Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 6.4e-77 290.8 162 100.0
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 9.6e-73 276.9 162 95.7
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 2.1e-51 206.1 145 71.7
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 1.1e-33 147.1 110 90.0
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 4.8e-32 141.7 148 57.4
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 1.2e-30 137.1 153 54.9
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 3.2e-28 129.0 83 80.7
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 1.4e-26 123.6 81 81.5
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 7.7e-22 107.8 148 46.6
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 3.8e-21 105.5 84 63.1
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 3.2e-20 102.4 86 64.0
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 3.2e-20 102.4 77 71.4
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 7.2e-20 101.3 83 62.7
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 7.2e-20 101.3 77 68.8
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 9.4e-20 100.9 81 64.2
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 1.2e-19 100.5 81 61.7
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 1.6e-19 100.1 81 65.4
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 2.1e-19 99.8 86 61.6
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 2.7e-19 99.4 81 64.2
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 3.6e-19 99.0 85 62.4
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 4.7e-19 98.6 83 60.2
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.0e-18 97.4 153 41.8
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 1.8e-18 96.7 84 61.9
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 8.8e-18 94.4 78 65.4
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 1.5e-17 93.6 76 67.1
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 1.5e-17 93.6 86 57.0
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 2.0e-17 93.2 77 67.5
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 2.6e-17 92.8 85 60.0
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 2.6e-17 92.8 85 60.0
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 3.4e-17 92.4 80 61.2
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 3.4e-17 92.4 76 64.5
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 3.4e-17 92.4 81 61.7
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 5.7e-17 91.7 81 61.7
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 5.7e-17 91.7 84 59.5
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 7.5e-17 91.3 80 61.2
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.3e-16 90.5 81 60.5
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 1.7e-16 90.1 85 54.1
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 2.2e-16 89.7 77 62.3
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 2.8e-16 89.4 84 58.3
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 3.7e-16 89.0 81 60.5
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 3.7e-16 89.0 81 60.5
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 3.7e-16 89.0 85 58.8
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 3.7e-16 89.0 81 61.7
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 4.8e-16 88.6 76 59.2
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 4.8e-16 88.6 81 58.0
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 4.8e-16 88.6 85 56.5
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 4.8e-16 88.6 76 60.5
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 4.8e-16 88.6 81 54.3
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 6.3e-16 88.2 129 45.0
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 6.3e-16 88.2 96 54.2
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 8.3e-16 87.8 74 60.8
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 8.3e-16 87.8 74 60.8
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 8.3e-16 87.8 74 60.8
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 8.3e-16 87.8 74 60.8
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 1.1e-15 87.4 82 58.5
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 1.1e-15 87.4 75 66.7
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 1.1e-15 87.4 75 60.0
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.4e-15 87.0 80 62.5
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 1.4e-15 87.0 82 62.2
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.4e-15 87.0 76 59.2
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 1.8e-15 86.7 81 55.6
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 1.8e-15 86.7 85 55.3
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 1.8e-15 86.7 81 55.6
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 1.8e-15 86.7 76 59.2
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 2.4e-15 86.3 75 60.0
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 4.1e-15 85.5 81 55.6
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 4.1e-15 85.5 74 59.5
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 5.4e-15 85.1 79 60.8
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 5.4e-15 85.1 81 56.8
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 5.4e-15 85.1 86 57.0
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 5.4e-15 85.1 85 54.1
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 5.4e-15 85.1 79 62.0
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 7.0e-15 84.7 78 59.0
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 7.0e-15 84.7 82 57.3
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 7.0e-15 84.7 79 60.8
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 7.0e-15 84.7 76 57.9
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 7.0e-15 84.7 79 57.0
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 9.1e-15 84.3 78 60.3
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 1.2e-14 84.0 77 59.7
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 1.2e-14 84.0 77 59.7
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 1.2e-14 84.0 85 55.3
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.2e-14 84.0 79 60.8
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 1.2e-14 84.0 100 53.0
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 1.6e-14 83.6 81 54.3
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 1.6e-14 83.6 79 57.0
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 1.6e-14 83.6 79 60.8
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 2.0e-14 83.2 85 58.8
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 2.7e-14 82.8 78 61.5
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 2.7e-14 82.8 81 56.8
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 3.5e-14 82.4 74 56.8
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.5e-14 82.4 82 56.1
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 4.5e-14 82.0 87 54.0
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 5.9e-14 81.6 75 60.0
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 5.9e-14 81.6 79 51.9
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 7.7e-14 81.3 82 56.1
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 7.7e-14 81.3 79 59.5
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.0e-13 80.9 81 58.0
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 1.0e-13 80.9 75 61.3
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 1.0e-13 80.9 75 61.3
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.7e-13 80.1 80 56.2
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.7e-13 80.1 74 59.5
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 1.7e-13 80.1 78 53.8
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 2.2e-13 79.7 78 59.0
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 2.2e-13 79.7 78 59.0
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 2.9e-13 79.3 81 54.3
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 3.8e-13 79.0 76 56.6
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 6.5e-13 78.2 74 52.7
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 6.5e-13 78.2 78 53.8
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 6.5e-13 78.2 74 56.8
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 8.5e-13 77.8 76 56.6
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.1e-12 77.4 74 56.8
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 1.5e-12 77.0 75 57.3
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 1.5e-12 77.0 80 53.8
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 1.9e-12 76.6 76 56.6
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 1.9e-12 76.6 115 43.5
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 7.2e-12 74.7 77 57.1
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 7.2e-12 74.7 80 52.5
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.2e-11 73.9 77 54.5
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 3.6e-11 72.4 75 54.7
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 4.7e-11 72.0 75 56.0
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 4.7e-11 72.0 75 53.3
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 4.7e-11 72.0 75 53.3
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 6.1e-11 71.6 77 51.9
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.0e-10 70.9 77 50.6
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 3.0e-10 69.3 84 46.4
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 3.0e-10 69.3 77 50.6
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 4.0e-10 68.9 60 58.3
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 8.8e-10 67.8 109 41.3
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 8.8e-10 67.8 83 51.8
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 1.5e-09 67.0 53 69.8
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 3.4e-09 65.9 75 52.0
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 5.7e-09 65.1 75 53.3
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 7.5e-09 64.7 54 59.3
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.3e-08 63.9 45 75.6
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.3e-08 63.9 45 75.6
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 1.7e-08 63.5 83 49.4
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 4.9e-08 62.0 46 71.7
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 4.9e-08 62.0 68 51.5
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 6.3e-08 61.6 59 50.8
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 1.4e-07 60.5 54 63.0
Gohir.A06G172002 Gossypium hirsutum HOM05D004607 ORTHO05D005836 2.4e-07 59.7 25 96.0
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 1.2e-06 57.4 83 44.6
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 1.2e-06 57.4 49 63.3
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 1.2e-06 57.4 49 63.3
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 7.7e-06 54.7 73 43.8


User provided reference genes

Program Settings