e-82 309.7 285 56.1
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 2.8e-82 309.7 313 51.4
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 3.6e-82 309.3 324 50.3
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 6.2e-82 308.5 307 51.8
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 6.2e-82 308.5 307 51.5
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 8.1e-82 308.1 330 50.3
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 8.1e-82 308.1 330 50.3
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 1.1e-81 307.8 308 51.0
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 1.4e-81 307.4 297 55.2
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 1.4e-81 307.4 284 55.6
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 1.8e-81 307.0 278 59.0
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 4.0e-81 305.8 331 51.1
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 4.0e-81 305.8 304 52.3
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 4.5e-80 302.4 302 53.6
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 1.7e-79 300.4 326 50.9
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 2.2e-79 300.1 299 51.2
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 3.8e-79 299.3 329 50.2
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.8e-79 299.3 316 50.6
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 1.1e-78 297.7 300 50.3
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 1.1e-78 297.7 300 50.7
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 1.1e-78 297.7 300 50.3
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 4.2e-78 295.8 256 57.0
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 1.2e-77 294.3 310 52.3
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 3.5e-77 292.7 330 49.4
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 3.5e-77 292.7 330 49.4
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 2.8e-74 283.1 259 57.1
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 4.8e-74 282.3 365 46.3
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 4.0e-73 279.3 321 48.3
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 7.6e-72 275.0 285 52.6
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 3.2e-70 269.6 322 46.0
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 3.5e-69 266.2 299 46.8
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 4.3e-67 259.2 324 42.9
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 6.2e-66 255.4 242 54.1
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 2.4e-65 253.4 285 48.1
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 3.1e-65 253.1 294 46.3
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 4.5e-64 249.2 287 49.1
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 2.9e-63 246.5 242 55.4
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 4.9e-63 245.7 272 48.9
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 4.6e-61 239.2 251 47.4
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 3.0e-60 236.5 157 68.8
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 4.5e-56 222.6 161 62.1
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 1.2e-53 214.5 233 48.9
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.2e-50 203.8 154 62.3
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.5e-43 181.0 217 44.2
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 1.5e-43 181.0 283 42.4
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.5e-43 181.0 127 69.3
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 9.7e-43 178.3 243 43.2
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.2e-42 177.2 246 42.7
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 7.2e-38 162.2 227 42.3
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 8.0e-37 158.7 182 49.5
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 8.8e-36 155.2 225 43.6
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 2.8e-34 150.2 257 35.4
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.1e-30 138.3 88 73.9
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 8.0e-29 132.1 107 63.6
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.3e-28 130.6 82 76.8
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 5.2e-28 129.4 92 71.7
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 9.1e-25 118.6 75 74.7
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 6.5e-23 112.5 116 47.4
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 8.3e-18 95.5 77 57.1
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 9.1e-17 92.0 80 55.0
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 2.7e-08 63.9 56 51.8


User provided reference genes

Program Settings