Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 4.9e-195 684.5 395 100.0
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 5.2e-189 664.5 395 97.2
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 7.0e-186 654.1 395 95.4
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 3.6e-166 588.6 395 86.6
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 1.1e-159 567.0 395 86.3
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 9.3e-138 494.2 404 68.8
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 8.5e-131 471.1 398 76.1
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 1.9e-130 469.9 398 73.1
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 4.2e-130 468.8 412 68.4
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 2.1e-129 466.5 406 72.7
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 3.7e-126 455.7 404 70.3
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 4.8e-126 455.3 402 66.7
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 6.3e-126 454.9 413 66.8
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 2.0e-124 449.9 395 62.5
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 2.0e-124 449.9 405 65.4
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.6e-124 449.5 405 68.9
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 3.4e-124 449.1 406 68.7
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 3.6e-121 439.1 404 66.8
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 5.7e-119 431.8 415 63.4
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 1.0e-115 421.0 398 62.8
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 8.0e-113 411.4 401 63.1
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 1.8e-112 410.2 409 59.4
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.3e-112 409.8 393 59.0
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 3.9e-112 409.1 389 63.0
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 8.8e-112 407.9 405 62.5
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 2.6e-111 406.4 409 62.1
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 1.8e-109 400.2 430 60.9
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 1.7e-107 393.7 415 64.8
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 1.7e-107 393.7 407 58.0
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 1.5e-106 390.6 419 60.6
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 5.5e-106 388.7 402 58.5
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 9.4e-106 387.9 398 57.5
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 1.6e-105 387.1 400 63.0
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 1.0e-104 384.4 416 59.6
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 4.0e-104 382.5 403 55.6
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 4.0e-104 382.5 400 63.8
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 6.7e-104 381.7 400 61.8
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 8.8e-104 381.3 412 61.2
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 2.6e-103 379.8 395 62.3
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 3.3e-103 379.4 411 57.9
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 3.1e-101 372.9 434 51.8
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 4.1e-101 372.5 395 60.8
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 4.1e-101 372.5 396 55.8
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 9.1e-101 371.3 396 59.1
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 1.2e-100 370.9 395 59.7
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 1.0e-99 367.9 399 53.1
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 1.3e-99 367.5 414 58.0
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 4.2e-98 362.5 396 58.1
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 4.2e-98 362.5 402 54.7
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 2.6e-95 353.2 398 54.3
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 7.0e-93 345.1 405 56.3
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 4.5e-92 342.4 402 58.5
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 1.3e-91 340.9 404 55.7
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 2.5e-90 336.7 409 51.1
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 1.2e-89 334.3 403 50.6
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 4.4e-87 325.9 395 57.5
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 5.7e-87 325.5 404 58.4
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 1.3e-83 314.3 395 60.0
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 1.1e-82 311.2 403 57.1
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 5.8e-79 298.9 398 53.5
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 9.8e-79 298.1 404 50.7
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 2.5e-74 283.5 397 54.9
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 2.5e-74 283.5 397 54.9
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 1.2e-73 281.2 416 48.3
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 1.5e-66 257.7 399 50.9
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 2.5e-66 256.9 328 57.9
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.6e-65 254.2 324 53.7
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.2e-60 238.0 236 58.1
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 3.9e-59 233.0 397 41.8
Lj2P435T33 Lonicera japonica HOM05D004237 ORTHO05D005002 5.1e-59 232.6 286 59.8
Glyma.14G069000 Glycine max HOM05D004237 ORTHO05D005002 1.0e-51 208.4 324 53.4
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 3.0e-51 206.8 477 39.4
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 9.6e-50 201.8 289 45.0
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.1e-48 198.4 335 42.1
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 4.4e-47 193.0 453 37.3
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 3.3e-42 176.8 123 65.9
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 9.6e-42 175.3 277 41.5
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 2.8e-41 173.7 279 40.9
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 1.4e-40 171.4 443 41.1
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 2.4e-40 170.6 273 40.7
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 2.4e-40 170.6 447 36.2
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 9.0e-40 168.7 268 41.4
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 9.0e-40 168.7 137 55.5
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 9.0e-40 168.7 283 39.9
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 1.2e-39 168.3 261 42.1
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 1.2e-39 168.3 271 39.5
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 5.8e-39 166.0 249 43.8
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 1.3e-38 164.9 468 34.8
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 1.3e-38 164.9 468 34.8
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.7e-38 164.5 258 40.7
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 2.2e-38 164.1 138 55.8
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 2.9e-38 163.7 128 57.8
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 4.9e-38 162.9 255 42.0
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 4.9e-38 162.9 130 58.5
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 4.9e-38 162.9 264 40.2
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 6.4e-38 162.5 122 59.8
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 6.4e-38 162.5 441 36.3
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 8.4e-38 162.2 278 38.5
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 8.4e-38 162.2 434 36.4
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.1e-37 161.8 267 38.6
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 1.1e-37 161.8 255 40.8
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 1.9e-37 161.0 247 40.9
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.9e-37 161.0 268 39.2
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.9e-37 161.0 446 36.8
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 3.2e-37 160.2 122 58.2
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 3.2e-37 160.2 143 52.4
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 4.2e-37 159.8 267 38.2
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 5.4e-37 159.5 138 55.1
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 5.4e-37 159.5 268 38.8
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 5.4e-37 159.5 313 35.8
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 5.4e-37 159.5 150 53.3
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 5.4e-37 159.5 120 60.0
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 7.1e-37 159.1 120 60.0
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 7.1e-37 159.1 120 60.0
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 9.3e-37 158.7 297 39.1
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.2e-36 158.3 261 38.7
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 1.2e-36 158.3 423 35.0
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 1.6e-36 157.9 269 38.3
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 2.1e-36 157.5 287 35.9
RcHm_v2.0_Chr1g0333501 Rosa chinensis HOM05D004237 ORTHO05D005002 2.1e-36 157.5 175 58.3
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 2.7e-36 157.1 119 60.5
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 3.5e-36 156.8 256 41.0
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 3.5e-36 156.8 274 39.1
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 3.5e-36 156.8 134 52.2
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 3.5e-36 156.8 134 52.2
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 4.6e-36 156.4 270 40.0
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 4.6e-36 156.4 166 48.2
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 4.6e-36 156.4 406 36.7
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 6.0e-36 156.0 463 32.0
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 7.9e-36 155.6 458 34.9
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 7.9e-36 155.6 280 38.2
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.3e-35 154.1 258 39.5
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 3.0e-35 153.7 264 38.3
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 6.7e-35 152.5 278 38.8
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 1.1e-34 151.8 277 36.8
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 1.1e-34 151.8 435 35.4
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 1.1e-34 151.8 419 31.5
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 1.1e-34 151.8 190 44.2
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 1.5e-34 151.4 121 56.2
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 2.5e-34 150.6 287 36.2
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 2.5e-34 150.6 260 39.6
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.6e-33 147.9 387 34.1
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 1.6e-33 147.9 449 36.3
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 2.1e-33 147.5 459 29.8
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 2.1e-33 147.5 442 34.2
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 4.8e-33 146.4 393 32.6
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 2.4e-32 144.1 438 35.2
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 2.6e-31 140.6 405 35.1
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 4.5e-31 139.8 123 53.7
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 7.6e-31 139.0 440 36.4
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 9.9e-31 138.7 119 54.6
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 3.8e-30 136.7 85 75.3
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 8.4e-30 135.6 248 38.3
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.2e-28 131.7 255 37.6
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 2.1e-28 131.0 234 38.0
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 2.7e-28 130.6 253 37.5
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 1.3e-27 128.3 258 36.4
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 2.3e-27 127.5 457 33.7
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 6.3e-17 92.8 257 33.5
Peaxi162Scf00013g03225 Petunia axillaris HOM05D004237 ORTHO05D005002 1.3e-09 68.6 43 72.1
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 2.2e-09 67.8 216 31.9


User provided reference genes

Program Settings