Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.7e-68 260.8 130 100.0
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 7.2e-63 243.8 120 100.0
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.7e-59 232.6 120 95.0
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.4e-58 229.6 120 94.2
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.2e-51 205.7 114 89.5
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.2e-51 205.7 114 89.5
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.1e-50 203.4 114 88.6
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 2.9e-48 195.3 109 88.1
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 8.6e-48 193.7 122 81.1
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 1.1e-47 193.4 127 78.7
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 3.4e-44 181.8 112 82.1
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 2.4e-42 175.6 107 80.4
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 2.0e-41 172.6 109 78.0
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 2.7e-41 172.2 104 79.8
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 3.5e-41 171.8 122 73.8
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 6.0e-41 171.0 107 78.5
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 6.0e-41 171.0 107 78.5
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 6.0e-41 171.0 105 77.1
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 7.8e-41 170.6 105 78.1
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.0e-40 170.2 107 75.7
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 1.3e-40 169.9 122 72.1
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 1.3e-40 169.9 107 74.8
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 1.7e-40 169.5 107 75.7
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 1.7e-40 169.5 105 79.0
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 2.3e-40 169.1 104 79.8
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 2.3e-40 169.1 105 77.1
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 3.0e-40 168.7 105 76.2
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 3.0e-40 168.7 107 76.6
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 3.0e-40 168.7 105 79.0
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 5.0e-40 167.9 122 70.5
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 5.0e-40 167.9 107 73.8
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 5.0e-40 167.9 110 73.6
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 6.6e-40 167.5 118 72.0
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 6.6e-40 167.5 118 72.0
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 8.6e-40 167.2 104 77.9
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 8.6e-40 167.2 107 74.8
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 8.6e-40 167.2 105 78.1
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 8.6e-40 167.2 105 78.1
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.1e-39 166.8 107 79.4
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 1.1e-39 166.8 105 77.1
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 1.1e-39 166.8 105 78.1
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 1.1e-39 166.8 105 76.2
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 1.5e-39 166.4 108 74.1
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 4.3e-39 164.9 105 75.2
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 4.3e-39 164.9 105 76.2
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 5.6e-39 164.5 104 79.8
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 5.6e-39 164.5 108 73.1
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 5.6e-39 164.5 107 73.8
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 7.3e-39 164.1 104 76.0
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 7.3e-39 164.1 111 71.2
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 7.3e-39 164.1 105 78.1
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 9.5e-39 163.7 122 67.2
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 1.6e-38 162.9 107 73.8
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.6e-38 162.9 105 76.2
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 2.1e-38 162.5 107 73.8
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.1e-38 162.5 105 76.2
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.1e-38 162.5 105 76.2
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 2.8e-38 162.2 105 75.2
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 3.6e-38 161.8 104 74.0
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 6.2e-38 161.0 109 71.6
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 6.2e-38 161.0 119 66.4
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 8.0e-38 160.6 112 70.5
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 8.0e-38 160.6 112 70.5
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 1.4e-37 159.8 109 69.7
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 2.3e-37 159.1 107 72.0
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 2.3e-37 159.1 104 73.1
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 3.1e-37 158.7 113 67.3
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 5.2e-37 157.9 104 75.0
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 6.8e-37 157.5 104 71.2
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 1.2e-36 156.8 107 71.0
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 2.6e-36 155.6 104 73.1
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 2.6e-36 155.6 109 69.7
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 3.4e-36 155.2 104 71.2
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 3.4e-36 155.2 104 75.0
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 4.4e-36 154.8 104 70.2
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 5.8e-36 154.5 103 73.8
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 2.2e-35 152.5 104 69.2
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 2.2e-35 152.5 104 71.2
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 2.9e-35 152.1 104 70.2
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 2.9e-35 152.1 104 68.3
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 3.7e-35 151.8 104 69.2
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 3.7e-35 151.8 104 68.3
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 4.9e-35 151.4 106 67.9
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 6.4e-35 151.0 104 69.2
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.1e-34 150.2 104 72.1
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 1.4e-34 149.8 113 63.7
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 1.9e-34 149.4 94 75.5
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 3.2e-34 148.7 104 69.2
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 7.0e-34 147.5 107 65.4
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 7.0e-34 147.5 121 61.2
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.6e-33 146.4 109 62.4
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 2.7e-33 145.6 99 69.7
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 2.7e-33 145.6 103 68.9
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 3.5e-33 145.2 104 69.2
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 4.6e-33 144.8 107 66.4
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 6.0e-33 144.4 103 68.9
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 7.8e-33 144.1 104 63.5
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 1.0e-32 143.7 118 61.9
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 2.3e-32 142.5 107 65.4
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 2.3e-32 142.5 109 60.6
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 3.0e-32 142.1 106 62.3
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 3.0e-32 142.1 110 66.4
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 3.0e-32 142.1 118 61.0
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 3.0e-32 142.1 104 68.3
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 3.9e-32 141.7 107 64.5
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 6.6e-32 141.0 105 65.7
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 1.9e-31 139.4 94 72.3
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 1.9e-31 139.4 104 63.5
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 1.9e-31 139.4 103 63.1
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 3.3e-31 138.7 104 62.5
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 3.3e-31 138.7 104 60.6
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 4.3e-31 138.3 103 67.0
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 4.3e-31 138.3 104 62.5
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 5.6e-31 137.9 103 64.1
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 7.3e-31 137.5 104 61.5
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 9.5e-31 137.1 109 61.5
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 9.5e-31 137.1 104 65.4
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.2e-30 136.7 95 70.5
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 1.2e-30 136.7 107 59.8
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 1.6e-30 136.3 104 63.5
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 1.6e-30 136.3 104 63.5
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 1.6e-30 136.3 104 63.5
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 1.6e-30 136.3 104 65.4
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 2.8e-30 135.6 104 62.5
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 3.6e-30 135.2 104 62.5
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 3.6e-30 135.2 102 62.7
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 6.2e-30 134.4 104 61.5
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 6.2e-30 134.4 105 62.9
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.3e-29 132.5 104 62.5
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.3e-29 132.5 102 64.7
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.3e-29 132.5 104 63.5
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 3.1e-29 132.1 104 61.5
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 5.2e-29 131.3 102 61.8
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 5.2e-29 131.3 104 57.7
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 5.2e-29 131.3 103 60.2
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 6.8e-29 131.0 104 62.5
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 6.8e-29 131.0 102 62.7
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 1.2e-28 130.2 106 61.3
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 1.2e-28 130.2 125 56.0
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 2.0e-28 129.4 103 63.1
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 3.4e-28 128.6 115 53.9
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 4.4e-28 128.3 104 60.6
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 5.8e-28 127.9 102 62.7
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 1.3e-27 126.7 103 56.3
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 6.4e-27 124.4 104 57.7
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 8.3e-27 124.0 115 55.7
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 8.3e-27 124.0 115 55.7
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 1.1e-26 123.6 104 56.7
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 1.4e-26 123.2 125 51.2
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 1.4e-26 123.2 104 57.7
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 3.2e-26 122.1 115 56.5
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 7.1e-26 120.9 104 56.7
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 2.1e-25 119.4 120 54.2
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 6.0e-25 117.9 104 53.8
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 7.8e-25 117.5 98 56.1
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 3.9e-24 115.2 100 55.0
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 3.3e-23 112.1 58 87.9
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 2.4e-21 105.9 105 53.3
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 6.8e-21 104.4 66 74.2
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 2.7e-17 92.4 69 63.8
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.7e-16 89.7 53 81.1
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 3.0e-16 89.0 64 71.9
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 3.3e-15 85.5 65 61.5
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 9.6e-15 84.0 92 46.7
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 2.8e-14 82.4 91 42.9
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.4e-13 80.1 70 61.4
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 3.4e-12 75.5 100 41.0
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.6e-09 66.6 51 64.7
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 3.0e-08 62.4 46 69.6
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 3.9e-08 62.0 47 68.1
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 6.6e-08 61.2 46 69.6
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 7.3e-07 57.8 46 65.2
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.8e-06 55.8 46 60.9
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.8e-06 55.8 46 60.9


User provided reference genes

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