Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 6.8e-102 374.0 192 100.0
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 4.4e-101 371.3 192 99.0
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.9e-91 339.3 174 100.0
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 7.3e-88 327.4 198 84.8
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 9.6e-88 327.0 192 87.0
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 1.6e-87 326.2 192 86.5
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 1.6e-87 326.2 193 86.5
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 2.8e-87 325.5 192 85.9
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 3.6e-87 325.1 194 86.1
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 3.6e-87 325.1 194 85.6
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 8.1e-87 323.9 194 86.1
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 8.1e-87 323.9 192 87.0
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 1.1e-86 323.6 192 85.4
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 1.1e-86 323.6 194 85.6
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.8e-86 322.8 195 86.7
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 1.8e-86 322.8 194 85.1
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 3.1e-86 322.0 193 85.0
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 3.1e-86 322.0 192 84.4
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 9.0e-86 320.5 193 86.0
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 9.0e-86 320.5 194 85.6
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 1.5e-85 319.7 191 84.8
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 2.0e-85 319.3 194 85.6
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 2.0e-85 319.3 199 82.4
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 2.6e-85 318.9 194 83.0
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 2.6e-85 318.9 197 83.2
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 4.5e-85 318.2 192 83.9
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 7.6e-85 317.4 193 83.9
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 9.9e-85 317.0 198 81.8
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 1.3e-84 316.6 192 84.4
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 1.3e-84 316.6 192 83.9
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.3e-84 316.6 192 83.3
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.7e-84 316.2 192 82.3
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 1.7e-84 316.2 192 80.7
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 2.2e-84 315.8 192 82.3
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 3.8e-84 315.1 192 83.3
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 3.8e-84 315.1 192 84.4
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.8e-84 315.1 200 81.0
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.8e-84 315.1 200 81.0
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 3.8e-84 315.1 193 83.9
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 3.8e-84 315.1 197 82.2
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 4.9e-84 314.7 199 80.9
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 6.4e-84 314.3 194 81.4
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 1.4e-83 313.2 192 82.3
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 1.4e-83 313.2 193 83.4
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 2.4e-83 312.4 196 83.2
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 3.2e-83 312.0 201 79.1
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 4.2e-83 311.6 195 82.1
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 5.4e-83 311.2 192 81.8
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 7.1e-83 310.8 198 81.8
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 1.2e-82 310.1 200 80.0
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 1.6e-82 309.7 192 82.3
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 2.7e-82 308.9 194 79.9
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 2.7e-82 308.9 192 81.8
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 3.5e-82 308.5 192 81.8
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 7.9e-82 307.4 194 80.9
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 7.9e-82 307.4 192 80.7
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.3e-81 306.6 208 76.9
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.3e-81 306.6 193 81.9
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.3e-81 306.6 192 81.2
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 1.8e-81 306.2 199 78.9
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 2.3e-81 305.8 197 78.7
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 3.0e-81 305.4 204 76.0
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 3.9e-81 305.1 192 80.2
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 5.1e-81 304.7 193 79.3
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 8.7e-81 303.9 196 78.6
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 8.7e-81 303.9 201 78.6
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 8.7e-81 303.9 215 74.4
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 1.1e-80 303.5 194 79.4
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.5e-80 303.1 194 79.9
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.5e-80 303.1 194 79.9
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 2.5e-80 302.4 198 76.8
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 2.5e-80 302.4 192 81.2
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 3.3e-80 302.0 194 79.4
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 3.3e-80 302.0 201 75.6
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 9.6e-80 300.4 196 76.5
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 1.6e-79 299.7 191 78.0
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 2.8e-79 298.9 203 75.9
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 2.8e-79 298.9 193 78.2
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 2.8e-79 298.9 192 80.2
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 3.7e-79 298.5 196 78.1
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 6.2e-79 297.7 201 74.1
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 8.1e-79 297.4 200 76.5
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 8.1e-79 297.4 196 80.1
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 8.1e-79 297.4 203 74.9
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 1.1e-78 297.0 197 77.2
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 1.1e-78 297.0 197 77.2
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 1.4e-78 296.6 199 76.9
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 2.4e-78 295.8 193 78.2
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.4e-78 295.8 202 76.7
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 3.1e-78 295.4 192 78.6
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 4.0e-78 295.0 199 76.9
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 4.0e-78 295.0 199 76.9
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 4.0e-78 295.0 196 77.0
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 6.9e-78 294.3 206 75.2
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 1.2e-77 293.5 199 76.9
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.2e-77 293.5 199 76.9
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 2.0e-77 292.7 198 76.8
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 2.0e-77 292.7 199 74.9
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 2.0e-77 292.7 194 78.9
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.6e-77 292.4 201 73.1
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 9.9e-77 290.4 192 75.5
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 9.9e-77 290.4 198 75.3
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 9.9e-77 290.4 194 78.9
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 1.7e-76 289.7 199 74.4
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 2.2e-76 289.3 192 79.7
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 3.8e-76 288.5 199 74.4
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 3.8e-76 288.5 199 74.4
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 3.8e-76 288.5 192 78.6
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 3.8e-76 288.5 198 77.3
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 4.9e-76 288.1 199 74.4
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 4.9e-76 288.1 173 83.8
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 6.4e-76 287.7 241 65.1
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 1.9e-75 286.2 198 75.8
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 4.2e-75 285.0 186 79.0
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 1.6e-74 283.1 199 73.9
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 2.1e-74 282.7 198 74.2
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.0e-73 280.4 182 79.1
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 1.8e-73 279.6 202 72.3
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 3.9e-73 278.5 192 72.4
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 1.1e-72 276.9 181 79.0
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 2.5e-72 275.8 223 66.4
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 5.6e-72 274.6 200 70.5
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 7.4e-72 274.2 200 70.5
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 7.4e-72 274.2 211 69.2
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 1.4e-70 270.0 233 66.1
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 4.0e-70 268.5 175 78.9
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 6.9e-70 267.7 180 77.2
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 2.0e-69 266.2 197 69.0
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 2.6e-69 265.8 213 68.1
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 3.4e-69 265.4 201 71.1
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 7.6e-69 264.2 187 73.8
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.0e-68 263.8 196 69.4
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 9.3e-67 257.3 181 70.2
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 1.6e-66 256.5 175 78.3
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 2.7e-66 255.8 204 67.6
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 3.9e-65 251.9 213 64.3
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 1.5e-64 250.0 182 72.0
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 3.3e-64 248.8 185 67.0
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 9.7e-64 247.3 187 70.1
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 9.7e-64 247.3 181 69.6
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 9.0e-62 240.7 198 64.1
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 3.6e-58 228.8 192 64.1
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 1.8e-57 226.5 201 62.7
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 2.9e-52 209.1 153 71.2
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 2.3e-49 199.5 120 86.7
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 2.4e-46 189.5 118 80.5
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 4.2e-43 178.7 175 56.6
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 1.7e-39 166.8 99 86.9
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.7e-39 166.8 99 86.9
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 2.6e-37 159.5 99 82.8
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 1.7e-36 156.8 97 80.4
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 6.5e-36 154.8 188 54.8
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 7.7e-29 131.3 97 72.2
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.7e-28 130.2 70 92.9
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 8.5e-28 127.9 195 46.7
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.9e-27 126.7 79 78.5
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 3.2e-27 125.9 100 69.0
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 4.7e-26 122.1 77 72.7
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 1.7e-23 113.6 193 39.4
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 2.2e-23 113.2 188 38.8
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 2.4e-22 109.8 78 71.8
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 3.1e-22 109.4 99 63.6
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 4.1e-22 109.0 72 80.6
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 2.5e-19 99.8 98 61.2
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 1.4e-17 94.0 98 59.2
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 7.5e-16 88.2 63 66.7
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.3e-15 87.4 56 71.4
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 2.4e-14 83.2 173 35.3
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.9e-12 76.3 51 74.5
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 3.8e-12 75.9 53 73.6
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 3.3e-11 72.8 60 60.0
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.4e-08 62.8 72 52.8


User provided reference genes

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