Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A05G069600 Gossypium hirsutum HOM05D007890 ORTHO05D009945 2.4e-90 335.5 173 100.0
Gorai.009G073500 Gossypium raimondii HOM05D007890 ORTHO05D009945 1.2e-86 323.2 173 96.0
Gohir.D05G072500 Gossypium hirsutum HOM05D007890 ORTHO05D009945 1.2e-84 316.6 173 94.2
Thecc.09G234600 Theobroma cacao HOM05D007890 ORTHO05D009945 7.9e-41 171.0 164 62.8
Duzib170G0138 Durio zibethinus HOM05D007890 ORTHO05D009945 1.3e-38 163.7 168 62.5
QL01p004625 Quercus lobata HOM05D007890 ORTHO05D009945 8.2e-30 134.4 168 48.8
Potri.001G257400 Populus trichocarpa HOM05D007890 ORTHO05D009945 7.0e-29 131.3 156 49.4
GSVIVG01025250001 Vitis vinifera HOM05D007890 ORTHO05D009945 2.5e-26 122.9 147 51.7
Ciclev10016956m.g Citrus clementina HOM05D007890 ORTHO05D009945 6.1e-25 118.2 113 61.1
arahy.Tifrunner.gnm1.ann1.I2HDTW Arachis hypogaea HOM05D007890 ORTHO05D009945 1.8e-24 116.7 116 52.6
TPR.G14719 Trifolium pratense HOM05D005961 ORTHO05D007391 3.0e-24 115.9 118 56.8
arahy.Tifrunner.gnm1.ann1.SWS7SX Arachis hypogaea HOM05D007890 ORTHO05D009945 2.0e-23 113.2 116 50.9
Manes.13G093240 Manihot esculenta HOM05D007890 ORTHO05D009945 2.6e-23 112.8 102 57.8
Sabra16G0157400 Salix brachista HOM05D007890 ORTHO05D009945 2.6e-23 112.8 151 45.7
Eucgr.B03690 Eucalyptus grandis HOM05D007890 ORTHO05D009945 5.7e-23 111.7 106 57.5
Lj6g0024098 Lotus japonicus HOM05D007890 ORTHO05D009945 7.5e-23 111.3 118 54.2
Nitab4.5_0002741g0090 Nicotiana tabacum HOM05D007890 ORTHO05D009945 7.5e-23 111.3 152 45.4
Solyc11g065680.1 Solanum lycopersicum HOM05D007890 ORTHO05D009945 9.7e-23 110.9 97 59.8
Sopen11g025420 Solanum pennellii HOM05D007890 ORTHO05D009945 9.7e-23 110.9 97 59.8
PGSC0003DMG400033336 Solanum tuberosum HOM05D007890 ORTHO05D009945 9.7e-23 110.9 97 59.8
Lalb_Chr15g0082521 Lupinus albus HOM05D007890 ORTHO05D009945 2.2e-22 109.8 97 60.8
Hma1.2p1_0606F.1_g188050 Hydrangea macrophylla HOM05D007890 ORTHO05D009945 3.7e-22 109.0 162 48.8
MSTRG.17595 Avicennia marina HOM05D007890 ORTHO05D009945 6.3e-22 108.2 108 59.3
TWI32G0791 Tripterygium wilfordii HOM05D007890 ORTHO05D009945 8.2e-22 107.8 187 46.0
Cfa009778 Carpinus fangiana HOM05D007890 ORTHO05D009945 1.4e-21 107.1 167 44.9
Glyma.08G336100 Glycine max HOM05D007890 ORTHO05D009945 1.4e-21 107.1 122 54.9
Atru.chr3.2706 Acer truncatum HOM05D007890 ORTHO05D009945 1.8e-21 106.7 119 51.3
Dinv36254 Davidia involucrata HOM05D007890 ORTHO05D009945 1.8e-21 106.7 119 54.6
Peaxi162Scf00004g02526 Petunia axillaris HOM05D007890 ORTHO05D009945 1.8e-21 106.7 97 57.7
MD03G1174000 Malus domestica HOM05D007890 ORTHO05D009945 2.4e-21 106.3 154 45.5
Medtr3g061480 Medicago truncatula HOM05D007890 ORTHO05D009945 2.4e-21 106.3 103 54.4
MD11G1192200 Malus domestica HOM05D007890 ORTHO05D009945 7.0e-21 104.8 155 45.8
TAR633G1231 Trochodendron aralioides HOM05D007890 ORTHO05D009945 7.0e-21 104.8 170 42.9
ClCG02G023170 Citrullus lanatus HOM05D007890 ORTHO05D009945 1.6e-20 103.6 117 52.1
CiPaw.13G159700 Carya illinoinensis HOM05D007890 ORTHO05D009945 2.6e-20 102.8 174 44.8
Psat5g163960 Pisum sativum HOM05D007890 ORTHO05D009945 3.5e-20 102.4 98 58.2
Lj1P329T66 Lonicera japonica HOM05D007890 ORTHO05D009945 7.7e-20 101.3 153 47.7
Oeu025872.1 Olea europaea HOM05D007890 ORTHO05D009945 1.3e-19 100.5 104 53.8
Rhsim13G0220700 Rhododendron simsii HOM05D007890 ORTHO05D009945 2.9e-19 99.4 107 56.1
THA.LOC104801952 Tarenaya hassleriana HOM05D007890 ORTHO05D009945 2.9e-19 99.4 113 53.1
SalBow5G2971 Salvia bowleyana HOM05D007890 ORTHO05D009945 2.5e-18 96.3 97 54.6
Sed0013757 Sechium edule HOM05D007890 ORTHO05D009945 3.2e-18 95.9 107 48.6
EL10Ac4g10243 Beta vulgaris HOM05D007890 ORTHO05D009945 4.2e-18 95.5 109 46.8
Actinidia06910 Actinidia chinensis HOM05D007890 ORTHO05D009945 7.2e-18 94.7 105 52.4
Ah.06g194130 Amaranthus hybridus HOM05D007890 ORTHO05D009945 1.2e-17 94.0 96 51.0
MELO3C014589.2 Cucumis melo HOM05D007890 ORTHO05D009945 1.2e-17 94.0 116 50.0
vmacro04152 Vaccinium macrocarpon HOM05D007890 ORTHO05D009945 2.1e-17 93.2 107 55.1
AL5G10980 Arabidopsis lyrata HOM05D007890 ORTHO05D009945 6.1e-17 91.7 131 43.5
BcaC06g31267 Brassica carinata HOM05D007890 ORTHO05D009945 2.3e-16 89.7 146 39.7
Phvul.006G062000 Phaseolus vulgaris HOM05D007890 ORTHO05D009945 2.3e-16 89.7 121 47.1
CsaV3_6G039340 Cucumis sativus L. HOM05D007890 ORTHO05D009945 3.0e-16 89.4 116 48.3
RcHm_v2.0_Chr5g0052301 Rosa chinensis HOM05D007890 ORTHO05D009945 3.0e-16 89.4 150 43.3
A06p43960 Brassica napus HOM05D001297 ORTHO05D001135 1.5e-15 87.0 167 35.3
BraA06t27271Z Brassica rapa HOM05D001297 ORTHO05D001135 1.5e-15 87.0 167 35.3
BcaC06g34102 Brassica carinata HOM05D007890 ORTHO05D009945 2.6e-15 86.3 140 38.6
C07p32670 Brassica napus HOM05D001297 ORTHO05D001135 2.6e-15 86.3 140 38.6
BolC7t43788H Brassica oleracea HOM05D001297 ORTHO05D001135 3.4e-15 85.9 141 38.3
AT2G01870 Arabidopsis thaliana HOM05D007890 ORTHO05D009945 5.7e-15 85.1 124 40.3
CARHR144430 Cardamine hirsuta HOM05D007890 ORTHO05D009945 5.7e-15 85.1 120 41.7
Migut.N02322 Erythranthe guttata HOM05D007890 ORTHO05D009945 1.3e-14 84.0 120 45.8
FAN16G0819 Fragaria x ananassa HOM05D007890 ORTHO05D009945 1.7e-14 83.6 167 40.1
VMungo0540G1907 Vigna mungo HOM05D007890 ORTHO05D009945 1.7e-14 83.6 95 52.6
Duzib170G0703 Durio zibethinus HOM05D007890 ORTHO05D009945 2.8e-14 82.8 108 57.4
FAN21G3432 Fragaria x ananassa HOM05D007890 ORTHO05D009945 2.8e-14 82.8 167 40.1
Prupe.4G250100 Prunus persica HOM05D007890 ORTHO05D009945 2.8e-14 82.8 159 35.2
Sp2g13290 Schrenkiella parvula HOM05D007890 ORTHO05D009945 2.8e-14 82.8 131 40.5
Carub.0005s0083 Capsella rubella HOM05D007890 ORTHO05D009945 6.3e-14 81.6 127 39.4
FvH4_3g28750 Fragaria vesca HOM05D007890 ORTHO05D009945 6.3e-14 81.6 103 50.5
FAN11G2622 Fragaria x ananassa HOM05D007890 ORTHO05D009945 6.3e-14 81.6 103 50.5
Aqoxy2G00189 Aquilegia oxysepala HOM05D007890 ORTHO05D009945 1.4e-13 80.5 138 42.8
Cpa.g.sc84.47 Carica papaya HOM05D007890 ORTHO05D009945 3.1e-13 79.3 184 36.4
HanXRQChr08g0209341 Helianthus annuus HOM05D007890 ORTHO05D009945 4.5e-12 75.5 86 51.2
ECA233G3563 Erigeron canadensis HOM05D000013 ORTHO05D004590 5.9e-12 75.1 109 49.5
Thhalv10005015m.g Eutrema salsugineum HOM05D007890 ORTHO05D009945 5.9e-12 75.1 113 39.8
Lsat_1_v5_gn_2_29200 Lactuca sativa HOM05D007890 ORTHO05D009945 2.2e-11 73.2 107 48.6
MBI02_g09445_MAGBIO Magnolia biondii HOM05D007890 ORTHO05D009945 2.9e-11 72.8 145 38.6
CDE05G2272 Ceratophyllum demersum HOM05D007890 ORTHO05D009945 3.8e-11 72.4 123 37.4
unitig_22.g5692 Utricularia gibba HOM05D007890 ORTHO05D009945 5.0e-11 72.0 100 46.0
Aa31LG2G8040 Aethionema arabicum HOM05D007890 ORTHO05D009945 7.2e-10 68.2 98 44.9
PSO724G0038 Papaver somniferum HOM05D007890 ORTHO05D009945 2.7e-09 66.2 109 44.0
Nitab4.5_0001587g0050 Nicotiana tabacum HOM05D007890 ORTHO05D009945 3.6e-09 65.9 64 53.1
PSO423G0105 Papaver somniferum HOM05D007890 ORTHO05D009945 6.1e-09 65.1 105 44.8
PGR102G2636 Punica granatum HOM05D007890 ORTHO05D009945 6.1e-09 65.1 166 32.5
CSS0004739 Camellia sinensis var. sinensis HOM05D007890 ORTHO05D009945 1.7e-06 57.0 62 54.8


User provided reference genes

Program Settings