Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A05G415501 Gossypium hirsutum HOM05D007287 ORTHO05D008965 4.2e-104 381.3 189 100.0
Gohir.A05G415801 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.6e-87 326.2 199 86.4
Gorai.005G001000 Gossypium raimondii HOM05D007287 ORTHO05D008965 1.0e-86 323.6 242 73.6
Gohir.D02G000600 Gossypium hirsutum HOM05D007287 ORTHO05D008965 5.2e-86 321.2 242 72.7
Gohir.A02G000300 Gossypium hirsutum HOM05D007287 ORTHO05D008965 2.0e-85 319.3 242 72.7
Thecc.04G001200 Theobroma cacao HOM05D007287 ORTHO05D008965 3.4e-61 238.8 242 56.6
Duzib268G0768 Durio zibethinus HOM05D007287 ORTHO05D008965 1.1e-51 207.2 242 51.2
Gohir.A12G000800 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.2e-47 193.7 142 73.2
Manes.08G167300 Manihot esculenta HOM05D007287 ORTHO05D008965 1.2e-29 134.0 234 38.5
Manes.09G120600 Manihot esculenta HOM05D007287 ORTHO05D008965 5.8e-29 131.7 203 43.3
Potri.016G142100 Populus trichocarpa HOM05D007287 ORTHO05D008965 3.5e-26 122.5 218 39.0
Dinv16928 Davidia involucrata HOM05D007287 ORTHO05D008965 6.7e-25 118.2 228 37.7
Potri.006G112600 Populus trichocarpa HOM05D007287 ORTHO05D008965 8.7e-25 117.9 215 38.6
Cfa016991 Carpinus fangiana HOM05D007287 ORTHO05D008965 1.5e-24 117.1 193 39.4
Sabra04G0158300 Salix brachista HOM05D007287 ORTHO05D008965 3.3e-24 115.9 218 38.1
Ciclev10012636m.g Citrus clementina HOM05D007287 ORTHO05D008965 5.6e-24 115.2 235 35.7
QL07p030582 Quercus lobata HOM05D007287 ORTHO05D008965 5.6e-24 115.2 176 43.2
QL07p031465 Quercus lobata HOM05D007287 ORTHO05D008965 5.6e-24 115.2 176 43.2
Haze_21214 Corylus avellana HOM05D007287 ORTHO05D008965 9.6e-24 114.4 193 38.9
Rhsim04G0120200 Rhododendron simsii HOM05D007287 ORTHO05D008965 9.6e-24 114.4 230 36.1
TWI74G0480 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 3.7e-23 112.5 192 40.1
Glyma.03G000900 Glycine max HOM05D007287 ORTHO05D008965 4.8e-23 112.1 112 55.4
Cpa.g.sc60.59 Carica papaya HOM05D007287 ORTHO05D008965 6.2e-23 111.7 227 37.0
vmacro08958 Vaccinium macrocarpon HOM05D007287 ORTHO05D008965 6.2e-23 111.7 223 35.4
Sabra06G0087700 Salix brachista HOM05D007287 ORTHO05D008965 1.8e-22 110.2 197 38.6
TWI77G0104 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 2.4e-22 109.8 213 39.0
Prupe.6G299000 Prunus persica HOM05D007287 ORTHO05D008965 4.0e-22 109.0 202 40.6
Glyma.16G221800 Glycine max HOM05D007287 ORTHO05D008965 2.6e-21 106.3 112 52.7
Atru.chr8.50 Acer truncatum HOM05D007287 ORTHO05D008965 9.9e-21 104.4 243 35.4
MD04G1179200 Malus domestica HOM05D007287 ORTHO05D008965 6.4e-20 101.7 200 36.0
Oeu039292.1 Olea europaea HOM05D007287 ORTHO05D008965 6.4e-20 101.7 209 35.9
FAN09G3442 Fragaria x ananassa HOM05D007287 ORTHO05D008965 7.1e-19 98.2 188 36.2
PGR031G1010 Punica granatum HOM05D007287 ORTHO05D008965 7.1e-19 98.2 116 46.6
CSS0006882 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 1.6e-18 97.1 215 34.9
CSS0027605 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 4.6e-18 95.5 218 35.3
Phvul.010G060000 Phaseolus vulgaris HOM05D007287 ORTHO05D008965 7.9e-18 94.7 160 41.2
FvH4_6g09290 Fragaria vesca HOM05D007287 ORTHO05D008965 1.0e-17 94.4 231 32.9
Actinidia20808 Actinidia chinensis HOM05D007287 ORTHO05D008965 2.3e-17 93.2 194 32.5
RcHm_v2.0_Chr3g0459671 Rosa chinensis HOM05D007287 ORTHO05D008965 2.3e-17 93.2 235 32.3
Lsat_1_v5_gn_5_153761 Lactuca sativa HOM05D007287 ORTHO05D008965 1.1e-16 90.9 220 30.5
GSVIVG01029850001 Vitis vinifera HOM05D007287 ORTHO05D008965 1.5e-16 90.5 188 35.6
VMungo0331G1821 Vigna mungo HOM05D007287 ORTHO05D008965 5.6e-16 88.6 112 46.4
ECA248G0550 Erigeron canadensis HOM05D007287 ORTHO05D008965 1.6e-15 87.0 222 35.1
ClCG04G006100 Citrullus lanatus HOM05D007287 ORTHO05D008965 2.8e-15 86.3 200 32.5
AUR62029815 Chenopodium quinoa HOM05D007287 ORTHO05D008965 1.4e-14 84.0 115 42.6
Nn5g26760 Nelumbo nucifera HOM05D007287 ORTHO05D008965 1.8e-14 83.6 194 37.1
CsaV3_4G027460 Cucumis sativus L. HOM05D007287 ORTHO05D008965 3.1e-14 82.8 105 45.7
Sed0017124 Sechium edule HOM05D007287 ORTHO05D008965 1.2e-13 80.9 106 43.4
TAR633G2304 Trochodendron aralioides HOM05D007287 ORTHO05D008965 1.5e-13 80.5 214 31.3
MBI15_g22001_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 2.0e-13 80.1 119 38.7
Nitab4.5_0002785g0030 Nicotiana tabacum HOM05D007287 ORTHO05D008965 2.0e-13 80.1 117 41.9
AUR62006459 Chenopodium quinoa HOM05D007287 ORTHO05D008965 3.4e-13 79.3 115 41.7
Lj3g0024711 Lotus japonicus HOM05D007287 ORTHO05D008965 3.4e-13 79.3 138 43.5
Ah.02g119260 Amaranthus hybridus HOM05D007287 ORTHO05D008965 4.5e-13 79.0 105 43.8
HanXRQChr11g0345021 Helianthus annuus HOM05D007287 ORTHO05D008965 5.8e-13 78.6 214 33.2
Nitab4.5_0000356g0060 Nicotiana tabacum HOM05D007287 ORTHO05D008965 5.8e-13 78.6 117 41.0
PGSC0003DMG400020867 Solanum tuberosum HOM05D007287 ORTHO05D008965 5.8e-13 78.6 117 40.2
Peaxi162Scf00732g00008 Petunia axillaris HOM05D007287 ORTHO05D008965 7.6e-13 78.2 117 40.2
CANSAT01G2619 Cannabis sativa HOM05D007287 ORTHO05D008965 1.7e-12 77.0 208 30.3
Eucgr.A00853 Eucalyptus grandis HOM05D007287 ORTHO05D008965 2.2e-12 76.6 120 37.5
Eucgr.K01309 Eucalyptus grandis HOM05D007287 ORTHO05D008965 3.8e-12 75.9 117 40.2
MBI15_g05588_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 1.9e-11 73.6 119 37.8
Ca_18906_v3 Cicer arietinum L. HOM05D007287 ORTHO05D008965 9.3e-11 71.2 107 42.1
MSTRG.26833 Avicennia marina HOM05D007287 ORTHO05D008965 1.6e-10 70.5 213 27.7
EL10Ac6g15481 Beta vulgaris HOM05D007287 ORTHO05D008965 2.7e-10 69.7 210 31.4
THA.LOC104806658 Tarenaya hassleriana HOM05D009615 ORTHO05D011760 3.5e-10 69.3 107 39.3
CAN.G616.24 Capsicum annuum HOM05D007287 ORTHO05D008965 6.1e-10 68.6 117 36.8
Medtr8g005070 Medicago truncatula HOM05D007287 ORTHO05D008965 7.9e-10 68.2 123 39.0
MELO3C025269.2 Cucumis melo HOM05D007287 ORTHO05D008965 1.0e-09 67.8 97 43.3
TWI53G0571 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 1.0e-09 67.8 182 34.1
Cc06_g00120 Coffea canephora HOM05D007287 ORTHO05D008965 3.0e-09 66.2 125 37.6
Sopen09g026010 Solanum pennellii HOM05D007287 ORTHO05D008965 3.0e-09 66.2 193 33.2
Aqoxy2G01629 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 1.5e-08 63.9 218 26.1
Lalb_Chr13g0290321 Lupinus albus HOM05D007287 ORTHO05D008965 1.5e-08 63.9 139 33.8
CDE07G0622 Ceratophyllum demersum HOM05D007287 ORTHO05D008965 1.9e-08 63.5 195 29.7
Solyc09g031900.4 Solanum lycopersicum HOM05D007287 ORTHO05D008965 1.9e-08 63.5 192 32.8
arahy.Tifrunner.gnm1.ann1.K8RLSB Arachis hypogaea HOM05D007287 ORTHO05D008965 2.5e-08 63.2 177 32.8
DCAR_014750 Daucus carota HOM05D007287 ORTHO05D008965 2.5e-08 63.2 120 35.8
FAN02G3892 Fragaria x ananassa HOM05D001484 ORTHO05D008965 3.3e-08 62.8 182 29.1
Thhalv10017369m.g Eutrema salsugineum HOM05D009615 ORTHO05D011760 4.3e-08 62.4 80 47.5
AL4G21750 Arabidopsis lyrata HOM05D009615 ORTHO05D011760 5.7e-08 62.0 119 38.7
arahy.Tifrunner.gnm1.ann1.HN5ZMV Arachis hypogaea HOM05D007287 ORTHO05D008965 5.7e-08 62.0 176 32.4
TPR.G30730 Trifolium pratense HOM05D007287 ORTHO05D008965 7.4e-08 61.6 144 32.6
PSO339G4161 Papaver somniferum HOM05D007287 ORTHO05D008965 1.3e-07 60.8 78 43.6
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 2.2e-07 60.1 122 34.4
PSO384G1025 Papaver somniferum HOM05D007287 ORTHO05D008965 3.7e-07 59.3 77 41.6
AT2G28330 Arabidopsis thaliana HOM05D009615 ORTHO05D011760 6.3e-07 58.5 129 34.1
Thhalv10009338m.g Eutrema salsugineum HOM05D009615 ORTHO05D011760 6.3e-07 58.5 78 44.9
Sp4g11120 Schrenkiella parvula HOM05D009615 ORTHO05D011760 6.3e-07 58.5 152 33.6
Sc20g0007340 Simmondsia chinensis HOM05D007287 ORTHO05D008965 1.1e-06 57.8 197 28.4
Sc20g0007530 Simmondsia chinensis HOM05D007287 ORTHO05D008965 1.1e-06 57.8 197 28.4
Psat2g191120 Pisum sativum HOM05D007287 ORTHO05D008965 2.4e-06 56.6 176 29.0
Carub.0001s0738 Capsella rubella HOM05D009615 ORTHO05D011760 3.1e-06 56.2 78 44.9
C08p03480 Brassica napus HOM05D009615 ORTHO05D011760 4.1e-06 55.8 103 36.9
BolC8t47150H Brassica oleracea HOM05D009615 ORTHO05D011760 4.1e-06 55.8 103 36.9
Carub.0004s0923 Capsella rubella HOM05D009615 ORTHO05D011760 4.1e-06 55.8 83 41.0
A08p35360 Brassica napus HOM05D009615 ORTHO05D011760 6.9e-06 55.1 78 42.3
BraA08t35442Z Brassica rapa HOM05D009615 ORTHO05D011760 6.9e-06 55.1 78 42.3
AL1G18370 Arabidopsis lyrata HOM05D009615 ORTHO05D011760 9.0e-06 54.7 117 32.5


User provided reference genes

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