Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 9.9e-164 580.1 302 100.0
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 1.1e-159 566.6 302 97.4
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 1.1e-159 566.6 302 97.4
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 3.5e-129 465.3 304 79.6
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 6.3e-126 454.5 304 78.6
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 2.5e-119 432.6 296 76.4
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 2.9e-115 419.1 296 75.3
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 2.8e-110 402.5 285 71.2
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 1.4e-109 400.2 308 68.5
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 2.4e-109 399.4 304 70.7
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 1.5e-108 396.7 307 67.8
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 4.5e-108 395.2 292 70.2
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 7.7e-108 394.4 307 64.5
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 1.1e-106 390.6 302 67.5
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 9.4e-106 387.5 307 66.8
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 1.2e-105 387.1 295 69.8
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 1.6e-105 386.7 302 67.5
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 1.6e-105 386.7 300 68.3
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 6.1e-105 384.8 296 64.9
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 1.4e-104 383.6 290 66.2
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 1.8e-104 383.3 300 64.0
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 2.3e-104 382.9 301 68.8
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 4.0e-104 382.1 287 68.6
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 4.4e-103 378.6 308 64.0
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 7.4e-103 377.9 290 66.2
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 2.8e-102 375.9 290 66.6
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 3.7e-102 375.6 296 66.6
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 4.8e-102 375.2 298 66.4
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 6.3e-102 374.8 305 63.6
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 5.3e-101 371.7 293 66.6
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 5.3e-101 371.7 295 68.5
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 5.3e-101 371.7 295 68.5
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 9.1e-101 370.9 300 64.3
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 9.1e-101 370.9 298 66.4
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 1.2e-100 370.5 286 67.8
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 1.2e-100 370.5 302 62.6
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 3.5e-100 369.0 301 65.4
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 5.9e-100 368.2 305 65.9
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 5.9e-100 368.2 295 68.1
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 7.7e-100 367.9 295 68.1
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 7.7e-100 367.9 298 66.1
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 1.3e-99 367.1 306 61.8
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.7e-99 366.7 295 67.8
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 1.7e-99 366.7 299 65.9
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 3.8e-99 365.5 292 59.9
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 6.5e-99 364.8 290 63.8
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 1.1e-98 364.0 308 62.0
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 1.9e-98 363.2 304 63.2
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 2.5e-98 362.8 297 66.0
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 3.2e-98 362.5 297 64.3
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 7.2e-98 361.3 303 66.0
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 9.4e-98 360.9 306 60.1
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 9.4e-98 360.9 282 66.7
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.2e-97 360.5 298 66.1
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.2e-97 360.5 298 66.1
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 1.6e-97 360.1 307 64.5
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 3.6e-97 359.0 313 63.3
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 3.6e-97 359.0 309 63.8
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 3.6e-97 359.0 301 65.1
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 4.7e-97 358.6 299 65.9
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 6.1e-97 358.2 301 65.8
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 1.0e-96 357.5 311 63.7
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 1.8e-96 356.7 307 65.1
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 1.8e-96 356.7 311 63.7
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 4.0e-96 355.5 294 66.7
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 6.8e-96 354.8 302 65.9
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 6.8e-96 354.8 306 62.7
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 8.8e-96 354.4 313 63.9
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 8.8e-96 354.4 313 63.9
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 8.8e-96 354.4 300 63.3
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 8.8e-96 354.4 295 62.0
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 2.0e-95 353.2 289 63.3
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 2.6e-95 352.8 284 65.5
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 5.7e-95 351.7 295 64.7
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 9.8e-95 350.9 312 63.1
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 2.2e-94 349.7 303 61.1
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 1.1e-93 347.4 306 61.8
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 2.4e-93 346.3 290 64.5
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 4.1e-93 345.5 307 63.2
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 4.1e-93 345.5 267 68.2
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 2.0e-92 343.2 286 62.9
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 3.5e-92 342.4 296 64.5
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 5.9e-92 341.7 299 63.9
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 7.7e-92 341.3 294 61.6
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 1.7e-91 340.1 284 63.4
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 2.9e-91 339.3 298 63.1
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 3.8e-91 339.0 303 60.4
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 8.5e-91 337.8 300 63.3
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.1e-90 337.4 305 62.3
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 2.5e-90 336.3 302 60.3
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 9.4e-90 334.3 308 60.7
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 2.7e-89 332.8 307 58.6
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 4.7e-89 332.0 289 63.3
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 3.0e-88 329.3 276 63.4
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 4.0e-88 328.9 297 59.3
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 6.8e-88 328.2 282 61.7
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 2.8e-86 322.8 363 52.6
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 3.7e-86 322.4 311 59.2
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 1.1e-85 320.9 308 59.7
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 1.8e-85 320.1 298 60.7
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 3.1e-85 319.3 299 56.5
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 5.4e-85 318.5 308 58.8
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 5.4e-85 318.5 252 67.5
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 1.2e-84 317.4 267 64.0
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 3.5e-84 315.8 233 71.2
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 1.1e-82 310.8 283 60.4
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 1.5e-82 310.5 289 59.2
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 2.1e-81 306.6 267 61.8
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 3.6e-81 305.8 286 58.0
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 6.1e-81 305.1 286 53.1
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 1.0e-80 304.3 299 53.2
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 1.4e-80 303.9 295 55.9
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 8.9e-80 301.2 310 57.4
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 5.7e-79 298.5 296 52.4
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 1.3e-78 297.4 294 52.0
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 7.8e-76 288.1 303 57.1
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 4.0e-72 275.8 233 60.5
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 5.2e-72 275.4 228 65.4
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 9.2e-69 264.6 272 54.4
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 1.2e-65 254.2 302 52.0
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 6.8e-64 248.4 279 50.5
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 3.4e-63 246.1 292 49.3
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 4.1e-61 239.2 213 58.7
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 2.6e-55 219.9 197 58.4
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 2.4e-53 213.4 220 49.5
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 4.7e-49 199.1 169 62.1
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 8.4e-46 188.3 201 50.7
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 8.1e-41 171.8 258 37.2
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 7.6e-39 165.2 287 39.7
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.4e-32 144.4 126 60.3
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.4e-32 144.4 126 60.3
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 1.2e-31 141.4 100 69.0
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 5.8e-31 139.0 147 54.4
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 4.8e-25 119.4 196 32.1
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 1.5e-23 114.4 202 35.6
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 2.9e-22 110.2 68 72.1
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 4.9e-22 109.4 166 35.5
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.6e-20 104.4 66 69.7
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 1.8e-19 100.9 94 61.7
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 1.6e-17 94.4 64 71.9
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 6.3e-17 92.4 62 72.6
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 9.0e-16 88.6 77 55.8
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.7e-14 84.3 119 47.9
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 2.7e-12 77.0 134 44.8
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 3.9e-11 73.2 50 68.0
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 3.9e-11 73.2 57 63.2
unitig_26.g9167 Utricularia gibba HOM05D004932 ORTHO05D005622 3.9e-11 73.2 96 50.0
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 7.4e-10 68.9 45 62.2
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 1.6e-09 67.8 39 76.9
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 2.8e-09 67.0 45 62.2
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 6.3e-09 65.9 58 58.6


User provided reference genes

Program Settings