Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A06G210900 Gossypium hirsutum HOM05D000668 ORTHO05D000516 4.5e-52 207.6 102 100.0
Gorai.010G256100 Gossypium raimondii HOM05D000668 ORTHO05D047988 4.7e-33 144.4 95 73.7
Gohir.D06G210200 Gossypium hirsutum HOM05D000668 ORTHO05D047988 1.8e-32 142.5 95 73.7
Gohir.D06G210300 Gossypium hirsutum HOM05D000668 ORTHO05D000516 1.8e-16 89.4 102 51.0
Gohir.A06G210700 Gossypium hirsutum HOM05D000668 ORTHO05D000516 5.2e-16 87.8 100 51.0
Gorai.010G256000 Gossypium raimondii HOM05D000668 ORTHO05D000516 5.8e-15 84.3 99 50.5
Duzib160G0756 Durio zibethinus HOM05D000668 ORTHO05D000516 1.6e-12 76.3 96 41.7
Gohir.A06G210800 Gossypium hirsutum HOM05D000668 ORTHO05D000516 1.0e-11 73.6 101 47.5
Gorai.010G154800 Gossypium raimondii HOM05D000668 ORTHO05D000516 1.3e-11 73.2 95 42.1
Gorai.010G154600 Gossypium raimondii HOM05D000668 ORTHO05D000516 1.7e-11 72.8 95 40.0
Gohir.A06G128800 Gossypium hirsutum HOM05D000668 ORTHO05D000516 3.0e-11 72.0 95 40.0
Sabra04G0028000 Salix brachista HOM05D000668 ORTHO05D000516 3.0e-11 72.0 94 43.6
Gohir.A06G128900 Gossypium hirsutum HOM05D000668 ORTHO05D000516 3.9e-11 71.6 95 40.0
Potri.004G044900 Populus trichocarpa HOM05D000668 ORTHO05D000516 5.0e-11 71.2 99 41.4
Potri.004G045000 Populus trichocarpa HOM05D000668 ORTHO05D000516 5.0e-11 71.2 99 41.4
Gohir.D06G132900 Gossypium hirsutum HOM05D000668 ORTHO05D000516 1.5e-10 69.7 95 41.1
Duzib235G0068 Durio zibethinus HOM05D000668 ORTHO05D000516 3.3e-10 68.6 94 40.4
Thecc.06G185300 Theobroma cacao HOM05D000668 ORTHO05D000516 5.6e-10 67.8 94 40.4
Duzib192G0789 Durio zibethinus HOM05D000668 ORTHO05D000516 1.2e-09 66.6 97 39.2
Gohir.D06G132700 Gossypium hirsutum HOM05D000668 ORTHO05D000516 1.2e-09 66.6 95 38.9
Sabra04G0028100 Salix brachista HOM05D000668 ORTHO05D000516 1.6e-09 66.2 94 42.6
PGR004G2829 Punica granatum HOM05D000668 ORTHO05D000516 2.1e-09 65.9 94 37.2
COL.COLO4_31453 Corchorus olitorius HOM05D000668 ORTHO05D000516 2.8e-09 65.5 92 40.2
Hma1.2p1_0208F.1_g088210 Hydrangea macrophylla HOM05D000668 ORTHO05D000516 6.2e-09 64.3 60 51.7
TWI39G1094 Tripterygium wilfordii HOM05D000668 ORTHO05D000516 1.1e-08 63.5 91 44.0
MD13G1168800 Malus domestica HOM05D000668 ORTHO05D000516 2.3e-08 62.4 96 33.3
SHI01703 Sapria himalayana HOM05D000668 ORTHO05D000516 2.3e-08 62.4 46 54.3
COL.COLO4_31454 Corchorus olitorius HOM05D000668 ORTHO05D000516 3.1e-08 62.0 92 38.0
Manes.14G142000 Manihot esculenta HOM05D000668 ORTHO05D000516 3.1e-08 62.0 95 40.0
TAR624G0049 Trochodendron aralioides HOM05D000668 ORTHO05D000516 3.1e-08 62.0 99 39.4
Atru.chr2.27 Acer truncatum HOM05D000668 ORTHO05D000516 5.2e-08 61.2 86 38.4
Oeu030342.1 Olea europaea HOM05D000668 ORTHO05D000516 6.8e-08 60.8 64 37.5
Hma1.2p1_0319F.1_g123790 Hydrangea macrophylla HOM05D000668 ORTHO05D000516 8.9e-08 60.5 96 38.5
Lalb_Chr18g0059541 Lupinus albus HOM05D000668 ORTHO05D000516 8.9e-08 60.5 94 36.2
TWI38G1881 Tripterygium wilfordii HOM05D000668 ORTHO05D000516 8.9e-08 60.5 94 39.4
Dinv40573 Davidia involucrata HOM05D000668 ORTHO05D000516 1.5e-07 59.7 105 40.0
PGR042G3930 Punica granatum HOM05D000668 ORTHO05D000516 1.5e-07 59.7 94 36.2
Actinidia05645 Actinidia chinensis HOM05D000668 ORTHO05D000516 2.0e-07 59.3 101 38.6
Glyma.07G198100 Glycine max HOM05D000668 ORTHO05D000516 2.0e-07 59.3 94 35.1
Glyma.13G178300 Glycine max HOM05D000668 ORTHO05D000516 2.6e-07 58.9 94 37.2
Lsat_1_v5_gn_5_53261 Lactuca sativa HOM05D000668 ORTHO05D000516 2.6e-07 58.9 61 45.9
Lalb_Chr15g0089761 Lupinus albus HOM05D000668 ORTHO05D000516 2.6e-07 58.9 94 35.1
Dinv17323 Davidia involucrata HOM05D000668 ORTHO05D000516 5.8e-07 57.8 98 35.7
Medtr4g119860 Medicago truncatula HOM05D000668 ORTHO05D000516 5.8e-07 57.8 99 38.4
Oeu043356.1 Olea europaea HOM05D000668 ORTHO05D000516 5.8e-07 57.8 60 38.3
TPR.G39809 Trifolium pratense HOM05D000668 ORTHO05D000516 5.8e-07 57.8 50 50.0
Hma1.2p1_1407F.1_g281520 Hydrangea macrophylla HOM05D000668 ORTHO05D000516 7.5e-07 57.4 98 38.8
EL10Ac4g09920 Beta vulgaris HOM05D000668 ORTHO05D000516 9.8e-07 57.0 58 43.1
Ca_21495_v3 Cicer arietinum L. HOM05D000668 ORTHO05D000516 9.8e-07 57.0 50 50.0
Lalb_Chr07g0177711 Lupinus albus HOM05D000668 ORTHO05D000516 9.8e-07 57.0 50 48.0
Lalb_Chr13g0303591 Lupinus albus HOM05D000668 ORTHO05D000516 9.8e-07 57.0 98 33.7
Cpa.g.sc48.92 Carica papaya HOM05D000668 ORTHO05D000516 1.3e-06 56.6 49 49.0
Hma1.2p1_0691F.1_g204140 Hydrangea macrophylla HOM05D000668 ORTHO05D000516 1.3e-06 56.6 71 46.5
RcHm_v2.0_Chr4g0422211 Rosa chinensis HOM05D000668 ORTHO05D000516 1.3e-06 56.6 60 46.7
THA.LOC104812611 Tarenaya hassleriana HOM05D000668 ORTHO05D000516 1.3e-06 56.6 95 38.9
TAR627G0254 Trochodendron aralioides HOM05D000668 ORTHO05D000516 1.3e-06 56.6 55 50.9
TAR627G1157 Trochodendron aralioides HOM05D000668 ORTHO05D000516 1.3e-06 56.6 55 50.9
Eucgr.E03266 Eucalyptus grandis HOM05D000668 ORTHO05D000516 1.7e-06 56.2 94 34.0
MD16G1169200 Malus domestica HOM05D000668 ORTHO05D000516 1.7e-06 56.2 82 35.4
Prupe.1G137000 Prunus persica HOM05D000668 ORTHO05D000516 2.2e-06 55.8 89 34.8
unitig_699.g19230 Utricularia gibba HOM05D000668 ORTHO05D000516 2.2e-06 55.8 58 43.1
ATR0807G002 Amborella trichopoda HOM05D000668 ORTHO05D000516 2.9e-06 55.5 96 35.4
THA.LOC104821723 Tarenaya hassleriana HOM05D000668 ORTHO05D000516 2.9e-06 55.5 58 44.8
TWI38G1967 Tripterygium wilfordii HOM05D000668 ORTHO05D000516 2.9e-06 55.5 93 36.6
VMungo0251G1295 Vigna mungo HOM05D000668 ORTHO05D000516 2.9e-06 55.5 92 32.6
Actinidia35563 Actinidia chinensis HOM05D000668 ORTHO05D000516 3.7e-06 55.1 62 43.5
ECA240G1238 Erigeron canadensis HOM05D000668 ORTHO05D000516 3.7e-06 55.1 50 44.0
Glyma.15G075300 Glycine max HOM05D000668 ORTHO05D000516 3.7e-06 55.1 107 35.5
Hma1.2p1_0736F.1_g210730 Hydrangea macrophylla HOM05D000668 ORTHO05D000516 3.7e-06 55.1 107 38.3
MBI07_g30202_MAGBIO Magnolia biondii HOM05D000668 ORTHO05D000516 3.7e-06 55.1 104 34.6
Peaxi162Scf00071g00616 Petunia axillaris HOM05D000668 ORTHO05D000516 3.7e-06 55.1 47 46.8
Oeu012116.1 Olea europaea HOM05D000668 ORTHO05D000516 4.9e-06 54.7 65 41.5
PGR083G2443 Punica granatum HOM05D000668 ORTHO05D000516 4.9e-06 54.7 90 35.6
arahy.Tifrunner.gnm1.ann1.5C4XQ1 Arachis hypogaea HOM05D000668 ORTHO05D000516 6.4e-06 54.3 61 41.0
CSS0039658 Camellia sinensis var. sinensis HOM05D000668 ORTHO05D000516 6.4e-06 54.3 62 43.5
CANSAT78G0305 Cannabis sativa HOM05D000668 ORTHO05D000516 6.4e-06 54.3 98 36.7
Carub.0001s2671 Capsella rubella HOM05D000668 ORTHO05D000516 6.4e-06 54.3 93 38.7
Eucgr.B01916 Eucalyptus grandis HOM05D000668 ORTHO05D000516 6.4e-06 54.3 95 37.9
FAN16G0140 Fragaria x ananassa HOM05D000668 ORTHO05D000516 6.4e-06 54.3 98 34.7
MD03G1284900 Malus domestica HOM05D000668 ORTHO05D000516 6.4e-06 54.3 62 41.9
Phvul.003G105300 Phaseolus vulgaris HOM05D000668 ORTHO05D000516 6.4e-06 54.3 57 47.4
BcaB03g12115 Brassica carinata HOM05D000668 ORTHO05D000516 8.3e-06 53.9 47 48.9
BcaB07g32437 Brassica carinata HOM05D000668 ORTHO05D000516 8.3e-06 53.9 47 48.9
BcaC01g00033 Brassica carinata HOM05D000668 ORTHO05D000516 8.3e-06 53.9 47 48.9
BcaC05g26832 Brassica carinata HOM05D000668 ORTHO05D000516 8.3e-06 53.9 47 48.9
BcaC06g35346 Brassica carinata HOM05D000668 ORTHO05D000516 8.3e-06 53.9 47 48.9
A07p11380 Brassica napus HOM05D000668 ORTHO05D000516 8.3e-06 53.9 93 37.6
A08p25710 Brassica napus HOM05D000668 ORTHO05D000516 8.3e-06 53.9 47 48.9
A09p37800 Brassica napus HOM05D000668 ORTHO05D000516 8.3e-06 53.9 47 48.9
C03p74990 Brassica napus HOM05D000668 ORTHO05D000516 8.3e-06 53.9 47 48.9
C05p27080 Brassica napus HOM05D000668 ORTHO05D000516 8.3e-06 53.9 47 48.9
C07p17160 Brassica napus HOM05D000668 ORTHO05D000516 8.3e-06 53.9 47 48.9
BolC3t19750H Brassica oleracea HOM05D000668 ORTHO05D000516 8.3e-06 53.9 47 48.9
BolC5t31427H Brassica oleracea HOM05D000668 ORTHO05D000516 8.3e-06 53.9 47 48.9
BolC7t42221H Brassica oleracea HOM05D000668 ORTHO05D000516 8.3e-06 53.9 47 48.9
BraA07t28926Z Brassica rapa HOM05D000668 ORTHO05D000516 8.3e-06 53.9 93 37.6
BraA08t34521Z Brassica rapa HOM05D000668 ORTHO05D000516 8.3e-06 53.9 47 48.9
BraA09t39292Z Brassica rapa HOM05D000668 ORTHO05D000516 8.3e-06 53.9 47 48.9
Cpa.g.sc9.207 Carica papaya HOM05D000668 ORTHO05D000516 8.3e-06 53.9 96 35.4
CiPaw.10G050000 Carya illinoinensis HOM05D000668 ORTHO05D000516 8.3e-06 53.9 92 41.3
DCAR_018328 Daucus carota HOM05D000668 ORTHO05D000516 8.3e-06 53.9 45 53.3
DCAR_030529 Daucus carota HOM05D000668 ORTHO05D000516 8.3e-06 53.9 47 46.8
Thhalv10009158m.g Eutrema salsugineum HOM05D000668 ORTHO05D000516 8.3e-06 53.9 47 48.9
Gorai.004G142100 Gossypium raimondii HOM05D000668 ORTHO05D000516 8.3e-06 53.9 45 48.9
Lalb_Chr12g0196571 Lupinus albus HOM05D000668 ORTHO05D000516 8.3e-06 53.9 47 48.9
MD11G1304400 Malus domestica HOM05D000668 ORTHO05D000516 8.3e-06 53.9 59 40.7
Sabra05G0031300 Salix brachista HOM05D000668 ORTHO05D000516 8.3e-06 53.9 59 40.7
SalBow7G1520 Salvia bowleyana HOM05D000668 ORTHO05D000516 8.3e-06 53.9 62 43.5
Sp1g24470 Schrenkiella parvula HOM05D000668 ORTHO05D000516 8.3e-06 53.9 47 48.9


User provided reference genes

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