Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A06G028401 Gossypium hirsutum HOM05D001656 ORTHO05D003489 3.9e-165 584.7 296 100.0
Gohir.A06G028500 Gossypium hirsutum HOM05D001656 ORTHO05D003489 1.3e-152 543.1 295 94.2
Gohir.D06G027300 Gossypium hirsutum HOM05D001656 ORTHO05D003489 2.2e-152 542.3 295 93.9
Gorai.010G030400 Gossypium raimondii HOM05D001656 ORTHO05D003489 4.2e-151 538.1 295 93.6
Gohir.D06G026800 Gossypium hirsutum HOM05D001656 ORTHO05D003489 1.4e-130 469.9 298 83.9
Gohir.D06G025900 Gossypium hirsutum HOM05D001656 ORTHO05D003489 1.0e-128 463.8 266 89.8
Duzib093G0139 Durio zibethinus HOM05D001656 ORTHO05D003489 2.3e-128 462.6 296 81.1
Thecc.08G080200 Theobroma cacao HOM05D001656 ORTHO05D003489 3.8e-128 461.8 296 79.7
Duzib116G0138 Durio zibethinus HOM05D001656 ORTHO05D003489 9.5e-127 457.2 297 80.1
Gohir.A05G214500 Gossypium hirsutum HOM05D001656 ORTHO05D003489 3.4e-108 395.6 297 68.7
Gohir.D05G217800 Gossypium hirsutum HOM05D001656 ORTHO05D003489 9.8e-108 394.0 297 68.4
Gohir.D01G112700 Gossypium hirsutum HOM05D001656 ORTHO05D003489 1.7e-107 393.3 295 69.8
Gorai.009G224600 Gossypium raimondii HOM05D001656 ORTHO05D003489 2.9e-107 392.5 297 68.0
Gorai.002G137500 Gossypium raimondii HOM05D001656 ORTHO05D003489 1.9e-106 389.8 295 69.2
Gohir.A01G125100 Gossypium hirsutum HOM05D001656 ORTHO05D003489 3.2e-106 389.0 295 69.2
Cfa020712 Carpinus fangiana HOM05D001656 ORTHO05D003489 3.9e-104 382.1 296 66.6
Prupe.1G542900 Prunus persica HOM05D001656 ORTHO05D003489 8.6e-104 380.9 296 66.9
TWI36G0018 Tripterygium wilfordii HOM05D001656 ORTHO05D003489 7.6e-100 367.9 296 65.2
Cpa.g.sc160.10 Carica papaya HOM05D001656 ORTHO05D003489 8.4e-99 364.4 296 64.5
QL12p040546 Quercus lobata HOM05D001656 ORTHO05D003489 2.7e-97 359.4 308 62.0
CiPaw.15G153400 Carya illinoinensis HOM05D001656 ORTHO05D003489 3.5e-97 359.0 296 64.2
COL.COLO4_35358 Corchorus olitorius HOM05D001656 ORTHO05D003489 3.5e-97 359.0 307 64.2
TWI56G0670 Tripterygium wilfordii HOM05D001656 ORTHO05D003489 1.7e-96 356.7 296 64.2
RcHm_v2.0_Chr7g0232361 Rosa chinensis HOM05D001656 ORTHO05D003489 2.5e-95 352.8 296 60.8
MD08G1211000 Malus domestica HOM05D001656 ORTHO05D003489 9.6e-95 350.9 296 61.5
Ciclev10000361m.g Citrus clementina HOM05D001656 ORTHO05D003489 1.4e-93 347.1 295 60.7
FvH4_5g33540 Fragaria vesca HOM05D001656 ORTHO05D003489 2.4e-93 346.3 296 60.8
Atru.chr13.918 Acer truncatum HOM05D001656 ORTHO05D003489 2.6e-92 342.8 296 60.1
MD15G1398300 Malus domestica HOM05D001656 ORTHO05D003489 7.6e-92 341.3 293 61.1
GSVIVG01029697001 Vitis vinifera HOM05D001656 ORTHO05D003489 4.9e-91 338.6 295 61.4
CANSAT25G1280 Cannabis sativa HOM05D001656 ORTHO05D003489 1.2e-89 334.0 296 59.5
Ca_03352_v3 Cicer arietinum L. HOM05D001656 ORTHO05D003489 6.0e-89 331.6 296 58.1
MELO3C026510.2 Cucumis melo HOM05D001656 ORTHO05D003489 6.6e-88 328.2 302 60.3
Manes.03G069648 Manihot esculenta HOM05D001656 ORTHO05D003489 2.5e-87 326.2 296 59.8
Potri.013G104400 Populus trichocarpa HOM05D001656 ORTHO05D003489 7.3e-87 324.7 300 59.3
Sed0023766 Sechium edule HOM05D001656 ORTHO05D003489 9.6e-87 324.3 299 58.2
FAN04G0452 Fragaria x ananassa HOM05D001656 ORTHO05D003489 2.8e-86 322.8 295 58.0
THA.LOC104820058 Tarenaya hassleriana HOM05D001656 ORTHO05D003489 4.8e-86 322.0 295 59.0
CsaV3_6G036010 Cucumis sativus L. HOM05D001656 ORTHO05D003489 8.1e-86 321.2 302 58.3
Glyma.04G088300 Glycine max HOM05D001656 ORTHO05D003489 8.1e-86 321.2 296 58.8
THA.LOC104816780 Tarenaya hassleriana HOM05D001656 ORTHO05D003489 5.3e-85 318.5 295 58.0
Actinidia23982 Actinidia chinensis HOM05D001656 ORTHO05D003489 6.9e-85 318.2 298 57.7
PGR031G1306 Punica granatum HOM05D001656 ORTHO05D003489 9.0e-85 317.8 294 57.5
AL1G20690 Arabidopsis lyrata HOM05D001656 ORTHO05D003489 1.2e-84 317.4 293 58.0
Glyma.17G191900 Glycine max HOM05D001656 ORTHO05D003489 1.5e-84 317.0 296 57.1
Actinidia11666 Actinidia chinensis HOM05D001656 ORTHO05D003489 2.0e-84 316.6 298 57.4
Potri.019G077700 Populus trichocarpa HOM05D001656 ORTHO05D003489 2.0e-84 316.6 297 58.2
Carub.0001s0941 Capsella rubella HOM05D001656 ORTHO05D003489 2.6e-84 316.2 293 57.7
Sp1g08640 Schrenkiella parvula HOM05D001656 ORTHO05D003489 3.4e-84 315.8 293 57.7
Manes.18G053500 Manihot esculenta HOM05D001656 ORTHO05D003489 4.5e-84 315.5 298 57.0
CSS0003613 Camellia sinensis var. sinensis HOM05D001656 ORTHO05D003489 1.3e-83 313.9 297 58.2
Medtr1g007420 Medicago truncatula HOM05D001656 ORTHO05D003489 1.3e-83 313.9 295 56.6
Sabra19G0088800 Salix brachista HOM05D001656 ORTHO05D003489 2.2e-83 313.2 300 57.7
BcaC07g41848 Brassica carinata HOM05D001656 ORTHO05D003489 6.4e-83 311.6 293 57.7
AT1G09980 Arabidopsis thaliana HOM05D001656 ORTHO05D003489 8.4e-83 311.2 293 57.7
A09p65220 Brassica napus HOM05D001656 ORTHO05D003489 1.1e-82 310.8 293 58.0
CARHR010100 Cardamine hirsuta HOM05D001656 ORTHO05D003489 1.1e-82 310.8 293 57.7
ClCG08G009120 Citrullus lanatus HOM05D001656 ORTHO05D003489 1.4e-82 310.5 345 52.5
Lalb_Chr23g0269821 Lupinus albus HOM05D001656 ORTHO05D003489 1.4e-82 310.5 296 56.1
TAR625G1477 Trochodendron aralioides HOM05D001656 ORTHO05D003489 1.4e-82 310.5 303 55.8
Sp2g05240 Schrenkiella parvula HOM05D001656 ORTHO05D003489 1.9e-82 310.1 293 55.3
C08p49170 Brassica napus HOM05D001656 ORTHO05D003489 3.2e-82 309.3 293 57.3
Glyma.06G090300 Glycine max HOM05D001656 ORTHO05D003489 3.2e-82 309.3 297 56.9
Phvul.001G063050 Phaseolus vulgaris HOM05D001656 ORTHO05D003489 5.4e-82 308.5 296 56.8
Thhalv10006833m.g Eutrema salsugineum HOM05D001656 ORTHO05D003489 7.1e-82 308.1 293 56.0
Carub.0002s0620 Capsella rubella HOM05D001656 ORTHO05D003489 1.2e-81 307.4 293 54.6
AL2G17870 Arabidopsis lyrata HOM05D001656 ORTHO05D003489 2.1e-81 306.6 293 54.9
BcaC04g22145 Brassica carinata HOM05D001656 ORTHO05D003489 2.1e-81 306.6 293 55.6
AT1G58350 Arabidopsis thaliana HOM05D001656 ORTHO05D003489 7.9e-81 304.7 293 54.9
A09p18330 Brassica napus HOM05D001656 ORTHO05D003489 1.0e-80 304.3 298 56.4
Eucgr.F02184 Eucalyptus grandis HOM05D001656 ORTHO05D003489 1.0e-80 304.3 294 55.4
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.0e-80 304.3 296 55.7
Lalb_Chr11g0064671 Lupinus albus HOM05D001656 ORTHO05D003489 1.3e-80 303.9 296 55.1
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.8e-80 303.5 296 55.4
C05p08150 Brassica napus HOM05D001656 ORTHO05D003489 2.3e-80 303.1 293 55.3
Aa31LG2G10790 Aethionema arabicum HOM05D001656 ORTHO05D003489 5.1e-80 302.0 297 55.6
BraA09t41867Z Brassica rapa HOM05D001656 ORTHO05D003489 2.5e-79 299.7 293 57.3
BcaC05g24823 Brassica carinata HOM05D001656 ORTHO05D003489 5.6e-79 298.5 293 55.6
Cpa.g.sc2.37 Carica papaya HOM05D001656 ORTHO05D003489 2.8e-78 296.2 294 51.7
Sabra13G0090300 Salix brachista HOM05D001656 ORTHO05D003489 2.8e-78 296.2 364 47.5
A06p06680 Brassica napus HOM05D001656 ORTHO05D003489 3.6e-78 295.8 294 54.1
BraA09t37464Z Brassica rapa HOM05D001656 ORTHO05D003489 3.6e-78 295.8 299 54.8
Medtr3g110690 Medicago truncatula HOM05D001656 ORTHO05D003489 8.1e-78 294.7 296 52.7
BolC8t52452H Brassica oleracea HOM05D001656 ORTHO05D003489 1.1e-77 294.3 293 56.0
Rhsim01G0193900 Rhododendron simsii HOM05D001656 ORTHO05D003489 3.1e-77 292.7 330 51.2
Atru.chr6.982 Acer truncatum HOM05D001656 ORTHO05D003489 2.0e-76 290.0 296 54.1
Cc04_g16130 Coffea canephora HOM05D001656 ORTHO05D003489 2.0e-76 290.0 300 51.3
Nn1g06077 Nelumbo nucifera HOM05D001656 ORTHO05D003489 4.5e-76 288.9 300 53.3
C09p22870 Brassica napus HOM05D001656 ORTHO05D003489 7.6e-76 288.1 294 54.1
BolC9t55207H Brassica oleracea HOM05D001656 ORTHO05D003489 7.6e-76 288.1 294 54.1
Lj1g0003271 Lotus japonicus HOM05D001656 ORTHO05D003489 7.6e-76 288.1 300 52.3
Sopen03g032680 Solanum pennellii HOM05D001656 ORTHO05D003489 7.6e-76 288.1 299 52.8
AUR62005970 Chenopodium quinoa HOM05D001656 ORTHO05D003489 1.3e-75 287.3 299 51.2
Solyc03g113640.4 Solanum lycopersicum HOM05D001656 ORTHO05D003489 1.7e-75 287.0 299 52.5
AUR62028100 Chenopodium quinoa HOM05D001656 ORTHO05D003489 2.9e-75 286.2 299 50.8
DCAR_005504 Daucus carota HOM05D001656 ORTHO05D003489 2.9e-75 286.2 295 52.2
BolC5t29567H Brassica oleracea HOM05D001656 ORTHO05D003489 3.8e-75 285.8 293 53.6
Migut.D01892 Erythranthe guttata HOM05D001656 ORTHO05D003489 3.8e-75 285.8 295 55.3
Ciclev10000310m.g Citrus clementina HOM05D001656 ORTHO05D003489 4.9e-75 285.4 300 54.0
MSTRG.4393 Avicennia marina HOM05D001656 ORTHO05D003489 8.4e-75 284.6 302 53.0
Aqoxy6G00378 Aquilegia oxysepala HOM05D001656 ORTHO05D003489 1.4e-74 283.9 301 51.5
EL10Ac3g05154 Beta vulgaris HOM05D001656 ORTHO05D003489 1.4e-74 283.9 299 51.8
Lju124C19T4 Lonicera japonica HOM05D001656 ORTHO05D003489 1.9e-74 283.5 300 54.0
CAN.G853.38 Capsicum annuum HOM05D001656 ORTHO05D003489 4.2e-74 282.3 302 51.7
Ah.07g204550 Amaranthus hybridus HOM05D001656 ORTHO05D003489 5.5e-74 282.0 300 50.7
Phvul.009G113900 Phaseolus vulgaris HOM05D001656 ORTHO05D003489 2.1e-73 280.0 299 52.2
Hund09724 Selenicereus undatus HOM05D001656 ORTHO05D003489 7.9e-73 278.1 298 51.0
BraA06t23882Z Brassica rapa HOM05D001656 ORTHO05D003489 1.0e-72 277.7 294 52.0
CSS0033770 Camellia sinensis var. sinensis HOM05D001656 ORTHO05D003489 3.9e-72 275.8 298 53.4
Sc13g0010550 Simmondsia chinensis HOM05D001656 ORTHO05D003489 8.7e-72 274.6 300 51.0
Aa31LG1G4900 Aethionema arabicum HOM05D001656 ORTHO05D003489 2.5e-71 273.1 294 53.7
MBI17_g13522_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D003489 4.3e-71 272.3 307 48.9
Migut.I00076 Erythranthe guttata HOM05D001656 ORTHO05D003489 5.6e-71 271.9 297 51.9
VMungo1309G1010 Vigna mungo HOM05D001656 ORTHO05D003489 1.1e-69 267.7 296 51.0
Dinv18177 Davidia involucrata HOM05D001656 ORTHO05D003489 1.8e-69 266.9 298 52.7
arahy.Tifrunner.gnm1.ann1.EW8P9I Arachis hypogaea HOM05D001656 ORTHO05D003489 4.0e-69 265.8 294 49.7
arahy.Tifrunner.gnm1.ann1.MCUW0T Arachis hypogaea HOM05D001656 ORTHO05D003489 1.5e-68 263.8 294 49.0
Ca_15557_v3 Cicer arietinum L. HOM05D001656 ORTHO05D003489 1.5e-68 263.8 283 50.5
Peaxi162Scf00017g02238 Petunia axillaris HOM05D001656 ORTHO05D003489 7.6e-68 261.5 295 50.2
TPR.G12371 Trifolium pratense HOM05D001656 ORTHO05D003489 7.6e-68 261.5 349 43.0
HanXRQChr11g0344231 Helianthus annuus HOM05D001656 ORTHO05D003489 2.2e-67 260.0 295 48.8
PSO675G3868 Papaver somniferum HOM05D001656 ORTHO05D003489 6.5e-67 258.5 293 51.2
SalBow3G0204 Salvia bowleyana HOM05D001656 ORTHO05D003489 8.4e-67 258.1 309 49.8
Nitab4.5_0020568g0010 Nicotiana tabacum HOM05D001656 ORTHO05D003489 1.1e-66 257.7 298 49.0
PSO541G1368 Papaver somniferum HOM05D001656 ORTHO05D003489 1.9e-66 256.9 293 50.9
ECA248G3915 Erigeron canadensis HOM05D001656 ORTHO05D003489 9.3e-66 254.6 299 49.2
Nn5g28753 Nelumbo nucifera HOM05D001656 ORTHO05D003489 2.1e-65 253.4 296 48.0
Nitab4.5_0002875g0070 Nicotiana tabacum HOM05D001656 ORTHO05D003489 3.5e-65 252.7 302 48.7
Gohir.D06G026866 Gossypium hirsutum HOM05D001656 ORTHO05D003489 7.9e-65 251.5 147 86.4
PGSC0003DMG400024574 Solanum tuberosum HOM05D001656 ORTHO05D003489 7.9e-65 251.5 281 49.1
Manes.05G186300 Manihot esculenta HOM05D001656 ORTHO05D003489 6.7e-64 248.4 315 47.6
Lsat_1_v5_gn_1_69641 Lactuca sativa HOM05D001656 ORTHO05D003489 7.4e-63 245.0 295 47.5
Oeu041590.1 Olea europaea HOM05D001656 ORTHO05D003489 3.7e-62 242.7 297 49.8
Glyma.08G183400 Glycine max HOM05D001656 ORTHO05D003489 6.3e-62 241.9 298 46.3
Psat7g095680 Pisum sativum HOM05D001656 ORTHO05D003489 3.1e-61 239.6 297 45.1
Glyma.15G049300 Glycine max HOM05D001656 ORTHO05D003489 4.1e-61 239.2 298 46.3
SGA_v2.0_scaffold114G31863 Striga asiatica HOM05D001656 ORTHO05D003489 1.5e-60 237.3 332 44.9
Haze_19017 Corylus avellana HOM05D001656 ORTHO05D003489 1.7e-59 233.8 208 59.1
HPP92_009299 Vanilla planifolia HOM05D001656 ORTHO05D003489 2.2e-59 233.4 302 45.7
TPR.G23822 Trifolium pratense HOM05D001656 ORTHO05D003489 3.8e-59 232.6 300 44.3
Lj4g0026988 Lotus japonicus HOM05D001656 ORTHO05D003489 6.5e-59 231.9 305 45.2
Medtr4g094378 Medicago truncatula HOM05D001656 ORTHO05D003489 1.4e-58 230.7 298 43.3
Lj6g0015393 Lotus japonicus HOM05D001656 ORTHO05D003489 1.6e-57 227.3 300 43.3
Zm00001eb407660 Zea mays HOM05D001656 ORTHO05D003489 2.7e-57 226.5 308 44.5
TAR250G0002 Trochodendron aralioides HOM05D001656 ORTHO05D003489 3.6e-57 226.1 181 61.9
Ca_00099_v3 Cicer arietinum L. HOM05D001656 ORTHO05D003489 1.0e-56 224.6 297 43.8
Ca_18321_v3 Cicer arietinum L. HOM05D001656 ORTHO05D003489 3.0e-56 223.0 298 44.3
Lalb_Chr18g0060791 Lupinus albus HOM05D001656 ORTHO05D003489 1.5e-55 220.7 296 45.3
Glyma.08G077100 Glycine max HOM05D001656 ORTHO05D003489 4.8e-54 215.7 304 44.1
Phvul.002G204000 Phaseolus vulgaris HOM05D001656 ORTHO05D003489 4.8e-54 215.7 307 43.3
CDE06G2450 Ceratophyllum demersum HOM05D001656 ORTHO05D003489 6.3e-54 215.3 295 43.1
vmacro14266 Vaccinium macrocarpon HOM05D001656 ORTHO05D003489 8.2e-54 214.9 181 60.8
Phvul.006G210700 Phaseolus vulgaris HOM05D001656 ORTHO05D003489 2.0e-52 210.3 296 41.6
VMungo0251G2951 Vigna mungo HOM05D001656 ORTHO05D003489 2.0e-52 210.3 306 43.5
TPR.G24531 Trifolium pratense HOM05D001656 ORTHO05D003489 1.7e-51 207.2 197 56.3
VMungo0540G0892 Vigna mungo HOM05D001656 ORTHO05D003489 6.5e-51 205.3 306 40.2
Thhalv10023308m.g Eutrema salsugineum HOM05D001656 ORTHO05D003489 3.2e-50 203.0 212 51.9
Psat2g123240 Pisum sativum HOM05D001656 ORTHO05D003489 4.2e-50 202.6 200 51.5
arahy.Tifrunner.gnm1.ann1.AB9876 Arachis hypogaea HOM05D001656 ORTHO05D003489 7.9e-49 198.4 298 40.6
Gorai.010G030200 Gossypium raimondii HOM05D001656 ORTHO05D003489 7.9e-49 198.4 115 88.7
Zm00001eb139410 Zea mays HOM05D001656 ORTHO05D003489 7.9e-49 198.4 218 49.1
arahy.Tifrunner.gnm1.ann1.0H8WKK Arachis hypogaea HOM05D001656 ORTHO05D003489 1.0e-48 198.0 296 38.9
ATR0820G193 Amborella trichopoda HOM05D001656 ORTHO05D003489 2.2e-46 190.3 302 38.7
Zm00001eb202450 Zea mays HOM05D001656 ORTHO05D003489 1.1e-45 188.0 310 38.7
Hma1.2p1_0442F.1_g153890 Hydrangea macrophylla HOM05D001656 ORTHO05D003489 1.4e-45 187.6 157 63.7
Lalb_Chr07g0189321 Lupinus albus HOM05D001656 ORTHO05D003489 3.1e-45 186.4 320 39.4
arahy.Tifrunner.gnm1.ann1.G0H17A Arachis hypogaea HOM05D001656 ORTHO05D003489 2.2e-43 180.3 296 40.9
unitig_744.g24393 Utricularia gibba HOM05D001656 ORTHO05D003489 7.2e-42 175.3 282 37.9
SalBow5G0425 Salvia bowleyana HOM05D001656 ORTHO05D003489 3.3e-39 166.4 197 48.2
SEGI_30798 Sequoiadendron giganteum HOM05D001656 ORTHO05D003489 2.9e-35 153.3 321 33.0
arahy.Tifrunner.gnm1.ann1.Z08EY9 Arachis hypogaea HOM05D001656 ORTHO05D003489 3.0e-32 143.3 196 44.9
MBI17_g44339_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D003489 3.6e-25 119.8 117 52.1
Lju124C19G14 Lonicera japonica HOM05D001656 ORTHO05D003489 7.7e-20 102.1 106 54.7
TPR.G35403 Trifolium pratense HOM05D001656 ORTHO05D003489 1.3e-19 101.3 105 52.4
Psat0s221g0120 Pisum sativum HOM05D001656 ORTHO05D003489 2.5e-18 97.1 92 57.6
TPR.G36549 Trifolium pratense HOM05D001656 ORTHO05D003489 1.0e-16 91.7 110 47.3
SMO353G0380 Selaginella moellendorffii HOM05D001656 ORTHO05D003489 2.3e-16 90.5 197 30.5
vmacro14265 Vaccinium macrocarpon HOM05D001656 ORTHO05D003489 6.8e-16 89.0 118 42.4
Haze_19018 Corylus avellana HOM05D001656 ORTHO05D003489 2.2e-14 84.0 69 69.6
AagrBONN_evm.TU.Sc2ySwM_362.276 Anthoceros agrestis HOM05D001656 ORTHO05D003489 9.2e-13 78.6 225 28.0
Lju124A19T69 Lonicera japonica HOM05D001656 ORTHO05D048437 1.3e-11 74.7 119 41.2
CBR_g50208 Chara braunii HOM05D001656 ORTHO05D003489 7.3e-10 68.9 127 37.0
ECA238G2565 Erigeron canadensis HOM05D001656 ORTHO05D003489 6.1e-09 65.9 118 35.6
SHI20936 Sapria himalayana HOM05D000105 ORTHO05D000023 8.9e-08 62.0 122 36.1


User provided reference genes

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