Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 2.0e-147 525.8 277 100.0
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 6.1e-144 514.2 277 97.5
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 5.2e-143 511.1 277 96.8
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 3.5e-131 471.9 277 87.4
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 1.3e-130 469.9 274 88.3
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 1.7e-122 443.0 277 83.4
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.0e-122 442.2 277 82.3
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.0e-122 442.2 277 82.3
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 9.5e-121 437.2 277 81.6
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 3.6e-120 435.3 277 79.8
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 4.7e-120 434.9 277 79.1
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 6.2e-120 434.5 277 81.2
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.0e-119 433.7 277 80.9
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 1.4e-119 433.3 277 79.8
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 2.3e-119 432.6 277 80.1
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 5.2e-119 431.4 277 80.9
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 8.9e-119 430.6 277 79.4
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 2.6e-118 429.1 276 79.7
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 4.4e-118 428.3 272 80.9
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 4.4e-118 428.3 276 80.1
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 7.5e-118 427.6 274 79.2
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 9.8e-118 427.2 277 79.1
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.7e-117 426.4 288 78.5
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 2.4e-116 422.5 274 77.7
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 3.2e-116 422.2 274 77.0
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 5.4e-116 421.4 277 78.3
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 5.4e-116 421.4 274 78.8
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 1.6e-115 419.9 272 78.7
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 1.6e-115 419.9 274 77.4
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 2.0e-115 419.5 277 78.3
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 2.7e-115 419.1 274 76.6
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 6.0e-115 417.9 274 77.7
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 7.8e-115 417.5 278 79.1
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 1.0e-114 417.2 274 77.4
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 1.0e-114 417.2 274 76.6
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 1.0e-114 417.2 277 77.3
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 1.7e-114 416.4 274 76.6
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 5.0e-114 414.8 274 77.7
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 5.0e-114 414.8 273 78.0
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 6.6e-114 414.5 274 77.0
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 8.6e-114 414.1 274 76.6
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 1.5e-113 413.3 277 77.3
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 2.5e-113 412.5 275 79.3
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 2.5e-113 412.5 274 77.4
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 3.3e-113 412.1 274 76.6
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 4.3e-113 411.8 274 74.5
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 5.6e-113 411.4 274 76.6
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 7.3e-113 411.0 277 76.9
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 9.5e-113 410.6 273 75.5
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 1.2e-112 410.2 273 78.8
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 2.1e-112 409.5 277 76.9
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 2.1e-112 409.5 271 77.9
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 3.6e-112 408.7 277 76.5
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 3.6e-112 408.7 277 76.2
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 3.6e-112 408.7 274 74.5
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 4.7e-112 408.3 274 75.9
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 8.1e-112 407.5 274 77.0
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 1.1e-111 407.1 274 76.6
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 1.1e-111 407.1 273 77.7
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 1.8e-111 406.4 279 75.3
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 3.1e-111 405.6 277 75.8
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 3.1e-111 405.6 277 75.8
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 3.1e-111 405.6 277 75.8
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 3.1e-111 405.6 274 74.5
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 3.1e-111 405.6 270 77.0
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 6.8e-111 404.4 274 77.7
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 6.8e-111 404.4 277 75.5
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 8.9e-111 404.1 277 75.5
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 8.9e-111 404.1 277 75.5
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 1.5e-110 403.3 273 76.2
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 1.5e-110 403.3 273 76.2
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 2.0e-110 402.9 274 75.2
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 2.6e-110 402.5 274 75.9
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 2.6e-110 402.5 277 75.5
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 4.4e-110 401.7 277 75.5
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 7.5e-110 401.0 281 75.1
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 9.8e-110 400.6 277 75.5
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 9.8e-110 400.6 277 75.5
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 9.8e-110 400.6 277 75.5
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 1.3e-109 400.2 277 74.7
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 1.3e-109 400.2 304 70.1
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 1.3e-109 400.2 277 74.4
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 1.3e-109 400.2 293 72.4
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 1.7e-109 399.8 274 75.9
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 3.7e-109 398.7 277 74.7
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 6.4e-109 397.9 275 74.2
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 6.4e-109 397.9 277 74.4
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 8.3e-109 397.5 277 74.7
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.1e-108 397.1 278 73.7
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.9e-108 396.4 275 73.5
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 3.2e-108 395.6 284 73.9
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 4.1e-108 395.2 281 74.4
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 7.1e-108 394.4 273 75.1
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 1.3e-106 390.2 277 72.6
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 2.3e-106 389.4 275 74.2
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 6.6e-106 387.9 277 74.7
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.1e-105 387.1 275 74.5
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 3.3e-105 385.6 275 73.1
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 1.6e-104 383.3 319 65.8
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 9.9e-102 374.0 269 73.2
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 6.4e-101 371.3 336 62.5
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.1e-100 370.5 291 67.7
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 1.9e-100 369.8 269 72.5
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 6.0e-99 364.8 274 70.8
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 1.7e-98 363.2 370 57.0
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 3.0e-98 362.5 323 63.5
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 8.6e-98 360.9 257 72.0
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.1e-97 360.5 275 69.8
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 7.3e-97 357.8 272 69.1
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 1.6e-96 356.7 272 68.4
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 4.7e-96 355.1 269 69.1
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 1.1e-95 354.0 264 72.0
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 1.3e-93 347.1 264 67.8
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 3.3e-89 332.4 275 62.5
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 3.3e-89 332.4 271 62.4
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 4.0e-87 325.5 266 65.4
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 8.4e-85 317.8 213 76.5
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 1.9e-84 316.6 259 69.5
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.7e-83 312.8 489 43.1
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 3.5e-83 312.4 272 62.5
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 6.0e-83 311.6 489 43.1
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 1.1e-81 307.4 255 63.9
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 1.8e-79 300.1 267 61.0
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 9.0e-79 297.7 255 63.5
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.7e-77 293.5 264 59.5
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 1.7e-77 293.5 258 63.2
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 1.7e-77 293.5 282 57.4
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 2.2e-77 293.1 264 58.7
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 2.9e-77 292.7 282 57.8
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 3.8e-77 292.4 259 62.9
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 2.1e-75 286.6 282 57.4
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 4.6e-75 285.4 264 58.0
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 1.8e-74 283.5 282 57.1
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 1.8e-74 283.5 268 56.3
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 2.3e-74 283.1 282 57.4
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 4.8e-72 275.4 277 54.2
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 4.9e-69 265.4 164 81.7
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 1.1e-68 264.2 300 56.0
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 1.4e-68 263.8 267 53.9
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 3.5e-67 259.2 226 62.8
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 4.6e-67 258.8 280 55.0
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 1.5e-65 253.8 256 56.6
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 1.9e-60 236.9 140 84.3
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 2.7e-59 233.0 267 50.6
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.2e-54 217.6 274 48.9
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 1.1e-52 211.1 252 49.6
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 1.9e-52 210.3 267 48.3
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 1.5e-49 200.7 131 79.4
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.7e-45 187.2 164 65.2
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 2.2e-45 186.8 136 72.1
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.9e-44 183.7 137 71.5
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.6e-43 180.6 148 66.2
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 4.7e-43 179.1 415 34.0
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 2.3e-42 176.8 138 64.5
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 2.2e-40 170.2 228 47.4
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 4.5e-38 162.5 96 84.4
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.0e-37 161.4 130 65.4
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.9e-36 157.1 120 72.5
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.2e-30 137.9 123 60.2
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 2.0e-30 137.1 259 35.1
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 5.9e-30 135.6 139 56.1
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.7e-29 134.0 68 98.5
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.7e-29 134.0 68 98.5
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.9e-28 130.6 68 95.6
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.2e-27 127.9 68 94.1
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 6.1e-27 125.6 264 33.0
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 2.6e-25 120.2 291 29.6
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 8.3e-24 115.2 73 84.9
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.0e-22 110.5 167 44.3
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 1.0e-18 98.2 111 53.2
Gohir.D03G082900 Gossypium hirsutum HOM05D002585 ORTHO05D002917 4.4e-17 92.8 48 95.8
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 7.5e-17 92.0 53 81.1
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 7.5e-17 92.0 59 78.0
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 9.8e-17 91.7 51 92.2
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 1.3e-16 91.3 51 90.2
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 1.3e-16 91.3 51 90.2
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 2.2e-16 90.5 68 66.2
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 2.2e-16 90.5 71 67.6
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 2.8e-16 90.1 83 55.4
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 2.8e-16 90.1 51 90.2
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 6.3e-16 89.0 51 90.2
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 1.1e-15 88.2 69 63.8
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 5.4e-15 85.9 49 87.8
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 8.9e-10 68.6 68 51.5
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 5.4e-07 59.3 37 81.1
CAN.G102.1 Capsicum annuum HOM05D000541 ORTHO05D000137 7.8e-06 55.5 53 50.9


User provided reference genes

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