Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.6e-121 439.5 226 100.0
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 1.0e-117 426.8 226 97.3
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 2.6e-116 422.2 229 96.1
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.6e-97 359.8 226 82.3
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 1.6e-97 359.8 226 81.0
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 2.7e-97 359.0 224 81.2
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.0e-96 357.1 226 81.9
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 8.6e-96 354.0 226 80.5
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 1.2e-94 350.1 229 81.2
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 3.6e-94 348.6 226 79.2
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 7.1e-90 334.3 225 75.1
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 3.9e-88 328.6 226 74.3
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 4.3e-87 325.1 224 76.3
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 4.3e-87 325.1 226 73.5
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 4.3e-87 325.1 223 74.4
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 9.6e-87 323.9 226 75.2
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 2.8e-86 322.4 226 71.7
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 1.1e-85 320.5 226 72.6
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 1.8e-85 319.7 226 71.2
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 2.4e-85 319.3 224 75.0
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 2.4e-85 319.3 224 75.4
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 3.1e-85 318.9 225 73.8
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 3.1e-85 318.9 226 75.7
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 6.8e-85 317.8 226 71.2
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 8.9e-85 317.4 224 73.7
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 8.9e-85 317.4 222 70.7
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 1.2e-84 317.0 224 73.2
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 2.0e-84 316.2 226 73.0
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.6e-84 315.8 224 73.2
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 2.6e-84 315.8 226 70.8
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 2.6e-84 315.8 226 71.7
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 4.4e-84 315.1 226 70.4
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 4.4e-84 315.1 226 71.7
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 5.8e-84 314.7 227 70.5
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 9.9e-84 313.9 222 74.3
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 9.9e-84 313.9 224 73.2
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 1.3e-83 313.5 248 68.1
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 1.3e-83 313.5 226 72.1
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 1.7e-83 313.2 223 71.3
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 2.2e-83 312.8 223 71.3
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 3.8e-83 312.0 224 72.8
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 4.9e-83 311.6 226 72.1
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 4.9e-83 311.6 213 77.5
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 4.9e-83 311.6 226 71.7
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 6.4e-83 311.2 226 69.0
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 8.4e-83 310.8 224 71.4
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 8.4e-83 310.8 223 71.7
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 8.4e-83 310.8 226 71.2
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 8.4e-83 310.8 226 72.1
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 1.1e-82 310.5 226 71.2
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 1.4e-82 310.1 223 70.9
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 1.9e-82 309.7 224 71.0
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 1.9e-82 309.7 226 71.7
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 1.2e-81 307.0 225 70.2
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 1.2e-81 307.0 226 71.2
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 1.6e-81 306.6 226 71.2
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 2.1e-81 306.2 269 63.2
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 2.1e-81 306.2 226 69.0
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 2.7e-81 305.8 222 69.8
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 2.7e-81 305.8 226 72.1
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 4.6e-81 305.1 222 66.2
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 4.6e-81 305.1 223 71.3
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 6.0e-81 304.7 226 69.9
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 6.0e-81 304.7 226 70.8
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 2.3e-80 302.8 222 65.3
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 2.3e-80 302.8 222 65.3
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 2.3e-80 302.8 222 65.3
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 2.3e-80 302.8 226 69.9
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 3.9e-80 302.0 222 65.8
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 5.1e-80 301.6 228 68.4
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 5.1e-80 301.6 228 69.3
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 6.6e-80 301.2 221 72.4
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 1.1e-79 300.4 224 67.9
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 1.9e-79 299.7 235 65.5
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 2.5e-79 299.3 222 64.9
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 2.5e-79 299.3 222 64.9
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 2.5e-79 299.3 225 67.6
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 7.3e-79 297.7 224 69.6
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 7.3e-79 297.7 222 65.3
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 1.6e-78 296.6 222 63.5
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 1.6e-78 296.6 225 68.9
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 2.1e-78 296.2 224 67.4
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 3.6e-78 295.4 225 68.9
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 4.8e-78 295.0 224 67.0
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 8.1e-78 294.3 222 70.3
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 1.1e-77 293.9 222 64.9
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 1.4e-77 293.5 222 64.0
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 4.0e-77 292.0 234 65.4
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 1.2e-76 290.4 230 66.5
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 1.5e-76 290.0 221 67.4
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 4.4e-76 288.5 224 63.8
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 7.6e-76 287.7 216 72.2
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 1.7e-75 286.6 245 62.9
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 1.1e-74 283.9 225 64.9
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.1e-74 283.9 227 64.8
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 3.2e-74 282.3 227 64.8
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 7.1e-74 281.2 262 61.8
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 3.5e-73 278.9 230 59.6
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 3.5e-73 278.9 225 64.4
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 7.9e-73 277.7 222 61.3
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 3.9e-72 275.4 221 60.6
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 8.7e-72 274.2 220 64.5
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 1.9e-71 273.1 226 62.4
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 3.3e-71 272.3 216 68.5
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 7.3e-71 271.2 163 79.8
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 1.3e-70 270.4 252 59.1
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 2.1e-70 269.6 224 61.2
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 3.6e-70 268.9 224 59.8
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 5.3e-69 265.0 161 78.9
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 9.0e-69 264.2 198 67.7
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 2.6e-68 262.7 221 66.1
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 3.5e-65 252.3 178 71.9
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 5.1e-64 248.4 228 61.4
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 3.4e-60 235.7 226 57.1
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 3.4e-60 235.7 232 51.7
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 7.6e-60 234.6 217 54.4
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 5.5e-58 228.4 191 63.4
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 4.8e-54 215.3 123 81.3
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 6.9e-53 211.5 131 71.0
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 5.5e-50 201.8 116 83.6
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 4.6e-49 198.7 227 54.6
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 4.6e-49 198.7 245 46.5
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 1.1e-47 194.1 237 47.3
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 4.1e-45 185.7 214 48.1
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 8.2e-38 161.4 174 49.4
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 2.4e-37 159.8 100 75.0
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 6.9e-37 158.3 251 38.6
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 2.0e-31 140.2 182 45.1
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 7.2e-26 121.7 248 37.5
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 1.4e-13 80.9 92 55.4
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 7.7e-12 75.1 43 81.4
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.9e-10 70.5 43 69.8
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 1.2e-09 67.8 58 62.1
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 8.0e-09 65.1 38 78.9
Medtr5g009930 Medicago truncatula HOM05D001916 ORTHO05D003272 8.8e-08 61.6 184 26.1
Cpa.g.sc246.8 Carica papaya HOM05D005618 ORTHO05D118306 2.6e-07 60.1 44 72.7
Ca_24534_v3 Cicer arietinum L. HOM05D001916 ORTHO05D003272 1.3e-06 57.8 180 26.1
Hma1.2p1_1713F.1_g298910 Hydrangea macrophylla HOM05D001916 ORTHO05D003272 2.8e-06 56.6 228 23.7
QL02p033314 Quercus lobata HOM05D001916 ORTHO05D003272 6.3e-06 55.5 188 26.1
QL93p0326_0012 Quercus lobata HOM05D001916 ORTHO05D003272 6.3e-06 55.5 188 26.1


User provided reference genes

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