Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A06G098210 Gossypium hirsutum HOM05D004884 ORTHO05D005873 4.1e-47 191.0 95 100.0
Gorai.010G114700 Gossypium raimondii HOM05D004884 ORTHO05D005873 6.1e-27 124.0 85 77.6
Gohir.D06G099800 Gossypium hirsutum HOM05D004884 ORTHO05D005873 8.0e-27 123.6 85 77.6
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 3.7e-24 114.8 63 85.7
CDE06G1547 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 6.3e-24 114.0 88 64.8
AUR62012381 Chenopodium quinoa HOM05D004884 ORTHO05D005873 7.0e-23 110.5 85 62.4
ClCG05G016940 Citrullus lanatus HOM05D004884 ORTHO05D005873 1.6e-22 109.4 63 81.0
MELO3C003694.2 Cucumis melo HOM05D004884 ORTHO05D005873 1.6e-22 109.4 63 81.0
CsaV3_3G046450 Cucumis sativus L. HOM05D004884 ORTHO05D005873 2.0e-22 109.0 63 81.0
Sed0027624 Sechium edule HOM05D004884 ORTHO05D005873 2.7e-22 108.6 63 81.0
PSO455G0277 Papaver somniferum HOM05D004884 ORTHO05D005873 3.5e-22 108.2 63 82.5
MBI04_g07835_MAGBIO Magnolia biondii HOM05D004884 ORTHO05D005873 4.5e-22 107.8 85 64.7
TAR636G0424 Trochodendron aralioides HOM05D004884 ORTHO05D005873 4.5e-22 107.8 63 79.4
Sed0022166 Sechium edule HOM05D004884 ORTHO05D005873 5.9e-22 107.5 63 81.0
Aqoxy1G02408 Aquilegia oxysepala HOM05D004884 ORTHO05D005873 1.0e-21 106.7 63 79.4
PSO170G2441 Papaver somniferum HOM05D004884 ORTHO05D005873 1.0e-21 106.7 63 81.0
Sc23g0006790 Simmondsia chinensis HOM05D004884 ORTHO05D005873 1.0e-21 106.7 85 62.4
Cfa013154 Carpinus fangiana HOM05D004884 ORTHO05D005873 1.3e-21 106.3 63 79.4
CiPaw.08G011500 Carya illinoinensis HOM05D004884 ORTHO05D005873 1.7e-21 105.9 63 79.4
COL.COLO4_12946 Corchorus olitorius HOM05D004884 ORTHO05D005873 1.7e-21 105.9 63 79.4
QL02p021869 Quercus lobata HOM05D004884 ORTHO05D005873 1.7e-21 105.9 63 79.4
Duzib235G0621 Durio zibethinus HOM05D004884 ORTHO05D005873 2.2e-21 105.5 63 77.8
Glyma.08G211500 Glycine max HOM05D004884 ORTHO05D005873 2.2e-21 105.5 63 79.4
Nn2g12037 Nelumbo nucifera HOM05D004884 ORTHO05D005873 2.2e-21 105.5 85 63.5
Thecc.06G021400 Theobroma cacao HOM05D004884 ORTHO05D005873 2.2e-21 105.5 63 77.8
VMungo0331G0880 Vigna mungo HOM05D004884 ORTHO05D005873 2.2e-21 105.5 63 79.4
Glyma.07G031300 Glycine max HOM05D004884 ORTHO05D005873 2.9e-21 105.1 63 79.4
Gohir.A10G074700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 2.9e-21 105.1 63 77.8
Gohir.D10G076700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 2.9e-21 105.1 63 77.8
Potri.001G193100 Populus trichocarpa HOM05D004884 ORTHO05D005873 3.8e-21 104.8 63 79.4
RcHm_v2.0_Chr2g0135941 Rosa chinensis HOM05D004884 ORTHO05D005873 3.8e-21 104.8 63 79.4
arahy.Tifrunner.gnm1.ann1.Q10AU9 Arachis hypogaea HOM05D004884 ORTHO05D005873 5.0e-21 104.4 63 77.8
arahy.Tifrunner.gnm1.ann1.W4DERE Arachis hypogaea HOM05D004884 ORTHO05D005873 5.0e-21 104.4 63 77.8
Cc04_g04240 Coffea canephora HOM05D004884 ORTHO05D005873 5.0e-21 104.4 63 77.8
MD17G1208900 Malus domestica HOM05D004884 ORTHO05D005873 5.0e-21 104.4 63 77.8
Phvul.010G154800 Phaseolus vulgaris HOM05D004884 ORTHO05D005873 5.0e-21 104.4 63 77.8
Prupe.3G084300 Prunus persica HOM05D004884 ORTHO05D005873 5.0e-21 104.4 63 77.8
Ciclev10026708m.g Citrus clementina HOM05D004884 ORTHO05D005873 6.5e-21 104.0 63 77.8
Eucgr.F02527 Eucalyptus grandis HOM05D004884 ORTHO05D005873 6.5e-21 104.0 85 61.2
Glyma.15G008700 Glycine max HOM05D004884 ORTHO05D005873 6.5e-21 104.0 63 77.8
Gorai.011G082800 Gossypium raimondii HOM05D004884 ORTHO05D005873 6.5e-21 104.0 63 76.2
QL05p029075 Quercus lobata HOM05D004884 ORTHO05D005873 6.5e-21 104.0 63 76.2
Sabra06G0198100 Salix brachista HOM05D004884 ORTHO05D005873 6.5e-21 104.0 79 64.6
Atru.chr1.2995 Acer truncatum HOM05D004884 ORTHO05D005873 8.5e-21 103.6 63 77.8
Solyc11g008330.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 8.5e-21 103.6 63 74.6
Lj3g0000080 Lotus japonicus HOM05D004884 ORTHO05D005873 1.5e-20 102.8 63 76.2
Lalb_Chr04g0262431 Lupinus albus HOM05D004884 ORTHO05D005873 1.5e-20 102.8 63 76.2
Peaxi162Scf00145g01210 Petunia axillaris HOM05D004884 ORTHO05D005873 1.5e-20 102.8 63 71.4
PGR031G3479 Punica granatum HOM05D004884 ORTHO05D005873 1.5e-20 102.8 63 76.2
Sabra01G0135700 Salix brachista HOM05D004884 ORTHO05D005873 1.5e-20 102.8 63 77.8
GSVIVG01017313001 Vitis vinifera HOM05D004884 ORTHO05D005873 1.5e-20 102.8 63 77.8
PGSC0003DMG400000635 Solanum tuberosum HOM05D004884 ORTHO05D005873 1.9e-20 102.4 63 77.8
CAN.G407.94 Capsicum annuum HOM05D004884 ORTHO05D005873 2.5e-20 102.1 63 76.2
Lsat_1_v5_gn_1_2440 Lactuca sativa HOM05D004884 ORTHO05D005873 2.5e-20 102.1 63 76.2
Manes.04G114100 Manihot esculenta HOM05D004884 ORTHO05D005873 2.5e-20 102.1 63 76.2
Sopen11g004140 Solanum pennellii HOM05D004884 ORTHO05D005873 2.5e-20 102.1 58 77.6
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 3.2e-20 101.7 63 74.6
Lalb_Chr22g0350881 Lupinus albus HOM05D004884 ORTHO05D005873 3.2e-20 101.7 63 76.2
SalBow3G1656 Salvia bowleyana HOM05D004884 ORTHO05D005873 3.2e-20 101.7 63 74.6
SalBow6G6988 Salvia bowleyana HOM05D004884 ORTHO05D005873 3.2e-20 101.7 63 74.6
unitig_747.g21296 Utricularia gibba HOM05D004884 ORTHO05D005873 3.2e-20 101.7 63 74.6
ECA240G3509 Erigeron canadensis HOM05D004884 ORTHO05D005873 4.2e-20 101.3 63 76.2
HanXRQChr02g0046821 Helianthus annuus HOM05D004884 ORTHO05D005873 4.2e-20 101.3 63 76.2
Nitab4.5_0001764g0110 Nicotiana tabacum HOM05D004884 ORTHO05D005873 4.2e-20 101.3 63 77.8
Nitab4.5_0013106g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 4.2e-20 101.3 63 77.8
Oeu052257.1 Olea europaea HOM05D004884 ORTHO05D005873 4.2e-20 101.3 63 74.6
TWI75G0638 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 4.2e-20 101.3 61 75.4
MSTRG.9432 Avicennia marina HOM05D004884 ORTHO05D005873 5.5e-20 100.9 63 73.0
ECA247G2927 Erigeron canadensis HOM05D001354 ORTHO05D002582 5.5e-20 100.9 63 76.2
Hma1.2p1_0515F.1_g170110 Hydrangea macrophylla HOM05D004884 ORTHO05D005873 5.5e-20 100.9 63 74.6
Nitab4.5_0006187g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 5.5e-20 100.9 63 71.4
Oeu045160.1 Olea europaea HOM05D004884 ORTHO05D005873 5.5e-20 100.9 63 74.6
THA.LOC104808231 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 5.5e-20 100.9 63 74.6
vmacro20098 Vaccinium macrocarpon HOM05D004884 ORTHO05D005873 5.5e-20 100.9 63 74.6
Dinv30589 Davidia involucrata HOM05D004884 ORTHO05D005873 7.2e-20 100.5 63 73.0
FvH4_6g29940 Fragaria vesca HOM05D004884 ORTHO05D005873 7.2e-20 100.5 63 76.2
FAN05G0038 Fragaria x ananassa HOM05D004884 ORTHO05D005873 7.2e-20 100.5 63 76.2
FAN09G2574 Fragaria x ananassa HOM05D004884 ORTHO05D005873 7.2e-20 100.5 63 76.2
FAN14G1538 Fragaria x ananassa HOM05D004884 ORTHO05D005873 7.2e-20 100.5 63 76.2
Peaxi162Scf00207g00728 Petunia axillaris HOM05D004884 ORTHO05D005873 7.2e-20 100.5 63 74.6
Solyc03g116600.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 7.2e-20 100.5 63 74.6
Sopen03g035510 Solanum pennellii HOM05D004884 ORTHO05D005873 7.2e-20 100.5 63 74.6
THA.LOC104812503 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 7.2e-20 100.5 63 73.0
Migut.D01065 Erythranthe guttata HOM05D004884 ORTHO05D005873 9.4e-20 100.1 63 73.0
Psat5g301920 Pisum sativum HOM05D004884 ORTHO05D005873 9.4e-20 100.1 63 73.0
Potri.006G253700 Populus trichocarpa HOM05D004884 ORTHO05D005873 1.2e-19 99.8 94 55.3
SGA_v2.0_scaffold117G32369 Striga asiatica HOM05D004884 ORTHO05D005873 1.2e-19 99.8 63 73.0
Aa31LG4G430 Aethionema arabicum HOM05D004884 ORTHO05D005873 2.1e-19 99.0 63 71.4
AUR62031521 Chenopodium quinoa HOM05D004884 ORTHO05D005873 2.1e-19 99.0 60 73.3
Dinv38109 Davidia involucrata HOM05D000250 ORTHO05D002477 2.1e-19 99.0 63 73.0
Solyc06g068080.4 Solanum lycopersicum HOM05D004884 ORTHO05D005873 2.1e-19 99.0 63 73.0
Sopen06g025360 Solanum pennellii HOM05D004884 ORTHO05D005873 2.1e-19 99.0 63 73.0
PGSC0003DMG400028511 Solanum tuberosum HOM05D004884 ORTHO05D005873 2.1e-19 99.0 63 73.0
Actinidia18100 Actinidia chinensis HOM05D004884 ORTHO05D005873 2.7e-19 98.6 63 73.0
EL10Ac2g04219 Beta vulgaris HOM05D004884 ORTHO05D005873 2.7e-19 98.6 95 53.7
TWI34G0752 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 2.7e-19 98.6 63 71.4
CARHR015900 Cardamine hirsuta HOM05D004884 ORTHO05D005873 3.6e-19 98.2 63 69.8
Medtr2g103690 Medicago truncatula HOM05D004884 ORTHO05D005873 3.6e-19 98.2 63 73.0
FAN02G1988 Fragaria x ananassa HOM05D004884 ORTHO05D005873 4.7e-19 97.8 63 74.6
Rhsim10G0061400 Rhododendron simsii HOM05D004884 ORTHO05D005873 4.7e-19 97.8 63 71.4
CSS0003587 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 6.1e-19 97.4 63 73.0
CSS0011163 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 8.0e-19 97.1 61 72.1
Actinidia36285 Actinidia chinensis HOM05D004884 ORTHO05D005873 1.0e-18 96.7 63 71.4
Sp1g13700 Schrenkiella parvula HOM05D004884 ORTHO05D005873 1.4e-18 96.3 63 68.3
BcaB03g14545 Brassica carinata HOM05D004884 ORTHO05D005873 1.8e-18 95.9 63 68.3
BcaC05g25475 Brassica carinata HOM05D004884 ORTHO05D005873 1.8e-18 95.9 63 68.3
BcaC05g25490 Brassica carinata HOM05D004884 ORTHO05D005873 1.8e-18 95.9 63 68.3
A06p11400 Brassica napus HOM05D004884 ORTHO05D005873 1.8e-18 95.9 63 68.3
A09p61460 Brassica napus HOM05D004884 ORTHO05D005873 1.8e-18 95.9 63 68.3
C05p13510 Brassica napus HOM05D004884 ORTHO05D005873 1.8e-18 95.9 63 68.3
C08p45030 Brassica napus HOM05D004884 ORTHO05D005873 1.8e-18 95.9 63 68.3
BolC5t30088H Brassica oleracea HOM05D004884 ORTHO05D005873 1.8e-18 95.9 63 68.3
BraA06t24317Z Brassica rapa HOM05D004884 ORTHO05D005873 1.8e-18 95.9 63 68.3
BraA09t41517Z Brassica rapa HOM05D004884 ORTHO05D005873 1.8e-18 95.9 63 68.3
Thhalv10009024m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 1.8e-18 95.9 63 68.3
Thhalv10019295m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 1.8e-18 95.9 63 69.8
AL1G27470 Arabidopsis lyrata HOM05D004884 ORTHO05D005873 2.3e-18 95.5 63 66.7
AT1G15370 Arabidopsis thaliana HOM05D004884 ORTHO05D005873 2.3e-18 95.5 63 66.7
Carub.0001s1514 Capsella rubella HOM05D004884 ORTHO05D005873 2.3e-18 95.5 63 66.7
BcaC07g41506 Brassica carinata HOM05D004884 ORTHO05D005873 3.0e-18 95.1 63 68.3
BolC8t52049H Brassica oleracea HOM05D004884 ORTHO05D005873 3.0e-18 95.1 63 68.3
Gohir.D07G161600 Gossypium hirsutum HOM05D004884 ORTHO05D005873 3.0e-18 95.1 57 75.4
Gorai.001G184900 Gossypium raimondii HOM05D004884 ORTHO05D005873 3.0e-18 95.1 57 75.4
AUR62012868 Chenopodium quinoa HOM05D004884 ORTHO05D005873 5.2e-18 94.4 85 57.6
Zm00001eb064920 Zea mays HOM05D004884 ORTHO05D005873 5.2e-18 94.4 63 71.4
CAN.G321.60 Capsicum annuum HOM05D004884 ORTHO05D005873 1.5e-17 92.8 63 63.5
EL10Ac9g22900 Beta vulgaris HOM05D004884 ORTHO05D005873 3.4e-17 91.7 62 71.0
SMO143G0054 Selaginella moellendorffii HOM05D004884 ORTHO05D005873 4.4e-17 91.3 62 67.7
Peaxi162Scf00332g00767 Petunia axillaris HOM05D004884 ORTHO05D005873 5.7e-17 90.9 59 74.6
Pp3c18_11860 Physcomitrium patens HOM05D004884 ORTHO05D005873 2.8e-16 88.6 85 52.9
Haze_21525 Corylus avellana HOM05D004884 ORTHO05D005873 3.7e-16 88.2 103 50.5
Mapoly0005s0226 Marchantia polymorpha HOM05D004884 ORTHO05D005873 8.3e-16 87.0 62 61.3
BcaC07g41508 Brassica carinata HOM05D004884 ORTHO05D005873 1.2e-14 83.2 76 52.6
Gorai.013G087100 Gossypium raimondii HOM05D004884 ORTHO05D005873 1.6e-14 82.8 52 71.2
AagrBONN_evm.TU.Sc2ySwM_368.2705 Anthoceros agrestis HOM05D004884 ORTHO05D005873 2.7e-14 82.0 64 60.9
Nitab4.5_0005235g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.0e-13 80.1 86 51.2
Gohir.D13G076450 Gossypium hirsutum HOM05D004884 ORTHO05D005873 5.0e-13 77.8 47 72.3
Gohir.A13G076901 Gossypium hirsutum HOM05D004884 ORTHO05D005873 4.2e-12 74.7 63 57.1
QL05p029040 Quercus lobata HOM05D004884 ORTHO05D005873 4.2e-12 74.7 42 78.6
Gohir.D01G156500 Gossypium hirsutum HOM05D004884 ORTHO05D005873 2.6e-09 65.5 38 76.3
Nitab4.5_0001450g0150 Nicotiana tabacum HOM05D004884 ORTHO05D005873 2.6e-09 65.5 63 52.4
CBR_g8585 Chara braunii HOM05D004884 ORTHO05D005873 6.3e-08 60.8 62 48.4
Cre12.g561200 Chlamydomonas reinhardtii HOM05D004884 ORTHO05D005873 5.9e-06 54.3 61 41.0


User provided reference genes

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