Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 3.6e-312 1074.3 520 100.0
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 9.2e-311 1069.3 520 99.6
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.6e-307 1058.5 530 97.5
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 7.4e-276 953.4 520 88.5
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 1.2e-273 946.0 520 87.5
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 8.5e-272 939.9 519 87.1
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 8.5e-272 939.9 519 87.1
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 9.7e-268 926.4 544 82.9
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 2.9e-264 914.8 520 82.3
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 4.4e-260 901.0 520 82.3
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 5.7e-260 900.6 520 82.5
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 1.7e-259 899.0 520 82.3
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 3.7e-259 897.9 518 82.8
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 2.4e-258 895.2 518 82.4
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 2.2e-256 888.6 520 81.2
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 4.7e-254 880.9 520 80.0
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 3.9e-253 877.9 520 80.4
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 2.6e-252 875.2 521 79.7
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 4.4e-252 874.4 520 82.3
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 4.4e-252 874.4 521 79.8
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 5.7e-252 874.0 518 80.7
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 5.7e-252 874.0 513 81.1
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 1.3e-251 872.8 520 79.6
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 1.7e-251 872.5 521 80.0
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 2.8e-251 871.7 521 79.3
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 3.7e-251 871.3 511 81.0
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 3.7e-251 871.3 520 79.6
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 8.2e-251 870.2 521 79.8
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 1.1e-250 869.8 519 80.0
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.1e-250 868.2 520 79.2
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 5.3e-250 867.5 513 80.3
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 9.1e-250 866.7 521 79.7
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 9.1e-250 866.7 520 78.8
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 4.5e-249 864.4 520 79.4
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 4.5e-249 864.4 518 80.3
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 5.9e-249 864.0 516 80.0
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 7.7e-249 863.6 521 79.1
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 1.3e-248 862.8 520 78.8
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 2.9e-248 861.7 517 79.7
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 6.5e-248 860.5 516 79.7
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 1.1e-247 859.8 518 79.9
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 1.9e-247 859.0 521 77.7
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 1.9e-247 859.0 521 77.9
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 1.9e-247 859.0 521 77.9
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 2.5e-247 858.6 520 78.5
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 4.2e-247 857.8 521 77.7
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 7.2e-247 857.1 520 78.5
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 9.4e-247 856.7 521 77.4
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 9.4e-247 856.7 521 78.5
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.2e-246 856.3 520 78.7
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.2e-246 856.3 519 79.2
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 1.6e-246 855.9 519 79.0
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.7e-246 855.1 554 75.6
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 2.7e-246 855.1 519 79.2
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 8.0e-246 853.6 521 77.4
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 8.0e-246 853.6 519 79.0
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.0e-245 853.2 519 79.0
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 1.4e-245 852.8 518 78.0
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 1.4e-245 852.8 518 78.0
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 1.4e-245 852.8 520 77.3
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 1.8e-245 852.4 544 74.6
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 1.8e-245 852.4 521 78.7
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 1.8e-245 852.4 520 78.1
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 2.3e-245 852.0 518 77.6
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 3.0e-245 851.7 518 78.2
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 5.2e-245 850.9 520 77.9
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 5.2e-245 850.9 519 78.0
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 2.0e-244 849.0 520 77.7
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 2.0e-244 849.0 520 78.5
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 5.7e-244 847.4 520 77.1
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 7.5e-244 847.0 520 77.7
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 7.5e-244 847.0 520 77.7
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 1.7e-243 845.9 520 77.5
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 3.7e-243 844.7 517 78.7
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 1.4e-242 842.8 520 77.5
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 1.4e-242 842.8 520 78.7
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 7.0e-242 840.5 522 77.0
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 9.1e-242 840.1 521 77.4
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 2.7e-241 838.6 521 75.6
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 2.7e-241 838.6 520 75.4
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 7.7e-241 837.0 518 78.2
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 8.5e-240 833.6 515 77.5
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 1.1e-239 833.2 526 75.5
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 7.2e-239 830.5 517 76.8
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 1.6e-238 829.3 520 76.9
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 6.1e-238 827.4 521 74.9
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 1.5e-236 822.8 514 76.8
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 7.5e-236 820.5 519 76.5
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 2.2e-235 818.9 516 76.9
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 3.7e-235 818.1 517 75.0
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 4.8e-235 817.8 530 74.2
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 8.3e-235 817.0 492 79.5
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 1.1e-234 816.6 520 75.6
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 2.4e-234 815.5 508 75.8
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 3.1e-234 815.1 520 76.3
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 4.1e-234 814.7 520 76.2
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 7.0e-234 813.9 520 76.0
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 1.6e-233 812.8 524 75.4
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 3.5e-233 811.6 520 75.2
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 4.5e-233 811.2 520 75.2
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 8.6e-232 807.0 466 82.0
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 8.6e-232 807.0 518 76.1
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 1.1e-231 806.6 522 74.3
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 2.5e-231 805.4 466 82.2
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 3.3e-231 805.1 511 76.3
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 4.2e-231 804.7 519 75.0
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 1.2e-230 803.1 520 74.4
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 1.2e-230 803.1 522 74.1
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 3.0e-229 798.5 520 75.6
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 1.2e-228 796.6 520 74.2
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 9.8e-228 793.5 519 73.6
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 2.8e-227 792.0 516 73.4
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 6.3e-227 790.8 509 74.5
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 5.4e-226 787.7 469 80.2
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 1.6e-225 786.2 509 73.7
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 3.5e-225 785.0 519 73.2
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 1.7e-224 782.7 520 72.7
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 2.9e-224 781.9 464 80.0
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 2.9e-224 781.9 573 68.1
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 3.3e-223 778.5 473 78.9
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 7.3e-223 777.3 490 77.1
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 9.5e-223 776.9 553 69.8
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 1.2e-222 776.5 521 72.0
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 2.1e-222 775.8 472 76.9
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 4.7e-222 774.6 561 70.8
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 4.7e-222 774.6 463 78.6
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 3.1e-221 771.9 519 72.1
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 5.8e-220 767.7 470 78.1
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 1.6e-214 749.6 520 71.9
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 1.6e-214 749.6 518 69.5
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 3.6e-214 748.4 520 70.6
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 1.1e-213 746.9 520 69.8
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 1.8e-213 746.1 550 68.0
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 6.8e-213 744.2 520 70.2
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 6.8e-213 744.2 520 69.6
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 8.9e-213 743.8 520 69.6
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 3.2e-210 735.3 520 70.2
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 8.1e-206 720.7 540 67.2
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 8.1e-198 694.1 519 67.1
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 5.2e-197 691.4 520 66.0
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 8.9e-197 690.6 503 70.2
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 1.7e-192 676.4 380 83.9
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 3.2e-186 655.6 373 82.8
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 3.6e-182 642.1 561 60.8
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 3.4e-180 635.6 480 66.2
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 4.6e-177 625.2 480 66.0
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 6.0e-177 624.8 380 79.7
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 1.4e-170 603.6 486 60.1
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 1.4e-165 587.0 446 61.9
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 2.9e-155 552.7 472 56.8
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 7.4e-151 538.1 472 56.8
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 5.3e-141 505.4 352 70.7
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 2.9e-131 473.0 293 77.8
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 2.5e-130 469.9 292 76.0
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 1.8e-125 453.8 291 75.6
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 1.8e-125 453.8 265 79.2
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 2.2e-123 446.8 288 75.7
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 3.0e-120 436.4 289 73.7
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 3.3e-106 389.8 243 74.5
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 9.2e-93 345.1 244 69.3
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.8e-80 304.3 204 71.1
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 1.1e-56 225.3 132 76.5
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 1.2e-55 221.9 419 34.6
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 1.4e-53 214.9 471 32.1
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 6.5e-38 162.9 203 46.8
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 2.5e-37 161.0 134 52.2
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 7.9e-36 156.0 149 53.7
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 3.0e-27 127.5 87 74.7
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 2.9e-22 110.9 59 83.1
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.6e-20 105.1 142 47.9
MD01G1180200 Malus domestica HOM05D003954 ORTHO05D004627 1.4e-19 102.1 60 73.3
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 3.7e-17 94.0 156 34.0
Actinidia32651 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.7e-14 85.1 171 40.9
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 2.7e-07 61.2 37 75.7
CAN.G195.50 Capsicum annuum HOM05D003954 ORTHO05D004627 7.7e-07 59.7 47 57.4
TPR.G21382 Trifolium pratense HOM05D003954 ORTHO05D004627 3.8e-06 57.4 55 60.0


User provided reference genes

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