Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A05G055000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 1.2e-113 413.3 218 100.0
Gohir.D05G056000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 3.6e-99 365.2 230 87.4
Gorai.009G057000 Gossypium raimondii HOM05D005809 ORTHO05D007259 2.3e-98 362.5 230 86.5
Thecc.09G030800 Theobroma cacao HOM05D005809 ORTHO05D007259 5.2e-90 334.7 228 79.8
Duzib187G1947 Durio zibethinus HOM05D005809 ORTHO05D007259 2.0e-89 332.8 230 78.3
COL.COLO4_18808 Corchorus olitorius HOM05D005809 ORTHO05D007259 1.6e-83 313.2 233 73.8
Duzib168G0271 Durio zibethinus HOM05D005809 ORTHO05D007259 1.6e-83 313.2 223 76.7
QL02p093215 Quercus lobata HOM05D005809 ORTHO05D007259 1.6e-70 270.0 232 65.5
CiPaw.15G168900 Carya illinoinensis HOM05D005809 ORTHO05D007259 1.9e-68 263.1 231 62.8
Dinv41380 Davidia involucrata HOM05D005809 ORTHO05D007259 5.6e-68 261.5 231 63.2
Dinv43244 Davidia involucrata HOM05D005809 ORTHO05D007259 1.3e-67 260.4 236 62.3
Sabra06G0140200 Salix brachista HOM05D005809 ORTHO05D007259 2.4e-66 256.1 229 65.1
Prupe.7G262800 Prunus persica HOM05D005809 ORTHO05D007259 6.9e-66 254.6 227 63.4
GSVIVG01023603001 Vitis vinifera HOM05D005809 ORTHO05D007259 1.5e-65 253.4 231 60.6
Potri.006G184600 Populus trichocarpa HOM05D005809 ORTHO05D007259 2.0e-65 253.1 227 64.3
Ciclev10009378m.g Citrus clementina HOM05D005809 ORTHO05D007259 3.4e-65 252.3 236 59.7
Nn8g39891 Nelumbo nucifera HOM05D005809 ORTHO05D007259 3.4e-65 252.3 229 62.0
AL8G34030 Arabidopsis lyrata HOM05D005809 ORTHO05D007259 7.6e-65 251.1 233 60.1
Eucgr.C02542 Eucalyptus grandis HOM05D005809 ORTHO05D007259 9.9e-65 250.8 236 60.2
CSS0045900 Camellia sinensis var. sinensis HOM05D005809 ORTHO05D007259 3.8e-64 248.8 236 59.3
Lalb_Chr23g0275681 Lupinus albus HOM05D005809 ORTHO05D007259 3.8e-64 248.8 232 59.5
Hma1.2p1_0222F.1_g093550 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 6.4e-64 248.1 231 63.2
CARHR271730 Cardamine hirsuta HOM05D005809 ORTHO05D007259 8.4e-64 247.7 233 59.7
Eucgr.C02492 Eucalyptus grandis HOM05D005809 ORTHO05D007259 8.4e-64 247.7 236 59.7
AT5G57950 Arabidopsis thaliana HOM05D005809 ORTHO05D007259 1.4e-63 246.9 233 59.2
MD02G1007700 Malus domestica HOM05D005809 ORTHO05D007259 1.4e-63 246.9 227 62.1
MSTRG.19648 Avicennia marina HOM05D005809 ORTHO05D007259 1.9e-63 246.5 228 60.1
Manes.06G033951 Manihot esculenta HOM05D005809 ORTHO05D007259 3.2e-63 245.7 233 60.1
Lj6g0016819 Lotus japonicus HOM05D005809 ORTHO05D007259 4.2e-63 245.4 230 58.3
Nitab4.5_0005653g0040 Nicotiana tabacum HOM05D005809 ORTHO05D007259 4.2e-63 245.4 220 60.9
RcHm_v2.0_Chr2g0085671 Rosa chinensis HOM05D005809 ORTHO05D007259 4.2e-63 245.4 227 63.4
Carub.0008s1848 Capsella rubella HOM05D005809 ORTHO05D007259 5.4e-63 245.0 233 58.8
TWI34G1090 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 7.1e-63 244.6 238 58.8
Phvul.009G195100 Phaseolus vulgaris HOM05D005809 ORTHO05D007259 9.3e-63 244.2 230 58.7
MELO3C004136.2 Cucumis melo HOM05D005809 ORTHO05D007259 2.1e-62 243.0 236 59.7
CsaV3_2G007490 Cucumis sativus L. HOM05D005809 ORTHO05D007259 3.5e-62 242.3 236 58.9
Atru.chr7.51 Acer truncatum HOM05D005809 ORTHO05D007259 6.0e-62 241.5 232 58.6
Nitab4.5_0001571g0010 Nicotiana tabacum HOM05D005809 ORTHO05D007259 6.0e-62 241.5 230 57.8
Sopen07g001740 Solanum pennellii HOM05D005809 ORTHO05D007259 6.0e-62 241.5 229 58.1
TAR636G3217 Trochodendron aralioides HOM05D005809 ORTHO05D007259 6.0e-62 241.5 232 59.9
CANSAT11G2656 Cannabis sativa HOM05D005809 ORTHO05D007259 1.3e-61 240.4 233 58.8
Solyc07g005640.3 Solanum lycopersicum HOM05D005809 ORTHO05D007259 2.3e-61 239.6 229 58.5
FAN23G2666 Fragaria x ananassa HOM05D005809 ORTHO05D007259 3.9e-61 238.8 227 61.7
Glyma.06G219400 Glycine max HOM05D005809 ORTHO05D007259 5.1e-61 238.4 231 58.0
Migut.J01341 Erythranthe guttata HOM05D005809 ORTHO05D007259 6.7e-61 238.0 228 59.2
Sp6g19620 Schrenkiella parvula HOM05D005809 ORTHO05D007259 6.7e-61 238.0 233 57.1
TWI32G0918 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 1.5e-60 236.9 226 60.6
BraA10t43609Z Brassica rapa HOM05D005809 ORTHO05D007259 2.5e-60 236.1 233 59.2
PGSC0003DMG401011139 Solanum tuberosum HOM05D005809 ORTHO05D007259 5.6e-60 235.0 230 56.1
Ca_03733_v3 Cicer arietinum L. HOM05D005809 ORTHO05D007259 9.6e-60 234.2 233 56.2
Sed0001225 Sechium edule HOM05D005809 ORTHO05D007259 9.6e-60 234.2 235 56.6
Aa31LG3G13770 Aethionema arabicum HOM05D000853 ORTHO05D000723 1.6e-59 233.4 228 57.0
HanXRQChr17g0552351 Helianthus annuus HOM05D005809 ORTHO05D007259 1.1e-58 230.7 230 59.1
TPR.G20735 Trifolium pratense HOM05D005809 ORTHO05D007259 1.4e-58 230.3 231 57.1
FvH4_1g00940 Fragaria vesca HOM05D005809 ORTHO05D007259 1.8e-58 229.9 218 61.0
Oeu052197.1 Olea europaea HOM05D005809 ORTHO05D007259 1.8e-58 229.9 229 57.2
Rhsim01G0033400 Rhododendron simsii HOM05D005809 ORTHO05D007259 1.8e-58 229.9 224 57.6
Glyma.06G219200 Glycine max HOM05D005809 ORTHO05D007259 2.4e-58 229.6 230 57.8
A10p16200 Brassica napus HOM05D005809 ORTHO05D007259 5.3e-58 228.4 233 59.2
Medtr2g460780 Medicago truncatula HOM05D005809 ORTHO05D007259 5.3e-58 228.4 230 56.5
Psat1g021800 Pisum sativum HOM05D005809 ORTHO05D007259 1.2e-57 227.3 225 57.8
THA.LOC104817821 Tarenaya hassleriana HOM05D005809 ORTHO05D007259 1.5e-57 226.9 229 55.0
Actinidia04301 Actinidia chinensis HOM05D005809 ORTHO05D007259 2.0e-57 226.5 218 56.0
arahy.Tifrunner.gnm1.ann1.46B1EJ Arachis hypogaea HOM05D005809 ORTHO05D007259 2.0e-57 226.5 229 57.2
C09p49790 Brassica napus HOM05D005809 ORTHO05D007259 2.0e-57 226.5 230 55.7
Cpa.g.sc46.154 Carica papaya HOM05D005809 ORTHO05D007259 2.6e-57 226.1 226 55.8
arahy.Tifrunner.gnm1.ann1.Z5GGTZ Arachis hypogaea HOM05D005809 ORTHO05D007259 7.6e-57 224.6 230 57.4
SalBow1G5910 Salvia bowleyana HOM05D005809 ORTHO05D007259 9.9e-57 224.2 221 57.9
BolC9t57830H Brassica oleracea HOM05D005809 ORTHO05D007259 1.7e-56 223.4 230 55.2
Thhalv10014592m.g Eutrema salsugineum HOM05D005809 ORTHO05D007259 2.2e-56 223.0 226 57.1
Sc08g0005640 Simmondsia chinensis HOM05D005809 ORTHO05D007259 2.2e-56 223.0 231 53.7
Aqoxy2G02328 Aquilegia oxysepala HOM05D005809 ORTHO05D007259 8.4e-56 221.1 230 53.9
PGR102G1797 Punica granatum HOM05D005809 ORTHO05D007259 1.1e-55 220.7 237 55.3
CAN.G160.58 Capsicum annuum HOM05D005809 ORTHO05D007259 1.4e-55 220.3 232 55.2
FAN28G0834 Fragaria x ananassa HOM05D005809 ORTHO05D007259 2.4e-55 219.5 226 57.5
Peaxi162Scf00401g00082 Petunia axillaris HOM05D005809 ORTHO05D007259 5.5e-55 218.4 216 55.6
Haze_19206 Corylus avellana HOM05D005809 ORTHO05D007259 3.5e-54 215.7 221 57.9
ECA247G0266 Erigeron canadensis HOM05D005809 ORTHO05D007259 4.6e-54 215.3 233 54.5
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 3.9e-53 212.2 225 54.2
PSO782G1751 Papaver somniferum HOM05D005809 ORTHO05D007259 8.7e-53 211.1 230 52.2
PSO063G2086 Papaver somniferum HOM05D005809 ORTHO05D007259 1.1e-52 210.7 230 51.7
Ah.02g128190 Amaranthus hybridus HOM05D005809 ORTHO05D007259 1.5e-52 210.3 225 53.8
DCAR_017909 Daucus carota HOM05D005809 ORTHO05D007259 3.3e-52 209.1 256 50.0
HPP92_016019 Vanilla planifolia HOM05D005809 ORTHO05D007259 4.3e-52 208.8 225 50.7
ATR0739G206 Amborella trichopoda HOM05D005809 ORTHO05D007259 1.4e-50 203.8 227 51.5
vmacro16802 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 1.2e-49 200.7 286 45.1
ClCG02G014530 Citrullus lanatus HOM05D005809 ORTHO05D007259 2.0e-49 199.9 216 55.1
Hund01517 Selenicereus undatus HOM05D005809 ORTHO05D007259 1.0e-48 197.6 211 53.1
SGA_v2.0_scaffold265G46107 Striga asiatica HOM05D005809 ORTHO05D007259 2.2e-48 196.4 217 52.1
Dinv42856 Davidia involucrata HOM05D005809 ORTHO05D007259 4.9e-48 195.3 157 66.9
Lsat_1_v5_gn_8_63301 Lactuca sativa HOM05D005809 ORTHO05D007259 4.9e-48 195.3 240 50.8
HPP92_016035 Vanilla planifolia HOM05D005809 ORTHO05D007259 9.3e-47 191.0 206 51.0
Zm00001eb312980 Zea mays HOM05D005809 ORTHO05D007259 9.3e-47 191.0 225 48.4
AUR62035200 Chenopodium quinoa HOM05D005809 ORTHO05D007259 1.0e-45 187.6 218 49.1
Os09g0420600 Oryza sativa ssp. japonica HOM05D005809 ORTHO05D007259 1.8e-45 186.8 225 47.6
CDE12G0564 Ceratophyllum demersum HOM05D005809 ORTHO05D007259 1.1e-44 184.1 251 45.4
SEGI_31268 Sequoiadendron giganteum HOM05D005809 ORTHO05D007259 2.1e-43 179.9 231 45.9
Lj9C717G7 Lonicera japonica HOM05D005809 ORTHO05D007259 3.7e-43 179.1 211 49.3
SMO361G0343 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 2.6e-41 172.9 229 43.2
Mapoly0003s0072 Marchantia polymorpha HOM05D005809 ORTHO05D007259 4.5e-41 172.2 238 44.1
AagrBONN_evm.TU.Sc2ySwM_117.3948 Anthoceros agrestis HOM05D005809 ORTHO05D007259 5.0e-40 168.7 230 43.5
Hma1.2p1_0010F.1_g006710 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 1.1e-39 167.5 154 61.0
SMO361G0248 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 7.2e-39 164.9 225 43.1
Pp3c8_2960 Physcomitrium patens HOM05D005809 ORTHO05D007259 1.8e-37 160.2 230 43.0
vmacro05441 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 2.5e-36 156.4 149 55.0
SHI02853 Sapria himalayana HOM05D005809 ORTHO05D007259 9.7e-36 154.5 213 46.0
Pp3c16_13530 Physcomitrium patens HOM05D005809 ORTHO05D007259 1.4e-34 150.6 218 42.2
Actinidia38322 Actinidia chinensis HOM05D005809 ORTHO05D007259 6.5e-32 141.7 191 49.7
Cc06_g14990 Coffea canephora HOM05D005809 ORTHO05D007259 8.5e-32 141.4 106 63.2
RcHm_v2.0_Chr5g0031291 Rosa chinensis HOM05D005809 ORTHO05D007259 1.8e-29 133.7 139 55.4
Aa31LG1G19310 Aethionema arabicum HOM05D005809 ORTHO05D007259 3.9e-29 132.5 93 67.7
FAN21G3780 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.1e-28 131.0 181 48.1
FAN25G0559 Fragaria x ananassa HOM05D005809 ORTHO05D007259 4.4e-28 129.0 119 59.7
Sed0002126 Sechium edule HOM05D005809 ORTHO05D007259 2.2e-27 126.7 164 49.4
EL10As1g23143 Beta vulgaris HOM05D005809 ORTHO05D007259 3.7e-27 125.9 115 58.3
Oeu007777.1 Olea europaea HOM05D005809 ORTHO05D007259 5.7e-20 102.1 83 57.8
Oeu038698.1 Olea europaea HOM05D005809 ORTHO05D007259 2.2e-19 100.1 83 56.6
Oeu049715.1 Olea europaea HOM05D005809 ORTHO05D007259 2.8e-19 99.8 82 56.1
FvH4_3g18530 Fragaria vesca HOM05D005809 ORTHO05D007259 1.8e-18 97.1 155 43.9
FAN11G2737 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.8e-18 97.1 155 43.9
Oeu017561.1 Olea europaea HOM05D005809 ORTHO05D007259 4.1e-18 95.9 83 54.2
MCO13G469 Micromonas commoda HOM05D005809 ORTHO05D007259 9.1e-18 94.7 218 33.0
CBR_g38078 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-16 90.5 260 27.7
FAN26G2229 Fragaria x ananassa HOM05D005809 ORTHO05D007259 2.5e-15 86.7 71 60.6
MD09G1175000 Malus domestica HOM05D005809 ORTHO05D007259 1.2e-14 84.3 90 61.1
Hma1.2p1_0222F.1_g093570 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 4.7e-14 82.4 54 74.1
Oeu029241.1 Olea europaea HOM05D005809 ORTHO05D007259 8.0e-14 81.6 77 49.4
Cc06_g14980 Coffea canephora HOM05D005809 ORTHO05D007259 1.8e-13 80.5 105 49.5
CSS0015204 Camellia sinensis var. sinensis HOM05D000853 ORTHO05D000723 9.7e-12 74.7 66 63.6
Cre04.g226950 Chlamydomonas reinhardtii HOM05D005809 ORTHO05D007259 9.7e-12 74.7 271 24.7
EL10As1g23140 Beta vulgaris HOM05D005809 ORTHO05D007259 2.8e-11 73.2 49 69.4
vmacro11582 Vaccinium macrocarpon HOM05D005809 ORTHO05D010075 1.1e-10 71.2 54 66.7
PRCOL_00000214 Prasinoderma coloniale HOM05D005809 ORTHO05D007259 9.1e-10 68.2 203 31.5


User provided reference genes

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