Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.2e-65 253.1 129 100.0
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.0e-56 223.4 123 91.9
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.0e-56 223.4 123 91.9
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 5.0e-56 221.1 123 90.2
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 1.5e-52 209.5 123 84.6
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 7.4e-52 207.2 123 84.6
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 6.3e-51 204.1 123 83.7
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 4.1e-50 201.4 123 82.1
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.2e-49 199.9 123 80.5
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 3.5e-49 198.4 123 77.2
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 5.9e-49 197.6 123 76.4
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 5.9e-49 197.6 123 79.7
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 5.9e-49 197.6 123 79.7
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.0e-48 196.8 123 79.7
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 2.2e-48 195.7 123 76.4
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 2.2e-48 195.7 123 76.4
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 2.2e-48 195.7 123 78.0
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 3.8e-48 194.9 123 78.9
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 6.5e-48 194.1 123 77.2
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.9e-47 192.6 123 75.6
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 2.5e-47 192.2 123 76.4
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 3.2e-47 191.8 123 76.4
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 3.2e-47 191.8 123 76.4
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 3.2e-47 191.8 123 74.8
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 3.2e-47 191.8 123 76.4
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 4.2e-47 191.4 123 75.6
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 4.2e-47 191.4 123 75.6
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 4.2e-47 191.4 123 74.8
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 4.2e-47 191.4 123 75.6
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 5.5e-47 191.0 123 73.2
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 7.2e-47 190.7 123 75.6
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 1.2e-46 189.9 123 74.8
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 1.2e-46 189.9 123 74.8
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 1.6e-46 189.5 123 76.4
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 2.1e-46 189.1 123 71.5
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 2.7e-46 188.7 123 74.0
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 4.7e-46 188.0 121 76.0
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 6.1e-46 187.6 123 74.0
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 8.0e-46 187.2 123 75.6
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 8.0e-46 187.2 123 74.8
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 1.0e-45 186.8 123 74.0
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 1.0e-45 186.8 123 75.6
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 1.0e-45 186.8 121 76.0
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.4e-45 186.4 123 74.8
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.8e-45 186.0 123 74.0
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 1.8e-45 186.0 123 73.2
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 1.8e-45 186.0 120 73.3
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 2.3e-45 185.7 123 74.8
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 2.3e-45 185.7 123 74.8
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 3.0e-45 185.3 123 72.4
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 4.0e-45 184.9 123 72.4
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 4.0e-45 184.9 123 72.4
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 6.7e-45 184.1 123 74.0
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 8.8e-45 183.7 123 72.4
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 8.8e-45 183.7 123 71.5
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 8.8e-45 183.7 123 71.5
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 8.8e-45 183.7 123 74.8
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 1.2e-44 183.3 123 73.2
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 1.5e-44 183.0 123 74.8
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 1.5e-44 183.0 123 71.5
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 2.0e-44 182.6 123 73.2
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 2.0e-44 182.6 123 70.7
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 2.0e-44 182.6 121 76.0
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 2.6e-44 182.2 123 71.5
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 2.6e-44 182.2 123 74.0
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 2.6e-44 182.2 121 75.2
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 7.5e-44 180.6 123 74.0
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 7.5e-44 180.6 123 74.0
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 7.5e-44 180.6 123 74.0
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 9.7e-44 180.3 123 69.9
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 1.3e-43 179.9 123 69.9
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 1.7e-43 179.5 123 70.7
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 1.7e-43 179.5 123 71.5
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 1.7e-43 179.5 123 71.5
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 3.7e-43 178.3 120 74.2
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 3.7e-43 178.3 123 72.4
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 3.7e-43 178.3 123 70.7
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 4.8e-43 177.9 123 69.1
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 6.3e-43 177.6 123 72.4
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 8.2e-43 177.2 123 70.7
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 8.2e-43 177.2 123 70.7
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 1.1e-42 176.8 123 69.9
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 1.4e-42 176.4 123 70.7
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.4e-42 176.4 123 69.1
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 1.4e-42 176.4 123 69.9
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 2.4e-42 175.6 123 66.7
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 3.1e-42 175.3 123 69.1
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.1e-42 174.9 123 69.1
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 4.1e-42 174.9 123 69.9
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 4.1e-42 174.9 123 69.9
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 5.3e-42 174.5 123 69.1
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 5.3e-42 174.5 123 69.9
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 7.0e-42 174.1 123 72.4
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 9.1e-42 173.7 123 71.5
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 1.2e-41 173.3 114 71.1
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 1.6e-41 172.9 123 68.3
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.6e-41 172.9 123 69.1
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 2.7e-41 172.2 120 73.3
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 7.7e-41 170.6 123 69.9
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 1.0e-40 170.2 123 67.5
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 1.0e-40 170.2 123 66.7
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 1.7e-40 169.5 123 67.5
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 5.0e-40 167.9 123 66.7
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 5.0e-40 167.9 123 64.2
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 5.0e-40 167.9 123 64.2
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.5e-39 166.4 137 62.8
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 1.9e-39 166.0 123 63.4
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 2.5e-39 165.6 123 68.3
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 5.5e-39 164.5 124 65.3
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 9.4e-39 163.7 124 66.9
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 1.4e-37 159.8 121 64.5
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 1.8e-37 159.5 107 72.0
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 5.7e-36 154.5 123 62.6
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 7.5e-36 154.1 121 65.3
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 9.1e-34 147.1 124 61.3
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 1.6e-33 146.4 99 72.7
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 3.2e-31 138.7 104 64.4
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 3.2e-31 138.7 123 56.9
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 4.5e-25 118.2 123 53.7
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.3e-24 116.7 125 55.2
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 8.0e-22 107.5 125 51.2
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 8.0e-22 107.5 125 51.2
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 8.0e-22 107.5 69 73.9
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 2.7e-17 92.4 125 37.6
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 8.0e-14 80.9 85 54.1
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 5.2e-13 78.2 125 38.4
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 7.0e-10 67.8 112 36.6
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 9.2e-10 67.4 60 60.0
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 9.2e-10 67.4 65 60.0
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 3.5e-09 65.5 68 54.4
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 4.6e-09 65.1 64 57.8
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 4.3e-07 58.5 44 59.1


User provided reference genes

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